Wall clock time and date at job start Wed Apr 1 2020 02:23:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.86934 * 2 1 4 4 C 1.54328 * 110.01085 * 121.09481 * 2 1 3 5 5 C 1.55153 * 102.94121 * 141.68296 * 4 2 1 6 6 H 1.09000 * 111.00083 * 206.42360 * 5 4 2 7 7 N 1.46500 * 111.00351 * 82.61473 * 5 4 2 8 8 C 1.36930 * 120.00219 * 154.99882 * 7 5 4 9 9 H 1.07993 * 120.00201 * 359.97438 * 8 7 5 10 10 C 1.38817 * 119.99971 * 180.02562 * 8 7 5 11 11 N 1.31618 * 120.00119 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 119.99984 * 179.97438 * 10 8 7 13 13 H 1.48510 * 109.46837 * 59.99654 * 12 10 8 14 14 H 1.48491 * 109.47252 * 179.97438 * 12 10 8 15 15 H 1.48505 * 109.47117 * 300.00153 * 12 10 8 16 16 C 1.55125 * 101.48794 * 324.33415 * 5 4 2 17 17 N 1.47022 * 109.88650 * 238.98289 * 2 1 3 18 18 C 1.34770 * 125.64756 * 61.44859 * 17 2 1 19 19 O 1.21278 * 120.00228 * 0.02562 * 18 17 2 20 20 C 1.50701 * 119.99916 * 179.97438 * 18 17 2 21 21 C 1.50706 * 109.47103 * 179.97438 * 20 18 17 22 22 C 1.38240 * 119.98055 * 264.72749 * 21 20 18 23 23 C 1.38361 * 120.02197 * 179.72378 * 22 21 20 24 24 F 1.35105 * 120.00493 * 180.27015 * 23 22 21 25 25 C 1.38684 * 119.98344 * 0.57724 * 23 22 21 26 26 F 1.35094 * 120.02604 * 179.68297 * 25 23 22 27 27 C 1.38357 * 119.95195 * 359.69513 * 25 23 22 28 28 C 1.38423 * 119.97548 * 85.00492 * 21 20 18 29 29 F 1.35108 * 119.99004 * 359.97438 * 28 21 20 30 30 H 1.08996 * 109.46894 * 179.56297 * 1 2 3 31 31 H 1.08997 * 109.47517 * 299.56475 * 1 2 3 32 32 H 1.09000 * 109.46727 * 59.56841 * 1 2 3 33 33 H 1.08998 * 110.71940 * 260.05448 * 4 2 1 34 34 H 1.09004 * 110.71455 * 23.14653 * 4 2 1 35 35 H 0.97003 * 119.99720 * 334.99968 * 7 5 4 36 36 H 0.97004 * 119.99658 * 180.02562 * 11 10 8 37 37 H 1.08994 * 110.49711 * 278.45429 * 16 5 4 38 38 H 1.09008 * 110.34040 * 156.05645 * 16 5 4 39 39 H 1.08999 * 109.46795 * 60.00645 * 20 18 17 40 40 H 1.08999 * 109.47503 * 299.99965 * 20 18 17 41 41 H 1.08003 * 119.98879 * 359.97438 * 22 21 20 42 42 H 1.07997 * 120.00928 * 180.02562 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0581 -0.7489 1.2417 5 6 3.2918 -1.5107 0.6895 6 1 3.4921 -2.4073 1.2761 7 7 4.4699 -0.6409 0.6462 8 6 5.7253 -1.1857 0.6938 9 1 5.8470 -2.2564 0.7636 10 6 6.8415 -0.3614 0.6534 11 7 6.6932 0.9436 0.5688 12 14 8.5541 -1.1045 0.7190 13 1 8.7414 -2.0192 -0.4359 14 1 9.5668 -0.0201 0.6603 15 1 8.7155 -1.8653 1.9841 16 6 2.8131 -1.8794 -0.7393 17 7 2.0301 -0.7124 -1.1849 18 6 1.8051 -0.3603 -2.4662 19 8 1.1388 0.6214 -2.7172 20 6 2.3824 -1.1859 -3.5870 21 6 1.9861 -0.5835 -4.9103 22 6 0.8750 -1.0595 -5.5810 23 6 0.5070 -0.5032 -6.7932 24 9 -0.5821 -0.9651 -7.4458 25 6 1.2602 0.5243 -7.3413 26 9 0.9054 1.0637 -8.5280 27 6 2.3753 0.9963 -6.6720 28 6 2.7383 0.4424 -5.4561 29 9 3.8269 0.9034 -4.8022 30 1 -0.3633 -1.0276 -0.0078 31 1 -0.3634 0.5070 0.8938 32 1 -0.3633 0.5205 -0.8861 33 1 2.3555 -0.0451 2.0190 34 1 1.3092 -1.4449 1.6197 35 1 4.3606 0.3209 0.5839 36 1 7.4733 1.5195 0.5401 37 1 2.1853 -2.7700 -0.7135 38 1 3.6683 -2.0359 -1.3968 39 1 1.9992 -2.2043 -3.5226 40 1 3.4692 -1.2007 -3.5050 41 1 0.2915 -1.8633 -5.1566 42 1 2.9622 1.7966 -7.0978 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989486395.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:23:18 Heat of formation + Delta-G solvation = -147.083042 kcal Electronic energy + Delta-G solvation = -30047.060874 eV Core-core repulsion = 25384.195128 eV Total energy + Delta-G solvation = -4662.865746 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.130 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -50.65848 -50.18571 -49.72866 -41.32347 -39.96546 -38.58854 -35.76076 -34.14084 -33.13611 -32.56793 -31.50245 -30.09763 -28.55883 -26.67372 -25.68214 -24.67718 -23.99240 -22.71727 -21.36771 -19.93194 -19.43668 -19.23531 -19.07384 -18.43219 -18.14468 -17.58776 -17.30068 -16.85084 -16.61471 -16.46432 -16.16591 -16.08863 -15.77800 -15.51520 -15.49878 -15.28116 -15.10560 -14.79285 -14.51960 -14.16606 -13.98939 -13.55614 -13.39098 -13.20515 -13.18333 -12.85282 -12.82259 -12.79672 -12.63991 -12.53795 -12.24586 -12.21771 -12.02622 -11.60178 -11.44827 -11.02474 -10.85384 -10.25968 -9.72364 -9.60737 -8.94532 -7.90584 -5.19487 -0.45886 -0.31028 1.51048 1.52777 1.58806 1.63923 1.84528 2.23795 2.47613 2.59198 2.82899 3.19496 3.22854 3.37088 3.41124 3.54980 3.79898 3.89340 3.96950 4.00767 4.17078 4.21018 4.34412 4.39075 4.42207 4.51341 4.54934 4.62673 4.73843 4.75399 4.81219 4.86068 4.90219 4.99504 5.15045 5.22677 5.27452 5.39310 5.48293 5.54951 5.58876 6.29993 6.64727 7.19067 7.36710 8.12629 8.33978 9.32580 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.012460 B = 0.003239 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2246.577298 B = 8642.012899 C =10122.097073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.134 3.866 3 H 0.034 0.966 4 C -0.124 4.124 5 C 0.155 3.845 6 H 0.090 0.910 7 N -0.727 5.727 8 C -0.235 4.235 9 H 0.088 0.912 10 C -0.076 4.076 11 N -0.972 5.972 12 Si 0.968 3.032 13 H -0.276 1.276 14 H -0.306 1.306 15 H -0.276 1.276 16 C 0.075 3.925 17 N -0.600 5.600 18 C 0.524 3.476 19 O -0.582 6.582 20 C -0.095 4.095 21 C -0.080 4.080 22 C -0.072 4.072 23 C 0.057 3.943 24 F -0.126 7.126 25 C 0.091 3.909 26 F -0.125 7.125 27 C -0.159 4.159 28 C 0.117 3.883 29 F -0.136 7.136 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.043 0.957 33 H 0.069 0.931 34 H 0.113 0.887 35 H 0.368 0.632 36 H 0.247 0.753 37 H 0.104 0.896 38 H 0.068 0.932 39 H 0.152 0.848 40 H 0.107 0.893 41 H 0.187 0.813 42 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.281 -8.867 -10.395 19.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.030 3.970 3 H 0.052 0.948 4 C -0.163 4.163 5 C 0.045 3.955 6 H 0.108 0.892 7 N -0.365 5.365 8 C -0.367 4.367 9 H 0.106 0.894 10 C -0.268 4.268 11 N -0.623 5.623 12 Si 0.798 3.202 13 H -0.202 1.202 14 H -0.233 1.233 15 H -0.202 1.202 16 C -0.050 4.050 17 N -0.332 5.332 18 C 0.314 3.686 19 O -0.463 6.463 20 C -0.134 4.134 21 C -0.082 4.082 22 C -0.091 4.091 23 C 0.036 3.964 24 F -0.105 7.105 25 C 0.070 3.930 26 F -0.103 7.103 27 C -0.178 4.178 28 C 0.097 3.903 29 F -0.115 7.115 30 H 0.093 0.907 31 H 0.095 0.905 32 H 0.062 0.938 33 H 0.088 0.912 34 H 0.132 0.868 35 H 0.200 0.800 36 H 0.056 0.944 37 H 0.122 0.878 38 H 0.086 0.914 39 H 0.170 0.830 40 H 0.126 0.874 41 H 0.204 0.796 42 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -14.499 -8.452 -10.609 19.855 hybrid contribution 1.340 1.023 -0.299 1.712 sum -13.158 -7.429 -10.908 18.637 Atomic orbital electron populations 1.22006 0.93304 1.02891 1.02190 1.21506 0.95133 0.95046 0.85291 0.94809 1.23005 0.97842 1.00049 0.95396 1.21704 0.86031 0.94336 0.93448 0.89234 1.42551 1.01205 1.05333 1.87435 1.19660 0.84184 0.92567 1.40283 0.89441 1.25532 1.01578 0.95661 1.04017 1.69836 1.29372 1.03531 1.59515 0.85292 0.79992 0.76635 0.78312 1.20222 1.23260 1.20191 1.23416 0.94824 0.87873 0.98893 1.48507 1.51348 1.28908 1.04451 1.20422 0.80064 0.85014 0.83104 1.90662 1.42408 1.29241 1.83966 1.20641 1.03658 1.01624 0.87476 1.19390 0.95730 0.96307 0.96770 1.20981 0.95503 1.00931 0.91671 1.17605 0.87391 0.97283 0.94090 1.91542 1.50954 1.87575 1.80428 1.17267 0.96099 0.95666 0.83942 1.91543 1.91314 1.84707 1.42779 1.21009 0.98181 1.03742 0.94892 1.17450 0.85905 0.95365 0.91574 1.91571 1.51671 1.87685 1.80539 0.90732 0.90482 0.93820 0.91180 0.86822 0.80047 0.94420 0.87827 0.91384 0.83018 0.87447 0.79617 0.80832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.57 9.11 71.98 0.66 -2.91 16 2 C 0.13 4.01 3.45 45.34 0.16 4.16 16 3 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 4 C -0.12 -3.32 6.08 31.78 0.19 -3.13 16 5 C 0.15 4.94 3.72 46.46 0.17 5.11 16 6 H 0.09 2.62 8.09 -2.39 -0.02 2.60 16 7 N -0.73 -33.11 5.25 -316.03 -1.66 -34.77 16 8 C -0.24 -11.89 9.96 84.04 0.84 -11.05 16 9 H 0.09 4.07 7.83 -2.91 -0.02 4.05 16 10 C -0.08 -4.15 5.50 84.86 0.47 -3.68 16 11 N -0.97 -58.61 13.06 21.65 0.28 -58.33 16 12 Si 0.97 44.22 29.55 68.60 2.03 46.25 16 13 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 14 H -0.31 -14.57 7.11 99.48 0.71 -13.86 16 15 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 16 C 0.07 1.99 6.41 86.93 0.56 2.55 16 17 N -0.60 -17.94 3.06 -787.62 -2.41 -20.35 16 18 C 0.52 16.37 7.63 87.66 0.67 17.04 16 19 O -0.58 -22.11 15.06 -3.02 -0.05 -22.15 16 20 C -0.09 -2.19 4.60 29.10 0.13 -2.05 16 21 C -0.08 -1.88 4.38 -19.82 -0.09 -1.96 16 22 C -0.07 -1.36 9.65 22.30 0.22 -1.15 16 23 C 0.06 1.19 7.31 22.41 0.16 1.36 16 24 F -0.13 -2.71 17.18 44.97 0.77 -1.94 16 25 C 0.09 2.02 7.31 22.40 0.16 2.18 16 26 F -0.12 -2.86 17.18 44.97 0.77 -2.09 16 27 C -0.16 -3.59 10.00 22.35 0.22 -3.36 16 28 C 0.12 3.10 7.24 22.37 0.16 3.27 16 29 F -0.14 -4.43 16.56 44.97 0.74 -3.68 16 30 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.04 1.27 6.87 -2.39 -0.02 1.26 16 33 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.11 2.18 7.85 -2.38 -0.02 2.16 16 35 H 0.37 19.22 7.86 -92.71 -0.73 18.49 16 36 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 37 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.07 2.01 7.48 -2.38 -0.02 1.99 16 39 H 0.15 2.13 8.05 -2.39 -0.02 2.11 16 40 H 0.11 2.71 7.50 -2.39 -0.02 2.69 16 41 H 0.19 2.26 8.06 -2.91 -0.02 2.23 16 42 H 0.17 3.24 8.06 -2.91 -0.02 3.21 16 Total: -1.00 -69.67 367.24 5.51 -64.16 By element: Atomic # 1 Polarization: 26.19 SS G_CDS: 0.34 Total: 26.54 kcal Atomic # 6 Polarization: 1.68 SS G_CDS: 4.68 Total: 6.36 kcal Atomic # 7 Polarization: -109.66 SS G_CDS: -3.79 Total: -113.45 kcal Atomic # 8 Polarization: -22.11 SS G_CDS: -0.05 Total: -22.15 kcal Atomic # 9 Polarization: -10.00 SS G_CDS: 2.29 Total: -7.71 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -69.67 5.51 -64.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989486395.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.921 kcal (2) G-P(sol) polarization free energy of solvation -69.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds