Wall clock time and date at job start Wed Apr 1 2020 02:23:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 110.00321 * 2 1 4 4 C 1.54337 * 109.99352 * 238.96344 * 2 1 3 5 5 C 1.55157 * 103.02288 * 218.66992 * 4 2 1 6 6 H 1.09000 * 111.03517 * 277.21576 * 5 4 2 7 7 N 1.46500 * 111.00604 * 153.37712 * 5 4 2 8 8 C 1.36934 * 119.99724 * 161.34731 * 7 5 4 9 9 H 1.08003 * 120.00351 * 0.02562 * 8 7 5 10 10 C 1.38819 * 119.99687 * 180.02562 * 8 7 5 11 11 N 1.31614 * 119.99917 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 119.99646 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47351 * 60.00151 * 12 10 8 14 14 H 1.48498 * 109.46715 * 179.97438 * 12 10 8 15 15 H 1.48503 * 109.46922 * 299.99664 * 12 10 8 16 16 C 1.54912 * 101.58210 * 35.30385 * 5 4 2 17 17 N 1.47029 * 109.88083 * 121.09831 * 2 1 3 18 18 C 1.34771 * 125.64759 * 298.38844 * 17 2 1 19 19 O 1.21287 * 119.99914 * 359.72083 * 18 17 2 20 20 C 1.50697 * 120.00258 * 179.71740 * 18 17 2 21 21 C 1.50698 * 109.47158 * 180.02562 * 20 18 17 22 22 C 1.38249 * 119.97953 * 265.25585 * 21 20 18 23 23 C 1.38360 * 120.02281 * 180.25765 * 22 21 20 24 24 F 1.35104 * 120.00648 * 179.74027 * 23 22 21 25 25 C 1.38680 * 119.98115 * 359.46951 * 23 22 21 26 26 F 1.35101 * 120.02333 * 180.29973 * 25 23 22 27 27 C 1.38357 * 119.95961 * 0.27604 * 25 23 22 28 28 C 1.38424 * 119.97714 * 85.00556 * 21 20 18 29 29 F 1.35097 * 119.99272 * 359.97438 * 28 21 20 30 30 H 1.08996 * 109.46824 * 300.35821 * 1 2 3 31 31 H 1.09006 * 109.47125 * 60.35625 * 1 2 3 32 32 H 1.08998 * 109.47176 * 180.35514 * 1 2 3 33 33 H 1.08995 * 110.85098 * 100.19823 * 4 2 1 34 34 H 1.09002 * 110.66434 * 337.04714 * 4 2 1 35 35 H 0.96999 * 120.00228 * 341.35235 * 7 5 4 36 36 H 0.97005 * 120.00000 * 180.02562 * 11 10 8 37 37 H 1.09001 * 110.36854 * 204.15493 * 16 5 4 38 38 H 1.08996 * 110.46229 * 81.88054 * 16 5 4 39 39 H 1.08999 * 109.46729 * 60.00161 * 20 18 17 40 40 H 1.08999 * 109.47189 * 300.00540 * 20 18 17 41 41 H 1.08004 * 119.98604 * 359.97438 * 22 21 20 42 42 H 1.07996 * 120.01306 * 180.02562 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0577 -0.7478 -1.2427 5 6 3.2863 -1.5184 -0.6915 6 1 4.1674 -0.8775 -0.6579 7 7 3.5475 -2.7243 -1.4813 8 6 4.7733 -3.3314 -1.4190 9 1 5.5475 -2.9214 -0.7874 10 6 5.0210 -4.4737 -2.1679 11 7 4.0773 -4.9736 -2.9372 12 14 6.6930 -5.3022 -2.0824 13 1 6.9660 -5.7233 -0.6847 14 1 6.7007 -6.4940 -2.9683 15 1 7.7413 -4.3484 -2.5258 16 6 2.8099 -1.8826 0.7368 17 7 2.0300 -0.7142 1.1839 18 6 1.8074 -0.3621 2.4657 19 8 1.1475 0.6238 2.7180 20 6 2.3783 -1.1934 3.5855 21 6 1.9864 -0.5898 4.9095 22 6 2.8459 0.2809 5.5532 23 6 2.4892 0.8315 6.7714 24 9 3.3316 1.6783 7.4028 25 6 1.2644 0.5183 7.3415 26 9 0.9127 1.0602 8.5280 27 6 0.4025 -0.3490 6.6940 28 6 0.7638 -0.9035 5.4778 29 9 -0.0777 -1.7501 4.8451 30 1 -0.3633 0.5194 0.8867 31 1 -0.3634 0.5083 -0.8932 32 1 -0.3633 -1.0276 0.0064 33 1 2.3598 -0.0450 -2.0191 34 1 1.3067 -1.4405 -1.6225 35 1 2.8521 -3.0927 -2.0484 36 1 4.2502 -5.7721 -3.4602 37 1 3.6654 -2.0413 1.3933 38 1 2.1806 -2.7722 0.7133 39 1 3.4650 -1.2161 3.5035 40 1 1.9878 -2.2089 3.5197 41 1 3.7980 0.5279 5.1072 42 1 -0.5517 -0.5932 7.1370 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989486393.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:23:11 Heat of formation + Delta-G solvation = -145.843578 kcal Electronic energy + Delta-G solvation = -29520.898661 eV Core-core repulsion = 24858.086662 eV Total energy + Delta-G solvation = -4662.811999 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.130 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -50.64815 -50.16762 -49.72108 -41.36514 -39.95852 -38.60328 -35.94990 -34.15614 -33.22846 -32.61467 -31.50570 -30.04969 -28.56380 -26.69353 -25.77459 -24.65036 -23.87400 -22.52221 -21.71475 -19.99642 -19.43474 -19.18095 -19.07125 -18.41469 -18.16347 -17.58449 -17.32780 -16.91484 -16.67641 -16.44804 -16.13732 -16.09473 -15.78834 -15.56096 -15.41126 -15.31301 -15.11364 -14.76144 -14.37952 -14.24831 -14.13059 -13.70112 -13.49566 -13.38622 -13.08040 -12.90307 -12.82851 -12.79271 -12.71794 -12.53080 -12.31361 -12.09774 -11.99434 -11.68944 -11.47419 -11.03381 -10.86120 -10.25323 -9.71253 -9.65126 -9.01695 -7.91170 -5.20806 -0.45029 -0.29796 1.54067 1.55052 1.59031 1.61023 1.80475 2.15849 2.48880 2.60388 2.83250 3.20034 3.23224 3.36424 3.41015 3.43956 3.79666 3.85207 3.92015 4.01127 4.18141 4.21036 4.34239 4.36157 4.39813 4.48950 4.54277 4.55945 4.63478 4.75451 4.76073 4.83654 4.86984 4.92026 5.09848 5.15857 5.25410 5.42198 5.42552 5.50205 5.59019 6.29689 6.55250 7.12146 7.37781 8.09912 8.33115 9.31585 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.014589 B = 0.002576 C = 0.002382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.846443 B =10867.499440 C =11750.272716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.139 3.861 3 H 0.077 0.923 4 C -0.126 4.126 5 C 0.165 3.835 6 H 0.066 0.934 7 N -0.724 5.724 8 C -0.241 4.241 9 H 0.083 0.917 10 C -0.070 4.070 11 N -0.968 5.968 12 Si 0.968 3.032 13 H -0.275 1.275 14 H -0.302 1.302 15 H -0.280 1.280 16 C 0.085 3.915 17 N -0.607 5.607 18 C 0.529 3.471 19 O -0.572 6.572 20 C -0.099 4.099 21 C -0.081 4.081 22 C -0.078 4.078 23 C 0.053 3.947 24 F -0.130 7.130 25 C 0.090 3.910 26 F -0.126 7.126 27 C -0.155 4.155 28 C 0.125 3.875 29 F -0.129 7.129 30 H 0.051 0.949 31 H 0.081 0.919 32 H 0.050 0.950 33 H 0.090 0.910 34 H 0.073 0.927 35 H 0.376 0.624 36 H 0.250 0.750 37 H 0.086 0.914 38 H 0.060 0.940 39 H 0.141 0.859 40 H 0.120 0.880 41 H 0.178 0.822 42 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.480 10.301 17.601 21.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.036 3.964 3 H 0.095 0.905 4 C -0.164 4.164 5 C 0.054 3.946 6 H 0.084 0.916 7 N -0.363 5.363 8 C -0.372 4.372 9 H 0.101 0.899 10 C -0.263 4.263 11 N -0.618 5.618 12 Si 0.797 3.203 13 H -0.201 1.201 14 H -0.229 1.229 15 H -0.206 1.206 16 C -0.041 4.041 17 N -0.340 5.340 18 C 0.318 3.682 19 O -0.453 6.453 20 C -0.138 4.138 21 C -0.082 4.082 22 C -0.097 4.097 23 C 0.033 3.967 24 F -0.108 7.108 25 C 0.070 3.930 26 F -0.104 7.104 27 C -0.175 4.175 28 C 0.106 3.894 29 F -0.108 7.108 30 H 0.070 0.930 31 H 0.100 0.900 32 H 0.069 0.931 33 H 0.109 0.891 34 H 0.092 0.908 35 H 0.209 0.791 36 H 0.059 0.941 37 H 0.104 0.896 38 H 0.078 0.922 39 H 0.159 0.841 40 H 0.138 0.862 41 H 0.196 0.804 42 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -5.662 10.817 17.877 21.648 hybrid contribution 0.321 -0.776 -0.194 0.862 sum -5.340 10.041 17.683 21.024 Atomic orbital electron populations 1.22045 0.94482 1.01888 1.02659 1.21544 0.94708 0.96101 0.84073 0.90498 1.22911 0.97640 0.99444 0.96418 1.21449 0.95863 0.87893 0.89348 0.91619 1.42447 1.13222 1.28885 1.51768 1.19595 0.91236 1.05605 1.20777 0.89928 1.25501 1.00955 0.99810 1.00026 1.69795 1.34362 1.24643 1.32997 0.85303 0.80126 0.77481 0.77377 1.20110 1.22887 1.20573 1.23204 0.94907 0.87248 0.98720 1.48626 1.52044 1.28512 1.04820 1.20404 0.80004 0.85044 0.82714 1.90682 1.41757 1.29094 1.83729 1.20680 1.05469 1.00181 0.87517 1.19344 0.93194 0.98947 0.96740 1.20986 1.01983 0.94694 0.91991 1.17668 0.88754 0.96047 0.94255 1.91539 1.69572 1.68208 1.81506 1.17310 0.93552 0.98220 0.83952 1.91548 1.91923 1.84071 1.42887 1.21030 1.02572 0.98811 0.95063 1.17251 0.88370 0.92140 0.91670 1.91540 1.69949 1.67876 1.81412 0.93002 0.90022 0.93080 0.89123 0.90833 0.79120 0.94104 0.89617 0.92185 0.84078 0.86150 0.80431 0.80331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.80 9.11 71.98 0.66 -3.15 16 2 C 0.14 3.62 3.46 45.34 0.16 3.77 16 3 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 4 C -0.13 -3.48 6.11 31.79 0.19 -3.28 16 5 C 0.16 5.45 3.69 46.38 0.17 5.62 16 6 H 0.07 2.18 8.13 -2.39 -0.02 2.16 16 7 N -0.72 -31.93 5.28 -316.37 -1.67 -33.60 16 8 C -0.24 -11.88 9.98 84.04 0.84 -11.04 16 9 H 0.08 3.83 7.83 -2.91 -0.02 3.81 16 10 C -0.07 -3.72 5.50 84.86 0.47 -3.25 16 11 N -0.97 -55.52 13.06 21.65 0.28 -55.24 16 12 Si 0.97 42.82 29.55 68.60 2.03 44.85 16 13 H -0.28 -11.60 7.11 99.48 0.71 -10.90 16 14 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 15 H -0.28 -11.97 7.11 99.48 0.71 -11.27 16 16 C 0.08 2.42 6.38 86.86 0.55 2.97 16 17 N -0.61 -16.11 3.06 -788.02 -2.41 -18.53 16 18 C 0.53 13.88 7.63 87.66 0.67 14.54 16 19 O -0.57 -18.33 15.08 -3.05 -0.05 -18.38 16 20 C -0.10 -1.89 4.61 29.10 0.13 -1.75 16 21 C -0.08 -1.56 4.38 -19.82 -0.09 -1.64 16 22 C -0.08 -1.34 9.66 22.30 0.22 -1.12 16 23 C 0.05 1.02 7.31 22.40 0.16 1.19 16 24 F -0.13 -2.70 17.18 44.97 0.77 -1.93 16 25 C 0.09 1.72 7.31 22.40 0.16 1.88 16 26 F -0.13 -2.54 17.18 44.97 0.77 -1.77 16 27 C -0.16 -2.71 10.00 22.35 0.22 -2.49 16 28 C 0.13 2.54 7.24 22.37 0.16 2.70 16 29 F -0.13 -2.93 16.56 44.97 0.74 -2.18 16 30 H 0.05 1.45 6.89 -2.39 -0.02 1.43 16 31 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 32 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 34 H 0.07 2.14 7.70 -2.39 -0.02 2.12 16 35 H 0.38 18.19 7.71 -92.71 -0.71 17.48 16 36 H 0.25 14.13 8.31 -92.70 -0.77 13.36 16 37 H 0.09 2.18 7.48 -2.39 -0.02 2.16 16 38 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.14 1.92 7.76 -2.39 -0.02 1.90 16 40 H 0.12 2.15 7.79 -2.39 -0.02 2.13 16 41 H 0.18 2.20 8.06 -2.91 -0.02 2.18 16 42 H 0.18 2.27 8.06 -2.91 -0.02 2.24 16 Total: -1.00 -62.59 367.05 5.51 -57.07 By element: Atomic # 1 Polarization: 24.40 SS G_CDS: 0.36 Total: 24.76 kcal Atomic # 6 Polarization: 0.27 SS G_CDS: 4.68 Total: 4.95 kcal Atomic # 7 Polarization: -103.57 SS G_CDS: -3.80 Total: -107.37 kcal Atomic # 8 Polarization: -18.33 SS G_CDS: -0.05 Total: -18.38 kcal Atomic # 9 Polarization: -8.17 SS G_CDS: 2.29 Total: -5.88 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Total: -62.59 5.51 -57.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989486393.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.769 kcal (2) G-P(sol) polarization free energy of solvation -62.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds