Wall clock time and date at job start Wed Apr 1 2020 02:19:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 110.32624 * 2 1 4 4 C 1.54909 * 110.45985 * 237.70158 * 2 1 3 5 5 C 1.55150 * 101.58185 * 204.10805 * 4 2 1 6 6 H 1.09002 * 110.72072 * 277.13603 * 5 4 2 7 7 N 1.46501 * 110.72289 * 154.04138 * 5 4 2 8 8 C 1.36942 * 120.00334 * 154.99454 * 7 5 4 9 9 H 1.08004 * 119.99484 * 0.02562 * 8 7 5 10 10 C 1.38807 * 120.00084 * 180.02562 * 8 7 5 11 11 N 1.31611 * 120.00295 * 359.97438 * 10 8 7 12 12 Si 1.86807 * 119.99712 * 180.02562 * 10 8 7 13 13 H 1.48490 * 109.47017 * 90.00138 * 12 10 8 14 14 H 1.48503 * 109.46448 * 210.00090 * 12 10 8 15 15 H 1.48501 * 109.47193 * 329.99635 * 12 10 8 16 16 C 1.54328 * 103.02259 * 35.30567 * 5 4 2 17 17 N 1.47019 * 107.26459 * 338.13949 * 16 5 4 18 18 C 1.34783 * 125.65010 * 178.84709 * 17 16 5 19 19 O 1.21545 * 120.00207 * 185.40579 * 18 17 16 20 20 C 1.47846 * 119.99611 * 5.40735 * 18 17 16 21 21 C 1.39576 * 120.14855 * 353.01117 * 20 18 17 22 22 C 1.37954 * 119.85637 * 179.72312 * 21 20 18 23 23 C 1.38360 * 120.14235 * 0.27811 * 22 21 20 24 24 C 1.50700 * 119.85306 * 179.97438 * 23 22 21 25 25 F 1.39907 * 109.46900 * 89.99704 * 24 23 22 26 26 F 1.39895 * 109.47480 * 209.99838 * 24 23 22 27 27 F 1.39901 * 109.47018 * 329.99954 * 24 23 22 28 28 C 1.38355 * 120.29298 * 359.97438 * 23 22 21 29 29 C 1.37956 * 120.14778 * 359.97438 * 28 23 22 30 30 H 1.09001 * 109.47493 * 299.22136 * 1 2 3 31 31 H 1.09002 * 109.47270 * 59.21644 * 1 2 3 32 32 H 1.08996 * 109.47629 * 179.21673 * 1 2 3 33 33 H 1.09004 * 111.00147 * 322.18078 * 4 2 1 34 34 H 1.09004 * 111.00794 * 85.99199 * 4 2 1 35 35 H 0.96998 * 119.99899 * 335.00032 * 7 5 4 36 36 H 0.97000 * 120.00580 * 180.02562 * 11 10 8 37 37 H 1.09004 * 109.99129 * 218.67062 * 16 5 4 38 38 H 1.09000 * 109.78216 * 97.49784 * 16 5 4 39 39 H 1.08003 * 120.07035 * 359.97438 * 21 20 18 40 40 H 1.07996 * 119.92710 * 180.30154 * 22 21 20 41 41 H 1.08005 * 119.92308 * 180.02562 * 28 23 22 42 42 H 1.08004 * 120.07373 * 180.02562 * 29 28 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9086 1.0221 0.0000 4 6 2.0715 -0.7755 -1.2268 5 6 3.4802 -1.1971 -0.7319 6 1 4.1959 -0.3865 -0.8695 7 7 3.9317 -2.4074 -1.4228 8 6 5.2707 -2.6673 -1.5446 9 1 5.9939 -1.9800 -1.1309 10 6 5.6984 -3.8138 -2.1998 11 7 4.8171 -4.6515 -2.7036 12 14 7.5250 -4.1685 -2.3653 13 1 7.9824 -4.9645 -1.1981 14 1 7.7692 -4.9350 -3.6135 15 1 8.2754 -2.8880 -2.4159 16 6 3.2539 -1.4696 0.7702 17 7 2.0431 -0.7372 1.1690 18 6 1.4959 -0.7355 2.4008 19 8 0.4368 -0.1716 2.5945 20 6 2.1843 -1.4194 3.5162 21 6 3.3222 -2.1895 3.2710 22 6 3.9631 -2.8204 4.3171 23 6 3.4767 -2.6958 5.6064 24 6 4.1816 -3.3883 6.7443 25 9 5.1544 -2.5361 7.2779 26 9 3.2529 -3.7159 7.7379 27 9 4.7920 -4.5557 6.2733 28 6 2.3461 -1.9382 5.8557 29 6 1.6964 -1.3013 4.8187 30 1 -0.3634 0.5017 0.8969 31 1 -0.3634 0.5260 -0.8829 32 1 -0.3634 -1.0275 -0.0140 33 1 1.4549 -1.6487 -1.4403 34 1 2.1414 -0.1264 -2.0997 35 1 3.2821 -3.0248 -1.7942 36 1 5.1160 -5.4529 -3.1611 37 1 4.1084 -1.1145 1.3463 38 1 3.1118 -2.5378 0.9340 39 1 3.7026 -2.2879 2.2650 40 1 4.8465 -3.4126 4.1294 41 1 1.9719 -1.8447 6.8645 42 1 0.8142 -0.7099 5.0146 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989708955.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:19:35 Heat of formation + Delta-G solvation = -118.882684 kcal Electronic energy + Delta-G solvation = -29915.115458 eV Core-core repulsion = 25253.472571 eV Total energy + Delta-G solvation = -4661.642887 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.130 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -50.36124 -47.87558 -47.82029 -40.72027 -38.93579 -37.42970 -34.31581 -33.18154 -31.65421 -31.52193 -30.73256 -28.57970 -26.73119 -25.82102 -24.13027 -23.27292 -22.84095 -21.48411 -20.51751 -19.53936 -18.68875 -18.55545 -18.50930 -17.44243 -17.10279 -16.50560 -15.64267 -15.13567 -14.87854 -14.71517 -14.68470 -14.51128 -14.45106 -14.27396 -14.07755 -13.97525 -13.87981 -13.80806 -13.60754 -13.33071 -13.09679 -12.87053 -12.79701 -12.30534 -12.02029 -11.92329 -11.77752 -11.53439 -11.29344 -11.00963 -10.78039 -10.54787 -10.40627 -10.15949 -9.85555 -9.62354 -9.46135 -9.32117 -9.07662 -8.50135 -7.21304 -5.94906 -3.27089 0.32235 1.03964 2.42928 2.61172 2.98085 3.33263 3.39402 3.40996 3.48405 3.53312 3.80692 4.20810 4.34626 4.46447 4.56838 4.61313 4.92241 4.98968 5.03444 5.11583 5.14353 5.35786 5.37008 5.46292 5.50350 5.65271 5.73251 5.77184 5.83624 5.89502 5.94991 5.99412 6.03954 6.06910 6.29521 6.35072 6.37454 6.44721 6.59025 6.71626 7.53152 7.60314 8.16890 8.22177 9.34385 9.86554 10.21231 11.26616 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.008415 B = 0.003790 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3326.563424 B = 7386.601377 C =10288.929456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.136 3.864 3 H 0.076 0.924 4 C -0.138 4.138 5 C 0.171 3.829 6 H 0.071 0.929 7 N -0.711 5.711 8 C -0.256 4.256 9 H 0.074 0.926 10 C -0.004 4.004 11 N -0.927 5.927 12 Si 0.907 3.093 13 H -0.288 1.288 14 H -0.290 1.290 15 H -0.280 1.280 16 C 0.056 3.944 17 N -0.599 5.599 18 C 0.569 3.431 19 O -0.540 6.540 20 C -0.096 4.096 21 C -0.122 4.122 22 C -0.076 4.076 23 C -0.167 4.167 24 C 0.508 3.492 25 F -0.176 7.176 26 F -0.178 7.178 27 F -0.174 7.174 28 C -0.084 4.084 29 C -0.066 4.066 30 H 0.084 0.916 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.388 0.612 36 H 0.258 0.742 37 H 0.072 0.928 38 H 0.086 0.914 39 H 0.183 0.817 40 H 0.143 0.857 41 H 0.140 0.860 42 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.947 6.643 14.954 17.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.034 3.966 3 H 0.093 0.907 4 C -0.177 4.177 5 C 0.058 3.942 6 H 0.089 0.911 7 N -0.351 5.351 8 C -0.386 4.386 9 H 0.092 0.908 10 C -0.201 4.201 11 N -0.574 5.574 12 Si 0.738 3.262 13 H -0.215 1.215 14 H -0.217 1.217 15 H -0.206 1.206 16 C -0.069 4.069 17 N -0.332 5.332 18 C 0.358 3.642 19 O -0.420 6.420 20 C -0.099 4.099 21 C -0.140 4.140 22 C -0.094 4.094 23 C -0.169 4.169 24 C 0.453 3.547 25 F -0.158 7.158 26 F -0.159 7.159 27 F -0.156 7.156 28 C -0.103 4.103 29 C -0.085 4.085 30 H 0.103 0.897 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.096 0.904 34 H 0.101 0.899 35 H 0.222 0.778 36 H 0.068 0.932 37 H 0.090 0.910 38 H 0.103 0.897 39 H 0.199 0.801 40 H 0.161 0.839 41 H 0.157 0.843 42 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -5.306 6.888 15.086 17.413 hybrid contribution 1.071 -0.796 0.112 1.339 sum -4.235 6.093 15.198 16.912 Atomic orbital electron populations 1.22191 0.94016 1.02696 1.03138 1.21939 0.95034 0.95305 0.84352 0.90651 1.23198 0.97771 1.00443 0.96270 1.21221 0.93448 0.91359 0.88157 0.91131 1.42395 1.05344 1.22402 1.64945 1.19252 0.83211 1.04874 1.31305 0.90830 1.24772 0.97744 0.97278 1.00337 1.69650 1.32463 1.13443 1.41798 0.86204 0.84730 0.77983 0.77323 1.21489 1.21659 1.20581 1.23850 0.85494 0.96626 1.00924 1.48489 1.28182 1.47867 1.08658 1.17858 0.84459 0.80384 0.81504 1.90691 1.21750 1.46379 1.83174 1.20242 0.96423 0.99034 0.94236 1.23173 0.93910 0.94021 1.02848 1.21050 0.99868 0.97895 0.90555 1.20223 0.99396 1.03681 0.93559 1.18332 0.77059 0.77034 0.82229 1.93232 1.64463 1.70533 1.87534 1.93186 1.65740 1.92932 1.64044 1.93215 1.84003 1.50096 1.88239 1.20864 0.93620 0.95448 1.00328 1.21227 0.99263 0.97427 0.90573 0.89738 0.92295 0.92683 0.90395 0.89922 0.77764 0.93202 0.91048 0.89664 0.80091 0.83928 0.84254 0.83659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.14 8.64 37.16 0.32 -1.82 16 2 C 0.14 1.84 3.78 -66.42 -0.25 1.59 16 3 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 4 C -0.14 -1.98 6.13 -24.59 -0.15 -2.13 16 5 C 0.17 2.87 3.60 -66.10 -0.24 2.64 16 6 H 0.07 1.18 8.09 -51.93 -0.42 0.76 16 7 N -0.71 -15.59 5.16 -51.65 -0.27 -15.86 16 8 C -0.26 -6.33 9.96 -15.06 -0.15 -6.48 16 9 H 0.07 1.75 7.83 -52.48 -0.41 1.34 16 10 C 0.00 -0.11 5.50 -17.44 -0.10 -0.20 16 11 N -0.93 -26.00 13.06 55.49 0.72 -25.28 16 12 Si 0.91 20.79 29.55 -169.99 -5.02 15.77 16 13 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 14 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 15 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 16 C 0.06 0.85 4.63 -3.06 -0.01 0.83 16 17 N -0.60 -8.68 3.24 -168.21 -0.55 -9.23 16 18 C 0.57 8.57 7.64 -12.33 -0.09 8.47 16 19 O -0.54 -9.07 13.89 5.33 0.07 -8.99 16 20 C -0.10 -1.28 5.87 -104.97 -0.62 -1.90 16 21 C -0.12 -1.55 8.61 -39.19 -0.34 -1.89 16 22 C -0.08 -0.89 9.38 -39.64 -0.37 -1.26 16 23 C -0.17 -1.87 5.46 -104.53 -0.57 -2.44 16 24 C 0.51 5.54 3.36 36.01 0.12 5.66 16 25 F -0.18 -1.98 17.30 2.25 0.04 -1.94 16 26 F -0.18 -1.90 16.45 2.25 0.04 -1.86 16 27 F -0.17 -2.03 16.45 2.25 0.04 -1.99 16 28 C -0.08 -0.87 9.38 -39.64 -0.37 -1.25 16 29 C -0.07 -0.76 9.59 -39.18 -0.38 -1.14 16 30 H 0.08 1.23 5.88 -51.93 -0.31 0.93 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.08 1.19 7.93 -51.93 -0.41 0.78 16 34 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.39 9.22 7.76 -40.82 -0.32 8.91 16 36 H 0.26 7.07 8.31 -40.82 -0.34 6.74 16 37 H 0.07 0.99 6.76 -51.93 -0.35 0.64 16 38 H 0.09 1.38 6.61 -51.93 -0.34 1.04 16 39 H 0.18 2.38 2.75 -57.77 -0.16 2.22 16 40 H 0.14 1.51 7.59 -52.49 -0.40 1.11 16 41 H 0.14 1.12 7.59 -52.48 -0.40 0.72 16 42 H 0.15 1.55 7.67 -52.48 -0.40 1.15 16 LS Contribution 355.31 15.07 5.35 5.35 Total: -1.00 -28.17 355.31 -7.51 -35.68 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: -4.74 Total: 9.67 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: -3.20 Total: -1.31 kcal Atomic # 7 Polarization: -50.28 SS G_CDS: -0.09 Total: -50.37 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: 0.07 Total: -8.99 kcal Atomic # 9 Polarization: -5.91 SS G_CDS: 0.11 Total: -5.80 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -28.17 -7.51 -35.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989708955.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.205 kcal (2) G-P(sol) polarization free energy of solvation -28.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds