Wall clock time and date at job start Wed Apr 1 2020 02:23:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.86934 * 2 1 4 4 C 1.54328 * 110.01085 * 121.09481 * 2 1 3 5 5 C 1.55153 * 102.94121 * 141.68296 * 4 2 1 6 6 H 1.09000 * 111.00083 * 206.42360 * 5 4 2 7 7 N 1.46500 * 111.00351 * 82.61473 * 5 4 2 8 8 C 1.36930 * 120.00219 * 154.99882 * 7 5 4 9 9 H 1.07993 * 120.00201 * 359.97438 * 8 7 5 10 10 C 1.38817 * 119.99971 * 180.02562 * 8 7 5 11 11 N 1.31618 * 120.00119 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 119.99984 * 179.97438 * 10 8 7 13 13 H 1.48510 * 109.46837 * 59.99654 * 12 10 8 14 14 H 1.48491 * 109.47252 * 179.97438 * 12 10 8 15 15 H 1.48505 * 109.47117 * 300.00153 * 12 10 8 16 16 C 1.55125 * 101.48794 * 324.33415 * 5 4 2 17 17 N 1.47022 * 109.88650 * 238.98289 * 2 1 3 18 18 C 1.34770 * 125.64756 * 61.44859 * 17 2 1 19 19 O 1.21278 * 120.00228 * 0.02562 * 18 17 2 20 20 C 1.50701 * 119.99916 * 179.97438 * 18 17 2 21 21 C 1.50706 * 109.47103 * 179.97438 * 20 18 17 22 22 C 1.38240 * 119.98055 * 264.72749 * 21 20 18 23 23 C 1.38361 * 120.02197 * 179.72378 * 22 21 20 24 24 F 1.35105 * 120.00493 * 180.27015 * 23 22 21 25 25 C 1.38684 * 119.98344 * 0.57724 * 23 22 21 26 26 F 1.35094 * 120.02604 * 179.68297 * 25 23 22 27 27 C 1.38357 * 119.95195 * 359.69513 * 25 23 22 28 28 C 1.38423 * 119.97548 * 85.00492 * 21 20 18 29 29 F 1.35108 * 119.99004 * 359.97438 * 28 21 20 30 30 H 1.08996 * 109.46894 * 179.56297 * 1 2 3 31 31 H 1.08997 * 109.47517 * 299.56475 * 1 2 3 32 32 H 1.09000 * 109.46727 * 59.56841 * 1 2 3 33 33 H 1.08998 * 110.71940 * 260.05448 * 4 2 1 34 34 H 1.09004 * 110.71455 * 23.14653 * 4 2 1 35 35 H 0.97003 * 119.99720 * 334.99968 * 7 5 4 36 36 H 0.97004 * 119.99658 * 180.02562 * 11 10 8 37 37 H 1.08994 * 110.49711 * 278.45429 * 16 5 4 38 38 H 1.09008 * 110.34040 * 156.05645 * 16 5 4 39 39 H 1.08999 * 109.46795 * 60.00645 * 20 18 17 40 40 H 1.08999 * 109.47503 * 299.99965 * 20 18 17 41 41 H 1.08003 * 119.98879 * 359.97438 * 22 21 20 42 42 H 1.07997 * 120.00928 * 180.02562 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0581 -0.7489 1.2417 5 6 3.2918 -1.5107 0.6895 6 1 3.4921 -2.4073 1.2761 7 7 4.4699 -0.6409 0.6462 8 6 5.7253 -1.1857 0.6938 9 1 5.8470 -2.2564 0.7636 10 6 6.8415 -0.3614 0.6534 11 7 6.6932 0.9436 0.5688 12 14 8.5541 -1.1045 0.7190 13 1 8.7414 -2.0192 -0.4359 14 1 9.5668 -0.0201 0.6603 15 1 8.7155 -1.8653 1.9841 16 6 2.8131 -1.8794 -0.7393 17 7 2.0301 -0.7124 -1.1849 18 6 1.8051 -0.3603 -2.4662 19 8 1.1388 0.6214 -2.7172 20 6 2.3824 -1.1859 -3.5870 21 6 1.9861 -0.5835 -4.9103 22 6 0.8750 -1.0595 -5.5810 23 6 0.5070 -0.5032 -6.7932 24 9 -0.5821 -0.9651 -7.4458 25 6 1.2602 0.5243 -7.3413 26 9 0.9054 1.0637 -8.5280 27 6 2.3753 0.9963 -6.6720 28 6 2.7383 0.4424 -5.4561 29 9 3.8269 0.9034 -4.8022 30 1 -0.3633 -1.0276 -0.0078 31 1 -0.3634 0.5070 0.8938 32 1 -0.3633 0.5205 -0.8861 33 1 2.3555 -0.0451 2.0190 34 1 1.3092 -1.4449 1.6197 35 1 4.3606 0.3209 0.5839 36 1 7.4733 1.5195 0.5401 37 1 2.1853 -2.7700 -0.7135 38 1 3.6683 -2.0359 -1.3968 39 1 1.9992 -2.2043 -3.5226 40 1 3.4692 -1.2007 -3.5050 41 1 0.2915 -1.8633 -5.1566 42 1 2.9622 1.7966 -7.0978 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989486395.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:23:19 Heat of formation + Delta-G solvation = -129.541156 kcal Electronic energy + Delta-G solvation = -30046.300201 eV Core-core repulsion = 25384.195128 eV Total energy + Delta-G solvation = -4662.105073 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.130 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.73585 -49.07940 -48.80635 -40.13078 -38.95586 -37.29744 -34.03068 -33.10232 -31.55481 -31.31986 -30.57444 -28.51778 -27.54579 -25.51305 -23.85620 -23.71320 -22.90090 -21.58123 -20.03968 -18.75514 -18.44286 -18.12199 -17.45793 -17.36636 -16.96259 -16.57575 -16.05797 -15.78521 -15.49729 -15.21848 -15.14328 -14.71479 -14.66371 -14.52935 -14.29562 -13.96294 -13.71349 -13.46888 -13.15035 -13.04261 -12.76877 -12.48735 -12.25493 -12.13848 -11.86273 -11.74954 -11.66550 -11.61734 -11.18560 -10.99491 -10.80023 -10.69792 -10.36959 -10.07926 -9.76902 -9.70188 -9.33744 -9.08462 -8.74717 -8.29584 -7.09743 -5.86749 -3.17952 0.48989 0.58031 2.80217 2.87724 3.33400 3.37100 3.39879 3.41885 3.43809 3.76274 4.09668 4.15453 4.28370 4.48922 4.65914 4.71521 5.04553 5.10531 5.15605 5.26081 5.27690 5.32635 5.42165 5.47155 5.49972 5.54436 5.63390 5.70607 5.75087 5.81145 5.84042 5.94987 6.14002 6.17632 6.36522 6.38069 6.40742 6.53719 6.65051 6.74704 7.58846 7.86408 8.30115 8.41782 9.41974 9.96923 10.31261 11.34825 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.012460 B = 0.003239 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2246.577298 B = 8642.012899 C =10122.097073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.138 3.862 3 H 0.074 0.926 4 C -0.139 4.139 5 C 0.170 3.830 6 H 0.074 0.926 7 N -0.711 5.711 8 C -0.252 4.252 9 H 0.072 0.928 10 C -0.006 4.006 11 N -0.927 5.927 12 Si 0.907 3.093 13 H -0.285 1.285 14 H -0.291 1.291 15 H -0.285 1.285 16 C 0.065 3.935 17 N -0.596 5.596 18 C 0.534 3.466 19 O -0.546 6.546 20 C -0.102 4.102 21 C -0.074 4.074 22 C -0.085 4.085 23 C 0.057 3.943 24 F -0.126 7.126 25 C 0.095 3.905 26 F -0.123 7.123 27 C -0.163 4.163 28 C 0.143 3.857 29 F -0.115 7.115 30 H 0.052 0.948 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.083 0.917 34 H 0.074 0.926 35 H 0.386 0.614 36 H 0.258 0.742 37 H 0.057 0.943 38 H 0.080 0.920 39 H 0.110 0.890 40 H 0.116 0.884 41 H 0.155 0.845 42 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.713 -5.805 -10.393 17.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.035 3.965 3 H 0.092 0.908 4 C -0.178 4.178 5 C 0.057 3.943 6 H 0.092 0.908 7 N -0.350 5.350 8 C -0.383 4.383 9 H 0.090 0.910 10 C -0.203 4.203 11 N -0.573 5.573 12 Si 0.738 3.262 13 H -0.212 1.212 14 H -0.217 1.217 15 H -0.212 1.212 16 C -0.061 4.061 17 N -0.329 5.329 18 C 0.322 3.678 19 O -0.425 6.425 20 C -0.141 4.141 21 C -0.075 4.075 22 C -0.104 4.104 23 C 0.037 3.963 24 F -0.105 7.105 25 C 0.075 3.925 26 F -0.101 7.101 27 C -0.183 4.183 28 C 0.123 3.877 29 F -0.093 7.093 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.102 0.898 34 H 0.092 0.908 35 H 0.220 0.780 36 H 0.067 0.933 37 H 0.075 0.925 38 H 0.098 0.902 39 H 0.128 0.872 40 H 0.134 0.866 41 H 0.173 0.827 42 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -12.894 -5.310 -10.613 17.524 hybrid contribution 0.973 0.095 -0.299 1.022 sum -11.921 -5.215 -10.913 16.983 Atomic orbital electron populations 1.22127 0.95429 1.01670 1.02485 1.21486 0.93513 0.96796 0.84662 0.90834 1.23088 0.98281 1.00081 0.96396 1.21340 0.87029 0.94425 0.91519 0.90770 1.42330 1.00069 1.05494 1.87144 1.19178 0.83151 0.91991 1.43961 0.90984 1.24773 0.97965 0.95327 1.02272 1.69657 1.29327 1.02112 1.56240 0.86284 0.84254 0.77803 0.77879 1.21171 1.21671 1.21158 1.23513 0.94406 0.86817 1.01405 1.48374 1.51506 1.28655 1.04349 1.19770 0.80546 0.85146 0.82387 1.90682 1.40672 1.27682 1.83427 1.20620 1.04363 1.00176 0.88968 1.19290 0.95253 0.96367 0.96637 1.20740 0.96335 1.00838 0.92473 1.17492 0.87554 0.97436 0.93842 1.91539 1.50952 1.87610 1.80371 1.17189 0.95958 0.95415 0.83947 1.91548 1.91307 1.84611 1.42652 1.20916 0.98186 1.03690 0.95509 1.17114 0.85736 0.94193 0.90684 1.91628 1.50472 1.87211 1.79968 0.92913 0.92036 0.91605 0.89804 0.90782 0.77971 0.93260 0.92458 0.90183 0.87167 0.86566 0.82718 0.82283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.11 9.11 37.16 0.34 -1.77 16 2 C 0.14 2.14 3.45 -66.95 -0.23 1.91 16 3 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 4 C -0.14 -2.02 6.08 -24.90 -0.15 -2.17 16 5 C 0.17 2.90 3.72 -65.67 -0.24 2.65 16 6 H 0.07 1.22 8.09 -51.93 -0.42 0.80 16 7 N -0.71 -16.24 5.25 -51.24 -0.27 -16.51 16 8 C -0.25 -6.44 9.96 -15.06 -0.15 -6.59 16 9 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 10 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 11 N -0.93 -26.98 13.06 55.49 0.72 -26.26 16 12 Si 0.91 21.32 29.55 -169.99 -5.02 16.29 16 13 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 14 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 15 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 16 C 0.06 0.96 6.41 -2.41 -0.02 0.95 16 17 N -0.60 -9.37 3.06 -162.88 -0.50 -9.87 16 18 C 0.53 8.58 7.63 -10.99 -0.08 8.50 16 19 O -0.55 -10.33 15.06 5.56 0.08 -10.25 16 20 C -0.10 -1.27 4.60 -29.03 -0.13 -1.40 16 21 C -0.07 -0.91 4.38 -104.55 -0.46 -1.37 16 22 C -0.09 -0.90 9.65 -39.54 -0.38 -1.28 16 23 C 0.06 0.65 7.31 -39.37 -0.29 0.36 16 24 F -0.13 -1.48 17.18 2.25 0.04 -1.44 16 25 C 0.10 1.11 7.31 -39.37 -0.29 0.82 16 26 F -0.12 -1.46 17.18 2.25 0.04 -1.42 16 27 C -0.16 -1.87 10.00 -39.46 -0.39 -2.26 16 28 C 0.14 1.89 7.24 -39.43 -0.29 1.61 16 29 F -0.11 -1.79 16.56 2.25 0.04 -1.75 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.99 6.87 -51.93 -0.36 0.64 16 33 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.07 0.88 7.85 -51.93 -0.41 0.47 16 35 H 0.39 9.77 7.86 -40.82 -0.32 9.45 16 36 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.08 1.28 7.48 -51.92 -0.39 0.89 16 39 H 0.11 1.00 8.05 -51.93 -0.42 0.58 16 40 H 0.12 1.51 7.50 -51.93 -0.39 1.12 16 41 H 0.16 1.25 8.06 -52.48 -0.42 0.83 16 42 H 0.16 1.49 8.06 -52.49 -0.42 1.07 16 LS Contribution 367.24 15.07 5.53 5.53 Total: -1.00 -30.80 367.24 -7.40 -38.21 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -5.21 Total: 7.78 kcal Atomic # 6 Polarization: 2.55 SS G_CDS: -2.86 Total: -0.31 kcal Atomic # 7 Polarization: -52.60 SS G_CDS: -0.04 Total: -52.64 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: 0.08 Total: -10.25 kcal Atomic # 9 Polarization: -4.73 SS G_CDS: 0.11 Total: -4.61 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -30.80 -7.40 -38.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989486395.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.335 kcal (2) G-P(sol) polarization free energy of solvation -30.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds