Wall clock time and date at job start Wed Apr 1 2020 02:29:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08991 * 109.50345 * 2 1 4 4 C 1.53195 * 109.49867 * 239.93418 * 2 1 3 5 5 N 1.46925 * 108.77600 * 185.38524 * 4 2 1 6 6 C 1.34778 * 120.62703 * 233.58763 * 5 4 2 7 7 O 1.21599 * 120.00426 * 359.97438 * 6 5 4 8 8 C 1.47426 * 119.99624 * 180.02562 * 6 5 4 9 9 C 1.39976 * 120.16403 * 89.97676 * 8 6 5 10 10 F 1.35097 * 120.08423 * 0.02562 * 9 8 6 11 11 C 1.38098 * 119.83096 * 180.02562 * 9 8 6 12 12 C 1.38605 * 120.16440 * 359.97438 * 11 9 8 13 13 F 1.35103 * 119.83356 * 179.97438 * 12 11 9 14 14 C 1.38596 * 120.32918 * 359.97438 * 12 11 9 15 15 C 1.38097 * 120.16659 * 0.02562 * 14 12 11 16 16 F 1.35099 * 120.08167 * 179.97438 * 15 14 12 17 17 C 1.46926 * 118.74019 * 53.86331 * 5 4 2 18 18 C 1.53623 * 108.54233 * 306.09270 * 17 5 4 19 19 C 1.53044 * 109.24190 * 54.85625 * 18 17 5 20 20 H 1.09002 * 109.45790 * 58.53082 * 19 18 17 21 21 N 1.46498 * 109.44846 * 178.49738 * 19 18 17 22 22 C 1.36935 * 120.00284 * 275.06004 * 21 19 18 23 23 H 1.07997 * 119.99713 * 0.02562 * 22 21 19 24 24 C 1.38811 * 120.00392 * 180.02562 * 22 21 19 25 25 N 1.31614 * 119.99685 * 359.97438 * 24 22 21 26 26 Si 1.86796 * 120.00262 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47265 * 59.99484 * 26 24 22 28 28 H 1.48498 * 109.47532 * 180.02562 * 26 24 22 29 29 H 1.48505 * 109.46983 * 299.99899 * 26 24 22 30 30 H 1.09002 * 109.47765 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47061 * 300.06475 * 1 2 3 32 32 H 1.09006 * 109.46890 * 60.05908 * 1 2 3 33 33 H 1.08997 * 109.58478 * 65.59455 * 4 2 1 34 34 H 1.09007 * 109.58571 * 305.17514 * 4 2 1 35 35 H 1.08002 * 119.91651 * 180.25075 * 11 9 8 36 36 H 1.08004 * 119.91276 * 180.02562 * 14 12 11 37 37 H 1.09004 * 109.58409 * 65.92372 * 17 5 4 38 38 H 1.08996 * 109.58679 * 186.35106 * 17 5 4 39 39 H 1.09000 * 109.63525 * 294.86992 * 18 17 5 40 40 H 1.08996 * 109.45832 * 174.74228 * 18 17 5 41 41 H 0.96998 * 120.00027 * 95.06449 * 21 19 18 42 42 H 0.97011 * 119.99991 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0413 -0.7235 -1.2498 5 7 3.5046 -0.8282 -1.1701 6 6 4.2807 -0.3850 -2.1790 7 8 3.7709 0.1067 -3.1674 8 6 5.7476 -0.4975 -2.0847 9 6 6.3970 -1.6437 -2.5578 10 9 5.6811 -2.6511 -3.1034 11 6 7.7714 -1.7420 -2.4655 12 6 8.5076 -0.7092 -1.9066 13 9 9.8518 -0.8127 -1.8192 14 6 7.8716 0.4292 -1.4370 15 6 6.4979 0.5419 -1.5224 16 9 5.8797 1.6521 -1.0636 17 6 4.1056 -1.4308 0.0275 18 6 3.5714 -0.6944 1.2654 19 6 2.0414 -0.7231 1.2482 20 1 1.6977 -1.7575 1.2350 21 7 1.5274 -0.0532 2.4453 22 6 1.3978 -0.7495 3.6173 23 1 1.6749 -1.7924 3.6591 24 6 0.9103 -0.1148 4.7515 25 7 0.5731 1.1564 4.7006 26 14 0.7343 -1.0645 6.3503 27 1 2.0629 -1.5783 6.7698 28 1 0.1954 -0.1663 7.4030 29 1 -0.1962 -2.2043 6.1492 30 1 -0.3635 -1.0276 0.0005 31 1 -0.3633 0.5148 0.8894 32 1 -0.3633 0.5129 -0.8906 33 1 1.7633 -0.1577 -2.1389 34 1 1.6055 -1.7215 -1.2982 35 1 8.2742 -2.6240 -2.8339 36 1 8.4519 1.2301 -1.0031 37 1 3.8348 -2.4853 0.0811 38 1 5.1901 -1.3318 -0.0186 39 1 3.9160 0.3396 1.2535 40 1 3.9344 -1.1885 2.1666 41 1 1.2788 0.8837 2.4078 42 1 0.2327 1.6000 5.4933 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036161900.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:29:25 Heat of formation + Delta-G solvation = -128.355292 kcal Electronic energy + Delta-G solvation = -30519.629600 eV Core-core repulsion = 25857.575951 eV Total energy + Delta-G solvation = -4662.053650 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.130 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -49.63166 -49.57745 -49.48991 -40.45856 -38.74793 -37.61763 -34.70861 -33.00449 -31.55629 -31.28492 -31.18708 -29.34337 -26.64227 -25.28106 -24.02236 -23.73281 -22.78449 -21.72743 -20.43463 -19.41261 -19.06159 -18.39409 -17.69273 -17.10825 -16.87929 -16.47868 -16.44198 -16.25622 -15.81850 -15.74730 -15.46169 -14.99164 -14.92481 -14.76014 -14.32979 -13.98829 -13.81274 -13.36710 -13.22591 -12.97465 -12.78880 -12.53245 -12.46763 -12.33816 -12.13215 -11.78494 -11.64438 -11.23412 -10.96323 -10.85197 -10.69612 -10.45569 -10.25751 -10.16255 -9.78742 -9.66621 -9.50611 -9.37277 -8.93446 -8.63063 -7.00298 -5.80322 -3.09373 0.06979 0.26272 2.25808 2.47708 2.82430 2.97200 3.40580 3.45506 3.46520 3.58329 3.63980 3.98935 4.17436 4.20990 4.54657 4.92396 4.99620 5.05855 5.10561 5.15265 5.19349 5.22230 5.27800 5.33480 5.47486 5.51696 5.63647 5.71780 5.88574 6.01858 6.03089 6.09601 6.24938 6.29646 6.39175 6.44441 6.56352 6.75474 6.87585 7.00168 7.26987 7.65117 7.91912 8.37695 9.49208 10.06151 10.41160 11.41993 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.014183 B = 0.003155 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1973.748098 B = 8873.609556 C = 9719.621854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.110 4.110 3 H 0.071 0.929 4 C 0.120 3.880 5 N -0.590 5.590 6 C 0.565 3.435 7 O -0.526 6.526 8 C -0.201 4.201 9 C 0.193 3.807 10 F -0.111 7.111 11 C -0.203 4.203 12 C 0.177 3.823 13 F -0.118 7.118 14 C -0.201 4.201 15 C 0.197 3.803 16 F -0.106 7.106 17 C 0.105 3.895 18 C -0.151 4.151 19 C 0.184 3.816 20 H 0.049 0.951 21 N -0.720 5.720 22 C -0.241 4.241 23 H 0.069 0.931 24 C -0.011 4.011 25 N -0.932 5.932 26 Si 0.905 3.095 27 H -0.286 1.286 28 H -0.291 1.291 29 H -0.286 1.286 30 H 0.051 0.949 31 H 0.075 0.925 32 H 0.043 0.957 33 H 0.091 0.909 34 H 0.072 0.928 35 H 0.163 0.837 36 H 0.164 0.836 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.061 0.939 40 H 0.078 0.922 41 H 0.384 0.616 42 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.971 -5.239 -15.289 22.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.131 4.131 3 H 0.089 0.911 4 C -0.002 4.002 5 N -0.321 5.321 6 C 0.351 3.649 7 O -0.403 6.403 8 C -0.206 4.206 9 C 0.173 3.827 10 F -0.089 7.089 11 C -0.222 4.222 12 C 0.157 3.843 13 F -0.096 7.096 14 C -0.221 4.221 15 C 0.177 3.823 16 F -0.084 7.084 17 C -0.018 4.018 18 C -0.192 4.192 19 C 0.074 3.926 20 H 0.067 0.933 21 N -0.360 5.360 22 C -0.372 4.372 23 H 0.087 0.913 24 C -0.207 4.207 25 N -0.580 5.580 26 Si 0.736 3.264 27 H -0.213 1.213 28 H -0.217 1.217 29 H -0.213 1.213 30 H 0.070 0.930 31 H 0.094 0.906 32 H 0.063 0.937 33 H 0.109 0.891 34 H 0.090 0.910 35 H 0.181 0.819 36 H 0.182 0.818 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.080 0.920 40 H 0.096 0.904 41 H 0.218 0.782 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 14.632 -5.092 -15.636 22.012 hybrid contribution 0.025 -0.180 1.085 1.100 sum 14.657 -5.271 -14.551 21.316 Atomic orbital electron populations 1.21653 0.93865 1.01850 1.01958 1.21757 0.96757 1.00141 0.94395 0.91068 1.21826 0.77366 1.01288 0.99748 1.48136 1.07513 1.58778 1.17697 1.17611 0.84998 0.78863 0.83465 1.90820 1.74116 1.44457 1.30876 1.19997 0.96116 0.95958 1.08534 1.16738 0.88336 0.83855 0.93804 1.91615 1.77786 1.57263 1.82208 1.20983 0.92197 1.02059 1.07001 1.16892 0.77550 0.93343 0.96549 1.91595 1.28324 1.96087 1.93560 1.21034 0.93189 1.00569 1.07301 1.16787 0.89265 0.82686 0.93576 1.91655 1.82657 1.48754 1.85337 1.22019 0.97319 0.97675 0.84767 1.22783 1.00552 1.00421 0.95465 1.20189 0.90183 0.95776 0.86481 0.93291 1.42389 1.76439 1.11458 1.05688 1.19164 1.36179 0.94111 0.87715 0.91279 1.24722 1.01956 0.95999 0.98029 1.69649 1.49791 1.09491 1.29025 0.86303 0.77736 0.78732 0.83596 1.21322 1.21737 1.21288 0.92979 0.90640 0.93742 0.89089 0.91017 0.81946 0.81837 0.90824 0.91115 0.91983 0.90352 0.78162 0.93437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 9.02 37.15 0.34 -1.82 16 2 C -0.11 -1.79 2.46 -90.50 -0.22 -2.02 16 3 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 4 C 0.12 1.73 5.71 -3.71 -0.02 1.71 16 5 N -0.59 -8.48 2.97 -173.77 -0.52 -8.99 16 6 C 0.57 8.55 6.42 -12.52 -0.08 8.47 16 7 O -0.53 -9.53 16.52 5.28 0.09 -9.44 16 8 C -0.20 -2.44 3.63 -104.85 -0.38 -2.82 16 9 C 0.19 1.96 7.29 -38.98 -0.28 1.67 16 10 F -0.11 -1.23 16.83 2.25 0.04 -1.19 16 11 C -0.20 -1.53 9.99 -39.50 -0.39 -1.92 16 12 C 0.18 1.35 7.30 -39.31 -0.29 1.06 16 13 F -0.12 -0.89 17.26 2.25 0.04 -0.85 16 14 C -0.20 -1.65 9.98 -39.50 -0.39 -2.05 16 15 C 0.20 2.18 7.15 -38.98 -0.28 1.90 16 16 F -0.11 -1.38 16.83 2.25 0.04 -1.34 16 17 C 0.11 1.38 6.37 -3.49 -0.02 1.36 16 18 C -0.15 -2.47 5.67 -26.38 -0.15 -2.62 16 19 C 0.18 3.39 2.19 -67.88 -0.15 3.25 16 20 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 21 N -0.72 -16.94 4.41 -53.38 -0.24 -17.17 16 22 C -0.24 -6.33 9.93 -15.06 -0.15 -6.48 16 23 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 24 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 25 N -0.93 -27.33 13.06 55.49 0.72 -26.61 16 26 Si 0.91 21.75 29.55 -169.99 -5.02 16.72 16 27 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 28 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 29 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 30 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.07 1.41 7.37 -51.93 -0.38 1.03 16 32 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.09 1.36 7.00 -51.93 -0.36 0.99 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.16 0.83 8.06 -52.49 -0.42 0.41 16 36 H 0.16 1.00 8.06 -52.48 -0.42 0.58 16 37 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.07 0.82 6.23 -51.93 -0.32 0.49 16 39 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 41 H 0.38 9.81 7.50 -40.82 -0.31 9.51 16 42 H 0.26 7.33 8.31 -40.82 -0.34 7.00 16 LS Contribution 362.79 15.07 5.47 5.47 Total: -1.00 -30.67 362.79 -7.10 -37.77 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -5.15 Total: 6.35 kcal Atomic # 6 Polarization: 1.87 SS G_CDS: -2.57 Total: -0.71 kcal Atomic # 7 Polarization: -52.75 SS G_CDS: -0.03 Total: -52.77 kcal Atomic # 8 Polarization: -9.53 SS G_CDS: 0.09 Total: -9.44 kcal Atomic # 9 Polarization: -3.50 SS G_CDS: 0.11 Total: -3.39 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.67 -7.10 -37.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036161900.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.585 kcal (2) G-P(sol) polarization free energy of solvation -30.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds