Wall clock time and date at job start Wed Apr 1 2020 02:22:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.99623 * 2 1 4 4 C 1.54320 * 109.88005 * 121.08925 * 2 1 3 5 5 C 1.55157 * 102.94238 * 141.61274 * 4 2 1 6 6 H 1.09000 * 111.00374 * 82.56905 * 5 4 2 7 7 N 1.46503 * 111.00757 * 206.38927 * 5 4 2 8 8 C 1.36936 * 120.00155 * 205.00105 * 7 5 4 9 9 H 1.08007 * 119.99865 * 359.97438 * 8 7 5 10 10 C 1.38809 * 120.00277 * 179.97438 * 8 7 5 11 11 N 1.31625 * 119.99753 * 359.97438 * 10 8 7 12 12 Si 1.86796 * 120.00367 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.46862 * 0.02562 * 12 10 8 14 14 H 1.48494 * 109.47446 * 120.00105 * 12 10 8 15 15 H 1.48503 * 109.47192 * 240.00232 * 12 10 8 16 16 C 1.55131 * 101.48730 * 324.33349 * 5 4 2 17 17 N 1.47019 * 109.88447 * 238.90175 * 2 1 3 18 18 C 1.34771 * 125.65027 * 61.60340 * 17 2 1 19 19 O 1.21565 * 120.00032 * 5.33758 * 18 17 2 20 20 C 1.47698 * 120.00123 * 185.33828 * 18 17 2 21 21 C 1.39656 * 120.16762 * 36.35632 * 20 18 17 22 22 C 1.37854 * 119.88023 * 179.97438 * 21 20 18 23 23 C 1.38458 * 120.21977 * 359.97438 * 22 21 20 24 24 C 1.50697 * 119.83129 * 180.02562 * 23 22 21 25 25 F 1.39903 * 109.47329 * 119.97378 * 24 23 22 26 26 F 1.39908 * 109.46965 * 239.97035 * 24 23 22 27 27 C 1.38206 * 120.33402 * 359.97438 * 23 22 21 28 28 C 1.38315 * 120.12268 * 0.28407 * 27 23 22 29 29 F 1.35098 * 120.11454 * 179.74223 * 28 27 23 30 30 H 1.09006 * 109.46915 * 179.64520 * 1 2 3 31 31 H 1.08994 * 109.47500 * 299.64783 * 1 2 3 32 32 H 1.09009 * 109.46891 * 59.64759 * 1 2 3 33 33 H 1.09004 * 110.72388 * 259.97505 * 4 2 1 34 34 H 1.09004 * 110.72092 * 23.24965 * 4 2 1 35 35 H 0.97002 * 119.99898 * 24.99396 * 7 5 4 36 36 H 0.96998 * 119.99499 * 180.02562 * 11 10 8 37 37 H 1.08997 * 110.49759 * 278.45834 * 16 5 4 38 38 H 1.09003 * 110.34766 * 156.05722 * 16 5 4 39 39 H 1.08007 * 120.06089 * 359.97438 * 21 20 18 40 40 H 1.08006 * 119.89433 * 180.02562 * 22 21 20 41 41 H 1.08996 * 109.47321 * 359.97339 * 24 23 22 42 42 H 1.08005 * 119.93483 * 180.02562 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0548 -0.7494 1.2428 5 6 3.2876 -1.5141 0.6926 6 1 4.1654 -0.8687 0.6605 7 7 3.5537 -2.7190 1.4824 8 6 4.8171 -3.2456 1.5236 9 1 5.6173 -2.7729 0.9734 10 6 5.0693 -4.3868 2.2724 11 7 4.0942 -4.9626 2.9433 12 14 6.7926 -5.1056 2.3280 13 1 7.7013 -4.2774 1.4951 14 1 7.2796 -5.1160 3.7307 15 1 6.7669 -6.4943 1.8026 16 6 2.8100 -1.8826 -0.7366 17 7 2.0301 -0.7141 -1.1838 18 6 1.8075 -0.3622 -2.4656 19 8 1.2251 0.6744 -2.7190 20 6 2.2710 -1.2360 -3.5625 21 6 2.2276 -2.6245 -3.4197 22 6 2.6612 -3.4345 -4.4475 23 6 3.1390 -2.8759 -5.6208 24 6 3.6103 -3.7695 -6.7390 25 9 2.8440 -3.5274 -7.8841 26 9 4.9560 -3.5028 -7.0135 27 6 3.1850 -1.5029 -5.7721 28 6 2.7584 -0.6770 -4.7479 29 9 2.8083 0.6651 -4.8940 30 1 -0.3633 -1.0277 -0.0064 31 1 -0.3634 0.5083 0.8931 32 1 -0.3633 0.5193 -0.8869 33 1 2.3528 -0.0458 2.0201 34 1 1.3050 -1.4458 1.6184 35 1 2.8349 -3.1437 1.9764 36 1 4.2706 -5.7599 3.4668 37 1 2.1802 -2.7718 -0.7112 38 1 3.6657 -2.0413 -1.3930 39 1 1.8549 -3.0630 -2.5057 40 1 2.6274 -4.5084 -4.3375 41 1 3.4999 -4.8124 -6.4418 42 1 3.5585 -1.0741 -6.6903 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989604492.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:22:55 Heat of formation + Delta-G solvation = -136.248550 kcal Electronic energy + Delta-G solvation = -29944.009895 eV Core-core repulsion = 25281.613967 eV Total energy + Delta-G solvation = -4662.395927 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.130 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.33066 -49.07287 -47.30999 -40.46881 -38.94869 -37.40762 -34.31717 -33.07034 -31.52234 -31.27061 -30.93464 -28.53666 -27.06917 -25.60530 -24.09729 -23.36011 -23.01666 -21.57503 -20.43679 -19.33829 -18.22781 -17.84898 -17.55729 -17.50960 -17.24305 -16.38954 -16.31942 -16.06686 -15.71042 -15.44565 -14.60917 -14.43421 -14.23848 -14.16557 -14.01229 -13.71963 -13.67555 -13.39356 -13.28304 -13.08071 -12.80218 -12.71135 -12.64795 -12.39662 -12.21496 -11.93323 -11.74370 -11.38054 -11.24526 -11.08739 -10.86655 -10.73900 -10.35990 -10.10788 -9.94414 -9.84060 -9.53296 -9.14849 -9.10626 -8.49917 -7.19716 -5.94810 -3.26160 0.27019 0.79390 2.53645 2.90938 3.21917 3.28559 3.32690 3.40066 3.41324 3.74347 3.84009 4.15048 4.30298 4.46971 4.55775 4.63204 4.65572 4.86262 4.92619 5.01267 5.14974 5.19482 5.40420 5.46773 5.48793 5.56772 5.60770 5.68716 5.72236 5.73892 5.80352 5.96776 6.03104 6.07950 6.23347 6.32590 6.33286 6.37940 6.53477 6.71705 7.55163 7.59874 8.13621 8.22694 9.35014 9.87101 10.22270 11.26947 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.008701 B = 0.003778 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3217.320470 B = 7410.446458 C = 9930.161941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.139 3.861 3 H 0.075 0.925 4 C -0.138 4.138 5 C 0.173 3.827 6 H 0.070 0.930 7 N -0.710 5.710 8 C -0.251 4.251 9 H 0.073 0.927 10 C -0.006 4.006 11 N -0.928 5.928 12 Si 0.907 3.093 13 H -0.279 1.279 14 H -0.290 1.290 15 H -0.290 1.290 16 C 0.068 3.932 17 N -0.600 5.600 18 C 0.570 3.430 19 O -0.532 6.532 20 C -0.138 4.138 21 C -0.057 4.057 22 C -0.100 4.100 23 C -0.126 4.126 24 C 0.314 3.686 25 F -0.198 7.198 26 F -0.196 7.196 27 C -0.125 4.125 28 C 0.150 3.850 29 F -0.117 7.117 30 H 0.057 0.943 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.388 0.612 36 H 0.257 0.743 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.153 0.847 40 H 0.146 0.854 41 H 0.127 0.873 42 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.075 3.224 -15.025 16.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.035 3.965 3 H 0.093 0.907 4 C -0.176 4.176 5 C 0.060 3.940 6 H 0.088 0.912 7 N -0.350 5.350 8 C -0.382 4.382 9 H 0.091 0.909 10 C -0.203 4.203 11 N -0.575 5.575 12 Si 0.737 3.263 13 H -0.204 1.204 14 H -0.217 1.217 15 H -0.217 1.217 16 C -0.058 4.058 17 N -0.333 5.333 18 C 0.357 3.643 19 O -0.410 6.410 20 C -0.142 4.142 21 C -0.075 4.075 22 C -0.118 4.118 23 C -0.127 4.127 24 C 0.260 3.740 25 F -0.179 7.179 26 F -0.177 7.177 27 C -0.144 4.144 28 C 0.129 3.871 29 F -0.095 7.095 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.222 0.778 36 H 0.067 0.933 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.171 0.829 40 H 0.164 0.836 41 H 0.144 0.856 42 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -5.177 3.804 -15.235 16.534 hybrid contribution 0.794 -0.416 0.039 0.897 sum -4.383 3.389 -15.196 16.174 Atomic orbital electron populations 1.22130 0.94957 1.02259 1.02537 1.21567 0.94275 0.96334 0.84275 0.90687 1.23067 0.99179 0.99717 0.95682 1.21342 0.94808 0.89560 0.88305 0.91237 1.42325 1.09673 1.27736 1.55217 1.19301 0.86827 1.06949 1.25100 0.90871 1.24758 0.97641 0.98252 0.99603 1.69668 1.30811 1.22339 1.34723 0.86132 0.83821 0.78859 0.77439 1.20414 1.21708 1.21709 1.23767 0.94491 0.87320 1.00234 1.48506 1.51665 1.29020 1.04158 1.17594 0.80092 0.85045 0.81536 1.90799 1.42582 1.24222 1.83371 1.20211 1.04255 0.95047 0.94675 1.21515 0.95544 0.90994 0.99490 1.20982 0.98042 1.01111 0.91688 1.20329 1.02234 0.93870 0.96284 1.20442 0.73143 0.99664 0.80722 1.93033 1.75503 1.96183 1.53151 1.93045 1.34495 1.95772 1.94381 1.20848 1.01583 0.92714 0.99267 1.17479 0.98451 0.77812 0.93348 1.91588 1.93525 1.28701 1.95699 0.92416 0.91586 0.91778 0.90120 0.90244 0.77798 0.93314 0.90989 0.90981 0.82921 0.83621 0.85588 0.83627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.06 9.11 37.16 0.34 -1.72 16 2 C 0.14 1.95 3.43 -66.96 -0.23 1.72 16 3 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 4 C -0.14 -1.99 6.12 -24.90 -0.15 -2.15 16 5 C 0.17 3.01 3.73 -65.66 -0.24 2.76 16 6 H 0.07 1.26 8.09 -51.93 -0.42 0.84 16 7 N -0.71 -15.68 5.24 -51.23 -0.27 -15.95 16 8 C -0.25 -6.30 9.96 -15.06 -0.15 -6.45 16 9 H 0.07 1.80 7.83 -52.48 -0.41 1.39 16 10 C -0.01 -0.15 5.50 -17.43 -0.10 -0.25 16 11 N -0.93 -25.90 13.06 55.49 0.72 -25.17 16 12 Si 0.91 20.88 29.55 -169.99 -5.02 15.85 16 13 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 14 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 15 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 16 C 0.07 1.04 4.91 -2.40 -0.01 1.03 16 17 N -0.60 -8.99 3.06 -164.03 -0.50 -9.50 16 18 C 0.57 9.14 7.14 -12.40 -0.09 9.05 16 19 O -0.53 -9.98 15.38 5.31 0.08 -9.90 16 20 C -0.14 -1.90 5.42 -104.91 -0.57 -2.47 16 21 C -0.06 -0.64 8.17 -39.19 -0.32 -0.96 16 22 C -0.10 -0.91 9.65 -39.64 -0.38 -1.29 16 23 C -0.13 -1.21 5.38 -104.55 -0.56 -1.77 16 24 C 0.31 2.51 5.44 36.00 0.20 2.71 16 25 F -0.20 -1.88 17.25 2.25 0.04 -1.84 16 26 F -0.20 -1.97 17.25 2.25 0.04 -1.93 16 27 C -0.13 -1.39 9.55 -39.56 -0.38 -1.77 16 28 C 0.15 2.03 7.24 -38.96 -0.28 1.75 16 29 F -0.12 -1.80 16.15 2.25 0.04 -1.76 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.06 0.91 7.06 -51.92 -0.37 0.54 16 33 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.08 1.16 7.71 -51.93 -0.40 0.75 16 35 H 0.39 9.12 7.76 -40.82 -0.32 8.80 16 36 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 37 H 0.07 1.09 6.91 -51.93 -0.36 0.73 16 38 H 0.07 1.12 7.25 -51.93 -0.38 0.74 16 39 H 0.15 1.64 5.73 -52.48 -0.30 1.34 16 40 H 0.15 0.86 7.94 -52.48 -0.42 0.45 16 41 H 0.13 0.55 7.86 -51.93 -0.41 0.14 16 42 H 0.15 1.42 8.06 -52.48 -0.42 1.00 16 LS Contribution 362.12 15.07 5.46 5.46 Total: -1.00 -30.45 362.12 -7.37 -37.82 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -5.03 Total: 6.74 kcal Atomic # 6 Polarization: 3.11 SS G_CDS: -2.93 Total: 0.18 kcal Atomic # 7 Polarization: -50.57 SS G_CDS: -0.05 Total: -50.62 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: 0.08 Total: -9.90 kcal Atomic # 9 Polarization: -5.65 SS G_CDS: 0.11 Total: -5.53 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.45 -7.37 -37.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989604492.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.428 kcal (2) G-P(sol) polarization free energy of solvation -30.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds