Wall clock time and date at job start Wed Apr 1 2020 02:25:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09008 * 109.70027 * 2 1 4 4 C 1.53192 * 109.59052 * 120.35603 * 2 1 3 5 5 H 1.08996 * 109.49597 * 54.43849 * 4 2 1 6 6 N 1.46504 * 109.49374 * 294.37601 * 4 2 1 7 7 C 1.34785 * 119.99647 * 155.06224 * 6 4 2 8 8 O 1.21589 * 120.00048 * 0.02562 * 7 6 4 9 9 C 1.47572 * 119.99718 * 179.97438 * 7 6 4 10 10 C 1.39736 * 120.13673 * 359.97438 * 9 7 6 11 11 C 1.37749 * 119.94952 * 180.02562 * 10 9 7 12 12 C 1.38716 * 120.21140 * 0.27809 * 11 10 9 13 13 F 1.35095 * 119.87101 * 179.70145 * 12 11 10 14 14 C 1.38674 * 120.26568 * 359.44499 * 12 11 10 15 15 F 1.35098 * 119.97342 * 180.27447 * 14 12 11 16 16 C 1.38381 * 120.04716 * 0.55450 * 14 12 11 17 17 F 1.35098 * 120.10299 * 179.74367 * 16 14 12 18 18 C 1.53039 * 109.34245 * 174.41078 * 4 2 1 19 19 C 1.53040 * 109.53711 * 298.68243 * 18 4 2 20 20 C 1.53197 * 109.33800 * 61.31402 * 19 18 4 21 21 N 1.46924 * 108.78000 * 305.38263 * 20 19 18 22 22 C 1.36935 * 120.63357 * 233.63109 * 21 20 19 23 23 H 1.07993 * 120.00383 * 150.13794 * 22 21 20 24 24 C 1.38820 * 119.99523 * 330.13833 * 22 21 20 25 25 N 1.31615 * 119.99934 * 344.50707 * 24 22 21 26 26 Si 1.86799 * 119.99665 * 164.50497 * 24 22 21 27 27 H 1.48504 * 109.47025 * 60.00062 * 26 24 22 28 28 H 1.48501 * 109.47196 * 179.97438 * 26 24 22 29 29 H 1.48493 * 109.47345 * 300.00140 * 26 24 22 30 30 H 1.08994 * 109.47284 * 299.63982 * 1 2 3 31 31 H 1.09001 * 109.47639 * 59.64486 * 1 2 3 32 32 H 1.09004 * 109.47076 * 179.64228 * 1 2 3 33 33 H 0.96999 * 120.00345 * 335.06727 * 6 4 2 34 34 H 1.08001 * 120.02501 * 0.02562 * 10 9 7 35 35 H 1.08002 * 119.89936 * 180.02562 * 11 10 9 36 36 H 1.08999 * 109.45838 * 58.66688 * 18 4 2 37 37 H 1.08995 * 109.46448 * 178.63123 * 18 4 2 38 38 H 1.08995 * 109.47387 * 301.36948 * 19 18 4 39 39 H 1.08992 * 109.52487 * 181.29645 * 19 18 4 40 40 H 1.09001 * 109.58583 * 185.59264 * 20 19 18 41 41 H 1.09007 * 109.69923 * 65.24191 * 20 19 18 42 42 H 0.97008 * 119.99425 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8974 1.0263 0.0000 4 6 2.0436 -0.7294 1.2454 5 1 1.6026 -1.7251 1.2916 6 7 1.6705 0.0268 2.4435 7 6 1.5485 -0.6047 3.6280 8 8 1.7484 -1.8017 3.7022 9 6 1.1732 0.1570 4.8349 10 6 0.9443 1.5331 4.7531 11 6 0.5947 2.2404 5.8822 12 6 0.4746 1.5921 7.1027 13 9 0.1373 2.2936 8.2068 14 6 0.6942 0.2259 7.1929 15 9 0.5701 -0.4005 8.3835 16 6 1.0459 -0.4954 6.0655 17 9 1.2651 -1.8256 6.1532 18 6 3.5675 -0.8485 1.1706 19 6 3.9570 -1.6655 -0.0635 20 6 3.4650 -0.9468 -1.3238 21 7 2.0225 -0.6994 -1.1945 22 6 1.1536 -1.1134 -2.1686 23 1 0.1399 -1.3809 -1.9097 24 6 1.5759 -1.1891 -3.4888 25 7 2.6864 -0.5880 -3.8600 26 14 0.5681 -2.1443 -4.7384 27 1 -0.7926 -1.5566 -4.8301 28 1 1.2286 -2.0718 -6.0664 29 1 0.4668 -3.5631 -4.3121 30 1 -0.3633 0.5082 0.8931 31 1 -0.3634 0.5193 -0.8868 32 1 -0.3633 -1.0277 -0.0064 33 1 1.5113 0.9818 2.3843 34 1 1.0414 2.0417 3.8053 35 1 0.4176 3.3039 5.8180 36 1 4.0065 0.1466 1.1000 37 1 3.9374 -1.3457 2.0673 38 1 3.4984 -2.6526 -0.0054 39 1 5.0412 -1.7698 -0.1040 40 1 3.6518 -1.5715 -2.1972 41 1 3.9901 0.0021 -1.4342 42 1 2.9813 -0.6407 -4.7827 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993727965.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:25:00 Heat of formation + Delta-G solvation = -118.515160 kcal Electronic energy + Delta-G solvation = -30062.670143 eV Core-core repulsion = 25401.043193 eV Total energy + Delta-G solvation = -4661.626950 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.130 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -50.15194 -49.53421 -48.78753 -40.37570 -38.73952 -37.54222 -34.50515 -32.74725 -31.94005 -31.17705 -31.08615 -29.12472 -26.36209 -25.14007 -24.57490 -23.67965 -22.28108 -20.78856 -20.65305 -19.67505 -18.86016 -18.37964 -18.08222 -17.19484 -16.84468 -16.50384 -16.20824 -15.86193 -15.69165 -15.31470 -15.07000 -14.95994 -14.80886 -14.67920 -14.37010 -13.82667 -13.76533 -13.55081 -13.42829 -12.89891 -12.63522 -12.57209 -12.33480 -12.30228 -11.78086 -11.59709 -11.18448 -10.96095 -10.79769 -10.65012 -10.37385 -10.23385 -10.09959 -10.08102 -9.73443 -9.49274 -9.45254 -9.41707 -8.80831 -8.50099 -6.72588 -5.84513 -3.29529 -0.11707 0.23024 2.21843 2.73181 3.05468 3.18144 3.35419 3.41613 3.43406 3.65106 3.73670 3.89750 4.08261 4.25046 4.45853 4.86617 5.04261 5.18660 5.23526 5.24225 5.32573 5.33945 5.44676 5.52549 5.71160 5.89180 5.99033 6.01706 6.13569 6.25379 6.32466 6.45384 6.51298 6.62502 6.69332 6.77297 6.91155 6.98700 7.34433 7.49848 7.61691 7.77077 8.15222 8.39859 9.14987 9.77393 10.33586 11.24203 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.023357 B = 0.002515 C = 0.002458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.508724 B =11131.928736 C =11386.946424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.168 3.832 3 H 0.029 0.971 4 C 0.130 3.870 5 H 0.089 0.911 6 N -0.707 5.707 7 C 0.554 3.446 8 O -0.518 6.518 9 C -0.149 4.149 10 C -0.037 4.037 11 C -0.142 4.142 12 C 0.120 3.880 13 F -0.115 7.115 14 C 0.021 3.979 15 F -0.114 7.114 16 C 0.157 3.843 17 F -0.092 7.092 18 C -0.117 4.117 19 C -0.140 4.140 20 C 0.169 3.831 21 N -0.581 5.581 22 C -0.256 4.256 23 H 0.070 0.930 24 C 0.007 3.993 25 N -0.901 5.901 26 Si 0.902 3.098 27 H -0.282 1.282 28 H -0.291 1.291 29 H -0.283 1.283 30 H 0.038 0.962 31 H 0.065 0.935 32 H 0.055 0.945 33 H 0.395 0.605 34 H 0.158 0.842 35 H 0.162 0.838 36 H 0.055 0.945 37 H 0.051 0.949 38 H 0.057 0.943 39 H 0.052 0.948 40 H 0.087 0.913 41 H 0.020 0.980 42 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.566 8.000 19.203 20.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.060 3.940 3 H 0.046 0.954 4 C 0.025 3.975 5 H 0.108 0.892 6 N -0.358 5.358 7 C 0.339 3.661 8 O -0.395 6.395 9 C -0.154 4.154 10 C -0.056 4.056 11 C -0.161 4.161 12 C 0.099 3.901 13 F -0.094 7.094 14 C 0.000 4.000 15 F -0.092 7.092 16 C 0.135 3.865 17 F -0.070 7.070 18 C -0.156 4.156 19 C -0.180 4.180 20 C 0.044 3.956 21 N -0.304 5.304 22 C -0.385 4.385 23 H 0.088 0.912 24 C -0.193 4.193 25 N -0.545 5.545 26 Si 0.732 3.268 27 H -0.209 1.209 28 H -0.216 1.216 29 H -0.209 1.209 30 H 0.057 0.943 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.230 0.770 34 H 0.175 0.825 35 H 0.179 0.821 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.076 0.924 39 H 0.071 0.929 40 H 0.105 0.895 41 H 0.038 0.962 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -2.359 7.074 19.111 20.515 hybrid contribution -0.528 -0.196 -0.136 0.580 sum -2.888 6.877 18.976 20.389 Atomic orbital electron populations 1.21830 0.95577 1.01861 1.00238 1.20560 0.93280 0.93562 0.86595 0.95397 1.21922 0.95376 0.96985 0.83253 0.89246 1.46034 1.69474 1.12190 1.08082 1.17685 0.78550 0.87096 0.82772 1.90883 1.49423 1.13942 1.85230 1.20227 1.06873 0.94874 0.93413 1.21208 0.93557 0.91469 0.99392 1.21098 1.02937 1.02281 0.89750 1.17583 1.00636 0.87283 0.84599 1.91587 1.89203 1.77799 1.50781 1.17444 1.10412 0.90040 0.82089 1.91584 1.93793 1.81895 1.41976 1.17337 0.98459 0.79078 0.91622 1.91678 1.90797 1.28100 1.96430 1.21767 0.95094 1.00208 0.98528 1.22183 0.99340 0.99747 0.96738 1.20836 0.83072 0.97228 0.94461 1.44015 1.03156 1.65057 1.18186 1.19109 0.95235 1.38157 0.85998 0.91240 1.25085 0.97860 0.99325 0.96982 1.70014 1.24080 1.43530 1.16885 0.86382 0.79574 0.80306 0.80557 1.20850 1.21640 1.20933 0.94343 0.91640 0.92564 0.76960 0.82496 0.82084 0.92628 0.93067 0.92443 0.92897 0.89462 0.96188 0.93542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 7.84 37.15 0.29 -2.06 16 2 C 0.17 3.12 3.03 -67.60 -0.21 2.92 16 3 H 0.03 0.52 8.14 -51.92 -0.42 0.10 16 4 C 0.13 2.17 1.99 -67.81 -0.14 2.04 16 5 H 0.09 1.76 7.58 -51.93 -0.39 1.36 16 6 N -0.71 -9.04 4.52 -54.72 -0.25 -9.29 16 7 C 0.55 7.74 7.73 -12.45 -0.10 7.65 16 8 O -0.52 -9.52 15.00 5.29 0.08 -9.44 16 9 C -0.15 -1.58 5.88 -104.92 -0.62 -2.19 16 10 C -0.04 -0.24 9.53 -39.20 -0.37 -0.62 16 11 C -0.14 -0.80 10.00 -39.58 -0.40 -1.20 16 12 C 0.12 0.98 7.31 -39.24 -0.29 0.69 16 13 F -0.12 -1.00 17.17 2.25 0.04 -0.96 16 14 C 0.02 0.22 7.30 -39.37 -0.29 -0.07 16 15 F -0.11 -1.31 17.09 2.25 0.04 -1.28 16 16 C 0.16 1.84 7.29 -38.92 -0.28 1.56 16 17 F -0.09 -1.35 15.46 2.25 0.03 -1.31 16 18 C -0.12 -1.98 5.46 -26.69 -0.15 -2.12 16 19 C -0.14 -2.65 6.08 -26.61 -0.16 -2.81 16 20 C 0.17 3.84 5.28 -3.71 -0.02 3.82 16 21 N -0.58 -13.51 2.99 -164.77 -0.49 -14.00 16 22 C -0.26 -6.56 8.58 -15.06 -0.13 -6.69 16 23 H 0.07 1.75 6.23 -52.49 -0.33 1.42 16 24 C 0.01 0.17 4.94 -17.43 -0.09 0.09 16 25 N -0.90 -25.07 11.23 55.49 0.62 -24.44 16 26 Si 0.90 21.03 29.58 -169.99 -5.03 16.00 16 27 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 28 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 29 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 30 H 0.04 0.52 7.78 -51.93 -0.40 0.11 16 31 H 0.06 1.21 7.67 -51.93 -0.40 0.81 16 32 H 0.06 1.03 7.40 -51.93 -0.38 0.65 16 33 H 0.40 3.68 6.63 -40.82 -0.27 3.41 16 34 H 0.16 0.58 6.40 -52.49 -0.34 0.24 16 35 H 0.16 0.43 8.06 -52.49 -0.42 0.01 16 36 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.09 2.24 6.15 -51.93 -0.32 1.92 16 41 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 353.66 15.07 5.33 5.33 Total: -1.00 -30.91 353.66 -7.48 -38.39 By element: Atomic # 1 Polarization: 4.93 SS G_CDS: -4.93 Total: 0.01 kcal Atomic # 6 Polarization: 3.93 SS G_CDS: -2.93 Total: 0.99 kcal Atomic # 7 Polarization: -47.61 SS G_CDS: -0.12 Total: -47.73 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: 0.08 Total: -9.44 kcal Atomic # 9 Polarization: -3.66 SS G_CDS: 0.11 Total: -3.55 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.03 Total: 16.00 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.91 -7.48 -38.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993727965.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.126 kcal (2) G-P(sol) polarization free energy of solvation -30.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds