Wall clock time and date at job start Wed Apr 1 2020 02:19:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 110.32624 * 2 1 4 4 C 1.54909 * 110.45985 * 237.70158 * 2 1 3 5 5 C 1.55150 * 101.58185 * 204.10805 * 4 2 1 6 6 H 1.09002 * 110.72072 * 277.13603 * 5 4 2 7 7 N 1.46501 * 110.72289 * 154.04138 * 5 4 2 8 8 C 1.36942 * 120.00334 * 154.99454 * 7 5 4 9 9 H 1.08004 * 119.99484 * 0.02562 * 8 7 5 10 10 C 1.38807 * 120.00084 * 180.02562 * 8 7 5 11 11 N 1.31611 * 120.00295 * 359.97438 * 10 8 7 12 12 Si 1.86807 * 119.99712 * 180.02562 * 10 8 7 13 13 H 1.48490 * 109.47017 * 90.00138 * 12 10 8 14 14 H 1.48503 * 109.46448 * 210.00090 * 12 10 8 15 15 H 1.48501 * 109.47193 * 329.99635 * 12 10 8 16 16 C 1.54328 * 103.02259 * 35.30567 * 5 4 2 17 17 N 1.47019 * 107.26459 * 338.13949 * 16 5 4 18 18 C 1.34783 * 125.65010 * 178.84709 * 17 16 5 19 19 O 1.21545 * 120.00207 * 185.40579 * 18 17 16 20 20 C 1.47846 * 119.99611 * 5.40735 * 18 17 16 21 21 C 1.39576 * 120.14855 * 353.01117 * 20 18 17 22 22 C 1.37954 * 119.85637 * 179.72312 * 21 20 18 23 23 C 1.38360 * 120.14235 * 0.27811 * 22 21 20 24 24 C 1.50700 * 119.85306 * 179.97438 * 23 22 21 25 25 F 1.39907 * 109.46900 * 89.99704 * 24 23 22 26 26 F 1.39895 * 109.47480 * 209.99838 * 24 23 22 27 27 F 1.39901 * 109.47018 * 329.99954 * 24 23 22 28 28 C 1.38355 * 120.29298 * 359.97438 * 23 22 21 29 29 C 1.37956 * 120.14778 * 359.97438 * 28 23 22 30 30 H 1.09001 * 109.47493 * 299.22136 * 1 2 3 31 31 H 1.09002 * 109.47270 * 59.21644 * 1 2 3 32 32 H 1.08996 * 109.47629 * 179.21673 * 1 2 3 33 33 H 1.09004 * 111.00147 * 322.18078 * 4 2 1 34 34 H 1.09004 * 111.00794 * 85.99199 * 4 2 1 35 35 H 0.96998 * 119.99899 * 335.00032 * 7 5 4 36 36 H 0.97000 * 120.00580 * 180.02562 * 11 10 8 37 37 H 1.09004 * 109.99129 * 218.67062 * 16 5 4 38 38 H 1.09000 * 109.78216 * 97.49784 * 16 5 4 39 39 H 1.08003 * 120.07035 * 359.97438 * 21 20 18 40 40 H 1.07996 * 119.92710 * 180.30154 * 22 21 20 41 41 H 1.08005 * 119.92308 * 180.02562 * 28 23 22 42 42 H 1.08004 * 120.07373 * 180.02562 * 29 28 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9086 1.0221 0.0000 4 6 2.0715 -0.7755 -1.2268 5 6 3.4802 -1.1971 -0.7319 6 1 4.1959 -0.3865 -0.8695 7 7 3.9317 -2.4074 -1.4228 8 6 5.2707 -2.6673 -1.5446 9 1 5.9939 -1.9800 -1.1309 10 6 5.6984 -3.8138 -2.1998 11 7 4.8171 -4.6515 -2.7036 12 14 7.5250 -4.1685 -2.3653 13 1 7.9824 -4.9645 -1.1981 14 1 7.7692 -4.9350 -3.6135 15 1 8.2754 -2.8880 -2.4159 16 6 3.2539 -1.4696 0.7702 17 7 2.0431 -0.7372 1.1690 18 6 1.4959 -0.7355 2.4008 19 8 0.4368 -0.1716 2.5945 20 6 2.1843 -1.4194 3.5162 21 6 3.3222 -2.1895 3.2710 22 6 3.9631 -2.8204 4.3171 23 6 3.4767 -2.6958 5.6064 24 6 4.1816 -3.3883 6.7443 25 9 5.1544 -2.5361 7.2779 26 9 3.2529 -3.7159 7.7379 27 9 4.7920 -4.5557 6.2733 28 6 2.3461 -1.9382 5.8557 29 6 1.6964 -1.3013 4.8187 30 1 -0.3634 0.5017 0.8969 31 1 -0.3634 0.5260 -0.8829 32 1 -0.3634 -1.0275 -0.0140 33 1 1.4549 -1.6487 -1.4403 34 1 2.1414 -0.1264 -2.0997 35 1 3.2821 -3.0248 -1.7942 36 1 5.1160 -5.4529 -3.1611 37 1 4.1084 -1.1145 1.3463 38 1 3.1118 -2.5378 0.9340 39 1 3.7026 -2.2879 2.2650 40 1 4.8465 -3.4126 4.1294 41 1 1.9719 -1.8447 6.8645 42 1 0.8142 -0.7099 5.0146 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989708955.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:19:34 Heat of formation + Delta-G solvation = -133.482767 kcal Electronic energy + Delta-G solvation = -29915.748565 eV Core-core repulsion = 25253.472571 eV Total energy + Delta-G solvation = -4662.275994 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.130 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -51.23946 -48.75157 -48.70205 -41.83659 -39.95856 -38.68739 -35.97633 -34.23172 -33.23748 -32.57737 -31.75670 -30.12827 -27.72514 -26.94552 -25.84553 -24.31973 -23.88806 -22.57061 -21.84913 -20.64641 -19.56459 -19.45916 -19.42923 -19.20338 -18.19458 -17.73352 -16.92651 -16.43743 -15.95429 -15.81383 -15.74890 -15.59489 -15.42226 -15.35834 -15.17586 -15.13295 -14.95976 -14.85421 -14.78769 -14.45719 -14.29878 -14.07301 -13.84945 -13.48291 -13.29880 -13.11937 -12.90033 -12.83457 -12.73549 -12.49572 -12.21298 -12.09368 -11.79445 -11.69951 -11.52318 -10.98307 -10.69114 -10.43403 -10.22986 -9.68540 -9.04524 -7.92701 -5.22719 -0.64336 0.13425 1.52626 1.53676 1.54292 1.54967 1.61134 1.84749 2.51615 2.58382 2.60408 2.92865 3.24973 3.33321 3.38288 3.65547 3.73144 3.81832 3.83556 3.87316 4.09491 4.18174 4.20429 4.28264 4.43586 4.50854 4.53897 4.67773 4.72893 4.79988 4.84737 4.92725 5.00048 5.05111 5.13336 5.15272 5.27422 5.33271 5.50197 5.56807 5.58040 6.27622 6.41579 7.00464 7.36299 8.07274 8.30572 9.30064 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.008415 B = 0.003790 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3326.563424 B = 7386.601377 C =10288.929456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.136 3.864 3 H 0.093 0.907 4 C -0.127 4.127 5 C 0.164 3.836 6 H 0.078 0.922 7 N -0.723 5.723 8 C -0.242 4.242 9 H 0.084 0.916 10 C -0.066 4.066 11 N -0.967 5.967 12 Si 0.965 3.035 13 H -0.288 1.288 14 H -0.302 1.302 15 H -0.267 1.267 16 C 0.071 3.929 17 N -0.600 5.600 18 C 0.566 3.434 19 O -0.561 6.561 20 C -0.112 4.112 21 C -0.127 4.127 22 C -0.080 4.080 23 C -0.167 4.167 24 C 0.513 3.487 25 F -0.177 7.177 26 F -0.174 7.174 27 F -0.179 7.179 28 C -0.075 4.075 29 C -0.065 4.065 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.040 0.960 33 H 0.065 0.935 34 H 0.098 0.902 35 H 0.376 0.624 36 H 0.250 0.750 37 H 0.085 0.915 38 H 0.072 0.928 39 H 0.174 0.826 40 H 0.151 0.849 41 H 0.167 0.833 42 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.642 7.923 16.342 18.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.034 3.966 3 H 0.111 0.889 4 C -0.166 4.166 5 C 0.053 3.947 6 H 0.096 0.904 7 N -0.362 5.362 8 C -0.373 4.373 9 H 0.102 0.898 10 C -0.259 4.259 11 N -0.617 5.617 12 Si 0.794 3.206 13 H -0.216 1.216 14 H -0.229 1.229 15 H -0.192 1.192 16 C -0.054 4.054 17 N -0.332 5.332 18 C 0.356 3.644 19 O -0.442 6.442 20 C -0.115 4.115 21 C -0.144 4.144 22 C -0.098 4.098 23 C -0.169 4.169 24 C 0.459 3.541 25 F -0.158 7.158 26 F -0.156 7.156 27 F -0.160 7.160 28 C -0.092 4.092 29 C -0.084 4.084 30 H 0.090 0.910 31 H 0.100 0.900 32 H 0.059 0.941 33 H 0.084 0.916 34 H 0.117 0.883 35 H 0.208 0.792 36 H 0.059 0.941 37 H 0.103 0.897 38 H 0.090 0.910 39 H 0.191 0.809 40 H 0.169 0.831 41 H 0.184 0.816 42 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -4.998 8.224 16.507 19.108 hybrid contribution 0.915 -1.118 -0.233 1.464 sum -4.083 7.106 16.275 18.221 Atomic orbital electron populations 1.22101 0.93591 1.01934 1.03599 1.22050 0.95353 0.95802 0.83410 0.88946 1.23102 0.95854 1.00367 0.97288 1.21427 0.94893 0.89560 0.88808 0.90450 1.42520 1.04254 1.23725 1.65658 1.19656 0.84666 1.04112 1.28900 0.89766 1.25459 1.01059 0.97874 1.01520 1.69796 1.33967 1.14022 1.43885 0.85274 0.80941 0.77920 0.76417 1.21561 1.22921 1.19222 1.23520 0.86306 0.96041 0.99518 1.48510 1.27940 1.47797 1.08993 1.18136 0.84252 0.80126 0.81856 1.90680 1.22574 1.47397 1.83519 1.20228 0.96954 0.99871 0.94434 1.23023 0.94091 0.94555 1.02758 1.21152 1.00152 0.97858 0.90648 1.20325 0.99593 1.03591 0.93395 1.18226 0.76964 0.76786 0.82130 1.93234 1.64531 1.70542 1.87528 1.93195 1.65583 1.92896 1.63878 1.93209 1.84106 1.50390 1.88320 1.21131 0.92774 0.94086 1.01256 1.21366 0.99493 0.97422 0.90105 0.90967 0.90037 0.94062 0.91580 0.88346 0.79187 0.94105 0.89674 0.91042 0.80901 0.83114 0.81595 0.82819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.87 8.64 71.98 0.62 -3.25 16 2 C 0.14 3.46 3.78 45.47 0.17 3.64 16 3 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 4 C -0.13 -3.50 6.13 31.98 0.20 -3.30 16 5 C 0.16 5.33 3.60 46.18 0.17 5.50 16 6 H 0.08 2.44 8.09 -2.39 -0.02 2.42 16 7 N -0.72 -31.58 5.16 -317.33 -1.64 -33.22 16 8 C -0.24 -11.84 9.96 84.03 0.84 -11.01 16 9 H 0.08 3.88 7.83 -2.91 -0.02 3.85 16 10 C -0.07 -3.49 5.50 84.86 0.47 -3.02 16 11 N -0.97 -55.34 13.06 21.65 0.28 -55.06 16 12 Si 0.96 42.83 29.55 68.60 2.03 44.86 16 13 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 14 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 15 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 16 C 0.07 2.08 4.63 86.73 0.40 2.48 16 17 N -0.60 -16.80 3.24 -804.36 -2.61 -19.40 16 18 C 0.57 16.58 7.64 86.79 0.66 17.24 16 19 O -0.56 -18.38 13.89 -3.86 -0.05 -18.44 16 20 C -0.11 -2.86 5.87 -20.09 -0.12 -2.97 16 21 C -0.13 -3.11 8.61 22.53 0.19 -2.92 16 22 C -0.08 -1.77 9.38 22.23 0.21 -1.56 16 23 C -0.17 -3.41 5.46 -19.81 -0.11 -3.52 16 24 C 0.51 10.19 3.36 71.24 0.24 10.43 16 25 F -0.18 -3.63 17.30 44.97 0.78 -2.85 16 26 F -0.17 -3.32 16.45 44.97 0.74 -2.58 16 27 F -0.18 -3.89 16.45 44.97 0.74 -3.15 16 28 C -0.07 -1.36 9.38 22.23 0.21 -1.16 16 29 C -0.07 -1.39 9.59 22.53 0.22 -1.18 16 30 H 0.07 2.03 5.88 -2.39 -0.01 2.01 16 31 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.07 2.00 7.93 -2.38 -0.02 1.98 16 34 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 35 H 0.38 18.16 7.76 -92.71 -0.72 17.44 16 36 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 37 H 0.09 2.26 6.76 -2.39 -0.02 2.24 16 38 H 0.07 2.32 6.61 -2.39 -0.02 2.31 16 39 H 0.17 4.47 2.75 -7.88 -0.02 4.45 16 40 H 0.15 3.02 7.59 -2.91 -0.02 2.99 16 41 H 0.17 2.12 7.59 -2.91 -0.02 2.10 16 42 H 0.15 3.01 7.67 -2.91 -0.02 2.99 16 Total: -1.00 -59.71 355.31 4.99 -54.72 By element: Atomic # 1 Polarization: 29.37 SS G_CDS: 0.36 Total: 29.72 kcal Atomic # 6 Polarization: 1.03 SS G_CDS: 4.36 Total: 5.40 kcal Atomic # 7 Polarization: -103.72 SS G_CDS: -3.96 Total: -107.69 kcal Atomic # 8 Polarization: -18.38 SS G_CDS: -0.05 Total: -18.44 kcal Atomic # 9 Polarization: -10.84 SS G_CDS: 2.26 Total: -8.59 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Total: -59.71 4.99 -54.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989708955.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.759 kcal (2) G-P(sol) polarization free energy of solvation -59.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds