Wall clock time and date at job start Wed Apr 1 2020 02:24:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.58633 * 2 1 4 4 C 1.53192 * 109.58736 * 239.71789 * 2 1 3 5 5 H 1.08993 * 109.49947 * 65.45408 * 4 2 1 6 6 N 1.46508 * 109.49691 * 305.38957 * 4 2 1 7 7 C 1.34775 * 119.99838 * 155.00036 * 6 4 2 8 8 O 1.21584 * 120.00113 * 359.97438 * 7 6 4 9 9 C 1.47543 * 119.99987 * 180.02562 * 7 6 4 10 10 C 1.39928 * 120.17744 * 270.00188 * 9 7 6 11 11 F 1.35100 * 120.07417 * 359.97208 * 10 9 7 12 12 C 1.38171 * 119.85661 * 179.97438 * 10 9 7 13 13 C 1.38339 * 120.20736 * 359.97438 * 12 10 9 14 14 C 1.38444 * 120.36389 * 0.02562 * 13 12 10 15 15 F 1.35101 * 119.93182 * 179.97438 * 14 13 12 16 16 C 1.38443 * 120.14007 * 0.27134 * 14 13 12 17 17 F 1.35099 * 120.10726 * 179.70111 * 16 14 13 18 18 C 1.53040 * 109.31264 * 185.43791 * 4 2 1 19 19 C 1.53038 * 109.53772 * 61.36741 * 18 4 2 20 20 C 1.53199 * 109.31264 * 298.63270 * 19 18 4 21 21 N 1.46925 * 108.77350 * 54.63617 * 20 19 18 22 22 C 1.36936 * 120.63081 * 126.41591 * 21 20 19 23 23 H 1.08001 * 120.00126 * 208.63053 * 22 21 20 24 24 C 1.38816 * 119.99900 * 28.62808 * 22 21 20 25 25 N 1.31618 * 119.99757 * 14.72375 * 24 22 21 26 26 Si 1.86798 * 119.99976 * 194.71680 * 24 22 21 27 27 H 1.48503 * 109.47188 * 60.00266 * 26 24 22 28 28 H 1.48502 * 109.47168 * 180.02562 * 26 24 22 29 29 H 1.48495 * 109.47124 * 300.00427 * 26 24 22 30 30 H 1.08992 * 109.47575 * 180.27701 * 1 2 3 31 31 H 1.09003 * 109.47657 * 300.28667 * 1 2 3 32 32 H 1.09004 * 109.46993 * 60.28242 * 1 2 3 33 33 H 0.96997 * 119.99868 * 334.99948 * 6 4 2 34 34 H 1.07996 * 119.89951 * 179.97438 * 12 10 9 35 35 H 1.08001 * 119.81775 * 179.97438 * 13 12 10 36 36 H 1.08997 * 109.45865 * 181.38319 * 18 4 2 37 37 H 1.08997 * 109.45899 * 301.34463 * 18 4 2 38 38 H 1.09002 * 109.49803 * 178.68518 * 19 18 4 39 39 H 1.08998 * 109.52958 * 58.60234 * 19 18 4 40 40 H 1.09005 * 109.58326 * 294.84984 * 20 19 18 41 41 H 1.08994 * 109.70620 * 174.49381 * 20 19 18 42 42 H 0.97005 * 119.99951 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0435 -0.7278 -1.2463 5 1 1.7634 -0.1657 -2.1372 6 7 1.4539 -2.0676 -1.3080 7 6 1.3308 -2.6957 -2.4940 8 8 1.7086 -2.1503 -3.5129 9 6 0.7365 -4.0447 -2.5562 10 6 1.5496 -5.1776 -2.4403 11 9 2.8829 -5.0395 -2.2714 12 6 0.9860 -6.4377 -2.4989 13 6 -0.3790 -6.5824 -2.6712 14 6 -1.1917 -5.4676 -2.7869 15 9 -2.5236 -5.6190 -2.9555 16 6 -0.6418 -4.1981 -2.7364 17 9 -1.4348 -3.1109 -2.8554 18 6 3.5678 -0.8434 -1.1729 19 6 3.9602 -1.6609 0.0599 20 6 3.4684 -0.9437 1.3211 21 7 2.0253 -0.6991 1.1936 22 6 1.1584 -1.1144 2.1689 23 1 0.1391 -1.3649 1.9145 24 6 1.5897 -1.2135 3.4846 25 7 2.7187 -0.6451 3.8516 26 14 0.5678 -2.1534 4.7343 27 1 0.4256 -3.5651 4.2962 28 1 1.2413 -2.1106 6.0571 29 1 -0.7761 -1.5311 4.8432 30 1 -0.3634 -1.0275 0.0050 31 1 -0.3634 0.5183 0.8874 32 1 -0.3633 0.5095 -0.8925 33 1 1.1522 -2.5025 -0.4952 34 1 1.6130 -7.3125 -2.4099 35 1 -0.8128 -7.5704 -2.7166 36 1 3.9380 -1.3391 -2.0702 37 1 4.0045 0.1528 -1.1021 38 1 5.0448 -1.7627 0.0988 39 1 3.5040 -2.6492 0.0021 40 1 3.9919 0.0063 1.4288 41 1 3.6576 -1.5664 2.1954 42 1 3.0204 -0.7146 4.7709 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993727360.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:24:36 Heat of formation + Delta-G solvation = -134.916817 kcal Electronic energy + Delta-G solvation = -31404.877201 eV Core-core repulsion = 26742.539022 eV Total energy + Delta-G solvation = -4662.338179 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.130 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -50.74637 -50.25339 -49.79844 -41.43588 -39.82525 -38.89586 -35.71072 -34.14421 -33.54102 -32.58175 -31.26517 -30.90906 -27.98595 -26.89260 -25.82070 -24.11460 -23.77654 -22.50780 -22.12832 -20.41488 -19.73931 -19.22546 -19.11361 -18.33185 -17.92823 -17.65689 -17.22042 -17.00665 -16.76633 -16.55244 -16.17942 -16.10482 -15.79596 -15.69203 -15.57575 -15.41304 -15.05191 -14.70933 -14.62715 -14.28824 -14.14769 -13.61487 -13.47204 -13.03479 -13.01314 -12.93447 -12.88668 -12.72666 -12.47582 -12.38573 -12.23497 -11.95869 -11.70573 -11.43300 -11.28783 -11.07702 -10.49567 -10.40876 -10.11737 -9.86989 -8.63338 -7.81816 -5.28508 -0.59541 -0.45921 1.20783 1.50048 1.51041 1.56939 1.82606 2.01667 2.36747 2.53198 2.78282 3.15537 3.25922 3.34057 3.53225 3.55953 3.60167 3.93829 4.00789 4.13964 4.17012 4.35383 4.44214 4.50913 4.59082 4.61792 4.69450 4.71896 4.80301 4.89613 4.95114 4.99632 5.07796 5.17901 5.30031 5.37982 5.41536 5.46776 5.57080 5.72711 5.80326 6.36189 6.43481 6.94629 7.19101 7.88330 8.41168 9.24259 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.011103 B = 0.004419 C = 0.003963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2521.245618 B = 6334.176113 C = 7064.481750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.158 3.842 3 H 0.038 0.962 4 C 0.139 3.861 5 H 0.083 0.917 6 N -0.680 5.680 7 C 0.562 3.438 8 O -0.564 6.564 9 C -0.190 4.190 10 C 0.142 3.858 11 F -0.127 7.127 12 C -0.111 4.111 13 C -0.055 4.055 14 C 0.057 3.943 15 F -0.124 7.124 16 C 0.109 3.891 17 F -0.127 7.127 18 C -0.115 4.115 19 C -0.126 4.126 20 C 0.178 3.822 21 N -0.596 5.596 22 C -0.250 4.250 23 H 0.077 0.923 24 C -0.047 4.047 25 N -0.934 5.934 26 Si 0.958 3.042 27 H -0.276 1.276 28 H -0.301 1.301 29 H -0.280 1.280 30 H 0.051 0.949 31 H 0.050 0.950 32 H 0.063 0.937 33 H 0.410 0.590 34 H 0.202 0.798 35 H 0.209 0.791 36 H 0.055 0.945 37 H 0.073 0.927 38 H 0.064 0.936 39 H 0.049 0.951 40 H -0.003 1.003 41 H 0.060 0.940 42 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.633 -13.956 -13.158 19.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.051 3.949 3 H 0.055 0.945 4 C 0.033 3.967 5 H 0.101 0.899 6 N -0.329 5.329 7 C 0.346 3.654 8 O -0.443 6.443 9 C -0.195 4.195 10 C 0.122 3.878 11 F -0.105 7.105 12 C -0.129 4.129 13 C -0.073 4.073 14 C 0.036 3.964 15 F -0.102 7.102 16 C 0.088 3.912 17 F -0.105 7.105 18 C -0.153 4.153 19 C -0.165 4.165 20 C 0.053 3.947 21 N -0.320 5.320 22 C -0.380 4.380 23 H 0.095 0.905 24 C -0.242 4.242 25 N -0.580 5.580 26 Si 0.787 3.213 27 H -0.201 1.201 28 H -0.227 1.227 29 H -0.206 1.206 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.246 0.754 34 H 0.219 0.781 35 H 0.225 0.775 36 H 0.073 0.927 37 H 0.091 0.909 38 H 0.082 0.918 39 H 0.068 0.932 40 H 0.015 0.985 41 H 0.078 0.922 42 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -4.338 -13.467 -13.687 19.685 hybrid contribution -0.447 0.397 1.368 1.493 sum -4.786 -13.070 -12.319 18.587 Atomic orbital electron populations 1.21700 0.94383 1.01484 1.00991 1.20828 0.94364 0.93654 0.86058 0.94459 1.21511 0.93341 0.82669 0.99195 0.89946 1.45979 1.60133 1.18256 1.08542 1.17980 0.78526 0.84888 0.83979 1.90772 1.51230 1.67167 1.35175 1.19807 0.92968 0.94932 1.11828 1.17652 0.77348 0.93113 0.99700 1.91585 1.29979 1.96679 1.92235 1.21489 0.95721 0.95826 0.99846 1.21551 0.91763 0.99331 0.94628 1.17660 0.79175 0.92071 1.07475 1.91568 1.29531 1.96110 1.93034 1.17465 0.86652 0.83294 1.03797 1.91557 1.72860 1.53038 1.93084 1.21717 0.94924 1.00922 0.97756 1.21951 0.99883 0.98855 0.95779 1.20626 0.83074 0.95990 0.95048 1.44331 1.03034 1.65379 1.19245 1.19422 0.95077 1.36785 0.86720 0.90549 1.25735 0.98804 1.00991 0.98683 1.70158 1.24506 1.46453 1.16866 0.85487 0.78231 0.79279 0.78300 1.20149 1.22718 1.20584 0.93005 0.93069 0.91845 0.75361 0.78118 0.77453 0.92669 0.90875 0.91750 0.93215 0.98505 0.92176 0.94385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.59 7.72 71.98 0.56 -4.03 16 2 C 0.16 6.15 3.19 44.97 0.14 6.29 16 3 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 4 C 0.14 4.91 2.32 45.07 0.10 5.02 16 5 H 0.08 2.91 7.57 -2.39 -0.02 2.89 16 6 N -0.68 -23.34 3.46 -445.32 -1.54 -24.88 16 7 C 0.56 19.28 6.51 86.70 0.56 19.84 16 8 O -0.56 -22.60 16.77 -3.98 -0.07 -22.66 16 9 C -0.19 -5.26 5.64 -20.02 -0.11 -5.37 16 10 C 0.14 3.13 7.29 22.66 0.17 3.30 16 11 F -0.13 -3.26 16.83 44.97 0.76 -2.51 16 12 C -0.11 -1.31 10.01 22.28 0.22 -1.08 16 13 C -0.05 -0.56 10.01 22.34 0.22 -0.34 16 14 C 0.06 1.06 7.29 22.37 0.16 1.22 16 15 F -0.12 -2.47 17.18 44.97 0.77 -1.70 16 16 C 0.11 2.79 7.30 22.71 0.17 2.96 16 17 F -0.13 -3.82 16.74 44.97 0.75 -3.06 16 18 C -0.11 -3.99 5.58 30.62 0.17 -3.81 16 19 C -0.13 -4.70 5.93 30.67 0.18 -4.52 16 20 C 0.18 8.19 5.29 86.36 0.46 8.64 16 21 N -0.60 -27.31 2.65 -675.21 -1.79 -29.10 16 22 C -0.25 -12.46 8.63 84.03 0.73 -11.74 16 23 H 0.08 3.66 6.20 -2.91 -0.02 3.64 16 24 C -0.05 -2.45 4.97 84.86 0.42 -2.03 16 25 N -0.93 -52.83 11.09 21.65 0.24 -52.59 16 26 Si 0.96 42.75 29.58 68.60 2.03 44.78 16 27 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 28 H -0.30 -13.80 7.11 99.48 0.71 -13.10 16 29 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 30 H 0.05 1.85 6.40 -2.39 -0.02 1.84 16 31 H 0.05 1.96 7.66 -2.39 -0.02 1.95 16 32 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.41 14.44 7.77 -92.71 -0.72 13.72 16 34 H 0.20 0.79 8.06 -2.91 -0.02 0.76 16 35 H 0.21 0.28 8.06 -2.91 -0.02 0.25 16 36 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 38 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 39 H 0.05 1.89 7.53 -2.39 -0.02 1.87 16 40 H 0.00 -0.16 8.14 -2.38 -0.02 -0.18 16 41 H 0.06 3.14 6.01 -2.39 -0.01 3.13 16 42 H 0.25 13.78 8.31 -92.70 -0.77 13.01 16 Total: -1.00 -65.95 355.71 5.67 -60.28 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: 0.36 Total: 17.11 kcal Atomic # 6 Polarization: 10.19 SS G_CDS: 4.15 Total: 14.34 kcal Atomic # 7 Polarization: -103.48 SS G_CDS: -3.09 Total: -106.58 kcal Atomic # 8 Polarization: -22.60 SS G_CDS: -0.07 Total: -22.66 kcal Atomic # 9 Polarization: -9.55 SS G_CDS: 2.28 Total: -7.27 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Total: -65.95 5.67 -60.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993727360.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.639 kcal (2) G-P(sol) polarization free energy of solvation -65.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds