Wall clock time and date at job start Wed Apr 1 2020 02:22:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.99623 * 2 1 4 4 C 1.54320 * 109.88005 * 121.08925 * 2 1 3 5 5 C 1.55157 * 102.94238 * 141.61274 * 4 2 1 6 6 H 1.09000 * 111.00374 * 82.56905 * 5 4 2 7 7 N 1.46503 * 111.00757 * 206.38927 * 5 4 2 8 8 C 1.36936 * 120.00155 * 205.00105 * 7 5 4 9 9 H 1.08007 * 119.99865 * 359.97438 * 8 7 5 10 10 C 1.38809 * 120.00277 * 179.97438 * 8 7 5 11 11 N 1.31625 * 119.99753 * 359.97438 * 10 8 7 12 12 Si 1.86796 * 120.00367 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.46862 * 0.02562 * 12 10 8 14 14 H 1.48494 * 109.47446 * 120.00105 * 12 10 8 15 15 H 1.48503 * 109.47192 * 240.00232 * 12 10 8 16 16 C 1.55131 * 101.48730 * 324.33349 * 5 4 2 17 17 N 1.47019 * 109.88447 * 238.90175 * 2 1 3 18 18 C 1.34771 * 125.65027 * 61.60340 * 17 2 1 19 19 O 1.21565 * 120.00032 * 5.33758 * 18 17 2 20 20 C 1.47698 * 120.00123 * 185.33828 * 18 17 2 21 21 C 1.39656 * 120.16762 * 36.35632 * 20 18 17 22 22 C 1.37854 * 119.88023 * 179.97438 * 21 20 18 23 23 C 1.38458 * 120.21977 * 359.97438 * 22 21 20 24 24 C 1.50697 * 119.83129 * 180.02562 * 23 22 21 25 25 F 1.39903 * 109.47329 * 119.97378 * 24 23 22 26 26 F 1.39908 * 109.46965 * 239.97035 * 24 23 22 27 27 C 1.38206 * 120.33402 * 359.97438 * 23 22 21 28 28 C 1.38315 * 120.12268 * 0.28407 * 27 23 22 29 29 F 1.35098 * 120.11454 * 179.74223 * 28 27 23 30 30 H 1.09006 * 109.46915 * 179.64520 * 1 2 3 31 31 H 1.08994 * 109.47500 * 299.64783 * 1 2 3 32 32 H 1.09009 * 109.46891 * 59.64759 * 1 2 3 33 33 H 1.09004 * 110.72388 * 259.97505 * 4 2 1 34 34 H 1.09004 * 110.72092 * 23.24965 * 4 2 1 35 35 H 0.97002 * 119.99898 * 24.99396 * 7 5 4 36 36 H 0.96998 * 119.99499 * 180.02562 * 11 10 8 37 37 H 1.08997 * 110.49759 * 278.45834 * 16 5 4 38 38 H 1.09003 * 110.34766 * 156.05722 * 16 5 4 39 39 H 1.08007 * 120.06089 * 359.97438 * 21 20 18 40 40 H 1.08006 * 119.89433 * 180.02562 * 22 21 20 41 41 H 1.08996 * 109.47321 * 359.97339 * 24 23 22 42 42 H 1.08005 * 119.93483 * 180.02562 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0548 -0.7494 1.2428 5 6 3.2876 -1.5141 0.6926 6 1 4.1654 -0.8687 0.6605 7 7 3.5537 -2.7190 1.4824 8 6 4.8171 -3.2456 1.5236 9 1 5.6173 -2.7729 0.9734 10 6 5.0693 -4.3868 2.2724 11 7 4.0942 -4.9626 2.9433 12 14 6.7926 -5.1056 2.3280 13 1 7.7013 -4.2774 1.4951 14 1 7.2796 -5.1160 3.7307 15 1 6.7669 -6.4943 1.8026 16 6 2.8100 -1.8826 -0.7366 17 7 2.0301 -0.7141 -1.1838 18 6 1.8075 -0.3622 -2.4656 19 8 1.2251 0.6744 -2.7190 20 6 2.2710 -1.2360 -3.5625 21 6 2.2276 -2.6245 -3.4197 22 6 2.6612 -3.4345 -4.4475 23 6 3.1390 -2.8759 -5.6208 24 6 3.6103 -3.7695 -6.7390 25 9 2.8440 -3.5274 -7.8841 26 9 4.9560 -3.5028 -7.0135 27 6 3.1850 -1.5029 -5.7721 28 6 2.7584 -0.6770 -4.7479 29 9 2.8083 0.6651 -4.8940 30 1 -0.3633 -1.0277 -0.0064 31 1 -0.3634 0.5083 0.8931 32 1 -0.3633 0.5193 -0.8869 33 1 2.3528 -0.0458 2.0201 34 1 1.3050 -1.4458 1.6184 35 1 2.8349 -3.1437 1.9764 36 1 4.2706 -5.7599 3.4668 37 1 2.1802 -2.7718 -0.7112 38 1 3.6657 -2.0413 -1.3930 39 1 1.8549 -3.0630 -2.5057 40 1 2.6274 -4.5084 -4.3375 41 1 3.4999 -4.8124 -6.4418 42 1 3.5585 -1.0741 -6.6903 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989604492.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:22:54 Heat of formation + Delta-G solvation = -153.313417 kcal Electronic energy + Delta-G solvation = -29944.749883 eV Core-core repulsion = 25281.613967 eV Total energy + Delta-G solvation = -4663.135915 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.130 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -50.15080 -50.00179 -47.99818 -41.63243 -39.92786 -38.72650 -36.00693 -34.09318 -33.22043 -32.27432 -31.86777 -30.09389 -27.92056 -26.78420 -25.81678 -24.38653 -23.95714 -22.64392 -21.83403 -20.48846 -19.28612 -19.06935 -18.61080 -18.41555 -18.21687 -17.65864 -17.24556 -16.93630 -16.87141 -16.77859 -16.14348 -15.58905 -15.35846 -15.27133 -15.04768 -14.93826 -14.79952 -14.45103 -14.37105 -14.22185 -14.00661 -13.81514 -13.54532 -13.45254 -13.39553 -13.06796 -12.89037 -12.83334 -12.66496 -12.35137 -12.13035 -12.04301 -12.02937 -11.74559 -11.49514 -11.19189 -10.94306 -10.44677 -10.05027 -9.75892 -9.03251 -7.92875 -5.22363 -0.64868 -0.07870 1.43257 1.51488 1.54374 1.62036 1.75465 2.29069 2.51462 2.58552 2.93112 3.13689 3.26010 3.36764 3.38922 3.71370 3.81395 3.82142 3.88393 3.95774 4.01690 4.06919 4.14567 4.23695 4.36179 4.45054 4.49507 4.57993 4.70852 4.73358 4.78389 4.85098 4.90313 4.99079 5.04116 5.11715 5.20542 5.35024 5.36807 5.48331 5.57456 6.28148 6.35059 6.90503 7.37248 8.06689 8.32214 9.29719 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.008701 B = 0.003778 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3217.320470 B = 7410.446458 C = 9930.161941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.136 3.864 3 H 0.073 0.927 4 C -0.124 4.124 5 C 0.165 3.835 6 H 0.061 0.939 7 N -0.718 5.718 8 C -0.242 4.242 9 H 0.076 0.924 10 C -0.062 4.062 11 N -0.963 5.963 12 Si 0.963 3.037 13 H -0.269 1.269 14 H -0.298 1.298 15 H -0.292 1.292 16 C 0.083 3.917 17 N -0.598 5.598 18 C 0.567 3.433 19 O -0.567 6.567 20 C -0.158 4.158 21 C -0.060 4.060 22 C -0.082 4.082 23 C -0.122 4.122 24 C 0.313 3.687 25 F -0.207 7.207 26 F -0.208 7.208 27 C -0.127 4.127 28 C 0.124 3.876 29 F -0.137 7.137 30 H 0.060 0.940 31 H 0.086 0.914 32 H 0.047 0.953 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.379 0.621 36 H 0.251 0.749 37 H 0.079 0.921 38 H 0.072 0.928 39 H 0.159 0.841 40 H 0.188 0.812 41 H 0.175 0.825 42 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.811 1.828 -15.910 16.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.033 3.967 3 H 0.091 0.909 4 C -0.162 4.162 5 C 0.054 3.946 6 H 0.080 0.920 7 N -0.357 5.357 8 C -0.374 4.374 9 H 0.094 0.906 10 C -0.255 4.255 11 N -0.613 5.613 12 Si 0.793 3.207 13 H -0.193 1.193 14 H -0.226 1.226 15 H -0.219 1.219 16 C -0.042 4.042 17 N -0.330 5.330 18 C 0.356 3.644 19 O -0.447 6.447 20 C -0.162 4.162 21 C -0.078 4.078 22 C -0.100 4.100 23 C -0.123 4.123 24 C 0.260 3.740 25 F -0.188 7.188 26 F -0.190 7.190 27 C -0.145 4.145 28 C 0.104 3.896 29 F -0.115 7.115 30 H 0.079 0.921 31 H 0.105 0.895 32 H 0.066 0.934 33 H 0.109 0.891 34 H 0.101 0.899 35 H 0.213 0.787 36 H 0.060 0.940 37 H 0.097 0.903 38 H 0.091 0.909 39 H 0.176 0.824 40 H 0.206 0.794 41 H 0.192 0.808 42 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -4.906 2.445 -16.151 17.056 hybrid contribution 0.698 0.079 0.256 0.748 sum -4.208 2.523 -15.895 16.635 Atomic orbital electron populations 1.22054 0.93715 1.02479 1.02771 1.21648 0.95261 0.96055 0.83694 0.90919 1.22957 0.97743 0.99545 0.95984 1.21471 0.95870 0.88171 0.89116 0.92044 1.42380 1.08512 1.28877 1.55962 1.19606 0.87987 1.06278 1.23527 0.90574 1.25398 1.00519 0.99237 1.00331 1.69791 1.32400 1.22871 1.36214 0.85230 0.80565 0.78036 0.76834 1.19301 1.22596 1.21948 1.23448 0.94654 0.87522 0.98556 1.48507 1.51359 1.28826 1.04308 1.17974 0.79459 0.84875 0.82085 1.90770 1.44250 1.25858 1.83858 1.20172 1.05966 0.95942 0.94161 1.21647 0.95671 0.89964 1.00533 1.21412 0.95488 1.02913 0.90204 1.20659 1.01109 0.93377 0.97181 1.20900 0.72098 1.01389 0.79588 1.93019 1.75730 1.96373 1.53713 1.93024 1.35554 1.95993 1.94401 1.21033 1.01100 0.93515 0.98880 1.17757 1.00236 0.77344 0.94311 1.91529 1.93918 1.30182 1.95864 0.92134 0.89482 0.93399 0.89068 0.89868 0.78738 0.93959 0.90308 0.90945 0.82402 0.79447 0.80787 0.82825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.73 9.11 71.98 0.66 -3.08 16 2 C 0.14 3.71 3.43 45.34 0.16 3.87 16 3 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 4 C -0.12 -3.42 6.12 31.78 0.19 -3.23 16 5 C 0.16 5.57 3.73 46.46 0.17 5.75 16 6 H 0.06 2.19 8.09 -2.39 -0.02 2.17 16 7 N -0.72 -31.15 5.24 -316.00 -1.66 -32.80 16 8 C -0.24 -11.95 9.96 84.03 0.84 -11.11 16 9 H 0.08 3.65 7.83 -2.91 -0.02 3.62 16 10 C -0.06 -3.21 5.50 84.86 0.47 -2.74 16 11 N -0.96 -53.74 13.06 21.65 0.28 -53.46 16 12 Si 0.96 42.48 29.55 68.60 2.03 44.51 16 13 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 14 H -0.30 -13.45 7.11 99.48 0.71 -12.74 16 15 H -0.29 -12.88 7.11 99.48 0.71 -12.18 16 16 C 0.08 2.47 4.91 86.93 0.43 2.89 16 17 N -0.60 -17.58 3.06 -791.15 -2.42 -20.01 16 18 C 0.57 18.31 7.14 86.74 0.62 18.93 16 19 O -0.57 -21.85 15.38 -3.92 -0.06 -21.91 16 20 C -0.16 -4.32 5.42 -20.05 -0.11 -4.43 16 21 C -0.06 -1.23 8.17 22.52 0.18 -1.04 16 22 C -0.08 -1.20 9.65 22.23 0.21 -0.98 16 23 C -0.12 -2.00 5.38 -19.82 -0.11 -2.11 16 24 C 0.31 3.90 5.44 71.24 0.39 4.29 16 25 F -0.21 -3.40 17.25 44.97 0.78 -2.62 16 26 F -0.21 -3.64 17.25 44.97 0.78 -2.87 16 27 C -0.13 -2.69 9.55 22.28 0.21 -2.48 16 28 C 0.12 3.38 7.24 22.67 0.16 3.54 16 29 F -0.14 -4.38 16.15 44.97 0.73 -3.65 16 30 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 31 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.05 1.35 7.06 -2.38 -0.02 1.33 16 33 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 34 H 0.08 2.28 7.71 -2.38 -0.02 2.27 16 35 H 0.38 17.68 7.76 -92.71 -0.72 16.96 16 36 H 0.25 13.74 8.31 -92.71 -0.77 12.97 16 37 H 0.08 2.26 6.91 -2.39 -0.02 2.24 16 38 H 0.07 2.15 7.25 -2.39 -0.02 2.13 16 39 H 0.16 3.04 5.73 -2.91 -0.02 3.02 16 40 H 0.19 1.16 7.94 -2.91 -0.02 1.13 16 41 H 0.18 0.57 7.86 -2.39 -0.02 0.55 16 42 H 0.15 2.90 8.06 -2.91 -0.02 2.88 16 Total: -1.00 -66.67 362.12 5.28 -61.38 By element: Atomic # 1 Polarization: 23.00 SS G_CDS: 0.36 Total: 23.36 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: 4.48 Total: 8.07 kcal Atomic # 7 Polarization: -102.47 SS G_CDS: -3.80 Total: -106.27 kcal Atomic # 8 Polarization: -21.85 SS G_CDS: -0.06 Total: -21.91 kcal Atomic # 9 Polarization: -11.42 SS G_CDS: 2.28 Total: -9.14 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.51 kcal Total: -66.67 5.28 -61.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989604492.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.930 kcal (2) G-P(sol) polarization free energy of solvation -66.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds