Wall clock time and date at job start Wed Apr 1 2020 02:29:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08993 * 109.49640 * 2 1 4 4 C 1.53191 * 109.49730 * 120.09897 * 2 1 3 5 5 N 1.46928 * 108.77499 * 174.58203 * 4 2 1 6 6 C 1.34773 * 120.62770 * 126.43312 * 5 4 2 7 7 O 1.21609 * 120.00380 * 0.02562 * 6 5 4 8 8 C 1.47423 * 119.99981 * 180.02562 * 6 5 4 9 9 C 1.39976 * 120.16421 * 89.72880 * 8 6 5 10 10 F 1.35106 * 120.08341 * 359.97272 * 9 8 6 11 11 C 1.38105 * 119.83174 * 179.70024 * 9 8 6 12 12 C 1.38595 * 120.16533 * 0.57452 * 11 9 8 13 13 F 1.35096 * 119.83656 * 179.69850 * 12 11 9 14 14 C 1.38603 * 120.32888 * 359.71658 * 12 11 9 15 15 C 1.38098 * 120.16533 * 359.97438 * 14 12 11 16 16 F 1.35102 * 120.08259 * 180.02562 * 15 14 12 17 17 C 1.46931 * 118.76737 * 306.41453 * 5 4 2 18 18 C 1.53196 * 108.77131 * 53.55408 * 17 5 4 19 19 C 1.53039 * 109.33748 * 305.41286 * 18 17 5 20 20 H 1.09001 * 109.45915 * 181.36781 * 19 18 17 21 21 N 1.46494 * 109.46065 * 301.33071 * 19 18 17 22 22 C 1.36940 * 119.99934 * 274.99578 * 21 19 18 23 23 H 1.07994 * 120.00102 * 0.02562 * 22 21 19 24 24 C 1.38817 * 119.99942 * 179.97438 * 22 21 19 25 25 N 1.31615 * 120.00137 * 0.02562 * 24 22 21 26 26 Si 1.86804 * 119.99837 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.47196 * 0.02562 * 26 24 22 28 28 H 1.48500 * 109.46924 * 120.00494 * 26 24 22 29 29 H 1.48501 * 109.47142 * 240.00473 * 26 24 22 30 30 H 1.08998 * 109.47042 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46986 * 300.05989 * 1 2 3 32 32 H 1.08997 * 109.47167 * 60.06197 * 1 2 3 33 33 H 1.08997 * 109.59002 * 294.37021 * 4 2 1 34 34 H 1.09004 * 109.58938 * 54.80058 * 4 2 1 35 35 H 1.08001 * 119.91365 * 180.26979 * 11 9 8 36 36 H 1.08000 * 119.91482 * 180.02562 * 14 12 11 37 37 H 1.08996 * 109.56502 * 293.78102 * 17 5 4 38 38 H 1.09001 * 109.61713 * 173.35524 * 17 5 4 39 39 H 1.09002 * 109.49815 * 185.44599 * 18 17 5 40 40 H 1.09000 * 109.49595 * 65.37996 * 18 17 5 41 41 H 0.96998 * 120.00363 * 95.00221 * 21 19 18 42 42 H 0.96994 * 120.00337 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0413 -0.7242 1.2494 5 7 3.5046 -0.8296 1.1692 6 6 4.2811 -0.3876 2.1782 7 8 3.7718 0.1038 3.1672 8 6 5.7480 -0.4996 2.0831 9 6 6.4973 0.5375 1.5152 10 9 5.8780 1.6451 1.0517 11 6 7.8716 0.4279 1.4352 12 6 8.5081 -0.7103 1.9044 13 9 9.8523 -0.8130 1.8173 14 6 7.7723 -1.7439 2.4624 15 6 6.3979 -1.6460 2.5551 16 9 5.6824 -2.6543 3.0998 17 6 4.1059 -1.4263 -0.0313 18 6 3.5708 -0.6947 -1.2663 19 6 2.0408 -0.7228 -1.2486 20 1 1.6581 -0.2238 -2.1390 21 7 1.5783 -2.1127 -1.2315 22 6 1.4467 -2.8050 -2.4056 23 1 1.6842 -2.3265 -3.3442 24 6 1.0090 -4.1223 -2.3893 25 7 0.7200 -4.7056 -1.2454 26 14 0.8302 -5.0669 -3.9909 27 1 1.2157 -4.1921 -5.1273 28 1 1.7139 -6.2600 -3.9632 29 1 -0.5808 -5.4997 -4.1555 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5148 0.8895 32 1 -0.3633 0.5129 -0.8905 33 1 1.7639 -0.1586 2.1388 34 1 1.6053 -1.7221 1.2975 35 1 8.4514 1.2292 1.0013 36 1 8.2752 -2.6276 2.8264 37 1 3.8387 -2.4815 -0.0873 38 1 5.1902 -1.3237 0.0129 39 1 3.9334 -1.1890 -2.1675 40 1 3.9159 0.3392 -1.2546 41 1 1.3653 -2.5426 -0.3885 42 1 0.4138 -5.6259 -1.2341 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036161935.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:29:36 Heat of formation + Delta-G solvation = -126.286778 kcal Electronic energy + Delta-G solvation = -30994.293862 eV Core-core repulsion = 26332.329910 eV Total energy + Delta-G solvation = -4661.963952 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.130 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.55845 -49.45936 -49.40774 -40.35023 -38.70793 -37.60500 -34.37031 -32.95707 -31.49409 -31.18407 -31.09727 -29.22432 -26.52007 -25.29945 -23.83150 -23.63987 -23.42449 -21.72598 -20.36361 -19.02528 -18.53447 -18.25752 -17.52661 -17.27624 -16.76673 -16.37544 -16.35947 -16.13216 -15.70376 -15.66349 -15.34378 -15.00014 -14.76239 -14.46474 -14.43134 -14.02327 -13.84589 -13.34303 -13.13023 -12.88431 -12.69967 -12.57095 -12.34948 -12.28890 -12.09004 -11.61855 -11.42517 -11.23154 -10.95294 -10.83981 -10.54858 -10.53858 -10.19365 -9.98840 -9.88865 -9.59446 -9.41488 -9.26820 -8.97012 -8.37283 -7.01700 -5.82349 -3.11121 0.16955 0.35406 2.41422 2.57755 2.96749 3.09609 3.38985 3.45349 3.47325 3.67764 3.73077 4.13456 4.27399 4.29925 4.54445 5.04570 5.12926 5.15005 5.20311 5.24086 5.27161 5.32045 5.40921 5.46268 5.53948 5.66883 5.75533 5.86508 6.00593 6.02786 6.11635 6.17932 6.27052 6.33649 6.45857 6.53409 6.63676 6.70320 6.86547 6.94224 7.48298 7.66244 8.08783 8.35901 9.47790 10.03784 10.38899 11.40022 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.012892 B = 0.003650 C = 0.003302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2171.345448 B = 7668.386565 C = 8477.049253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.109 4.109 3 H 0.067 0.933 4 C 0.118 3.882 5 N -0.584 5.584 6 C 0.562 3.438 7 O -0.531 6.531 8 C -0.197 4.197 9 C 0.194 3.806 10 F -0.110 7.110 11 C -0.203 4.203 12 C 0.175 3.825 13 F -0.118 7.118 14 C -0.202 4.202 15 C 0.196 3.804 16 F -0.107 7.107 17 C 0.113 3.887 18 C -0.149 4.149 19 C 0.179 3.821 20 H 0.053 0.947 21 N -0.719 5.719 22 C -0.238 4.238 23 H 0.070 0.930 24 C -0.010 4.010 25 N -0.931 5.931 26 Si 0.903 3.097 27 H -0.281 1.281 28 H -0.293 1.293 29 H -0.292 1.292 30 H 0.071 0.929 31 H 0.044 0.956 32 H 0.054 0.946 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.162 0.838 36 H 0.163 0.837 37 H 0.090 0.910 38 H 0.063 0.937 39 H 0.076 0.924 40 H 0.050 0.950 41 H 0.384 0.616 42 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.455 9.988 6.145 18.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.129 4.129 3 H 0.086 0.914 4 C -0.003 4.003 5 N -0.314 5.314 6 C 0.348 3.652 7 O -0.409 6.409 8 C -0.202 4.202 9 C 0.173 3.827 10 F -0.088 7.088 11 C -0.223 4.223 12 C 0.155 3.845 13 F -0.097 7.097 14 C -0.221 4.221 15 C 0.175 3.825 16 F -0.085 7.085 17 C -0.009 4.009 18 C -0.190 4.190 19 C 0.068 3.932 20 H 0.071 0.929 21 N -0.361 5.361 22 C -0.369 4.369 23 H 0.088 0.912 24 C -0.207 4.207 25 N -0.579 5.579 26 Si 0.735 3.265 27 H -0.206 1.206 28 H -0.220 1.220 29 H -0.220 1.220 30 H 0.090 0.910 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.105 0.895 34 H 0.099 0.901 35 H 0.180 0.820 36 H 0.181 0.819 37 H 0.109 0.891 38 H 0.081 0.919 39 H 0.095 0.905 40 H 0.069 0.931 41 H 0.219 0.781 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 14.129 10.165 6.472 18.570 hybrid contribution -0.008 -0.850 -0.732 1.122 sum 14.121 9.316 5.740 17.865 Atomic orbital electron populations 1.21663 0.93990 1.03269 1.00548 1.21718 0.96680 0.98922 0.95534 0.91446 1.21765 0.77539 1.02030 0.98988 1.48103 1.07447 1.58270 1.17613 1.17601 0.84941 0.79086 0.83618 1.90808 1.74126 1.45059 1.30866 1.20031 0.96277 0.95901 1.08023 1.16751 0.89216 0.82742 0.93942 1.91621 1.82695 1.49121 1.85338 1.20975 0.93100 1.00530 1.07647 1.16876 0.77502 0.93393 0.96745 1.91586 1.28362 1.96113 1.93604 1.21007 0.92256 1.02004 1.06880 1.16789 0.88352 0.83838 0.93501 1.91645 1.77745 1.57068 1.82071 1.21780 0.96046 0.99393 0.83686 1.22534 1.00656 0.98685 0.97164 1.20215 0.90608 0.87429 0.94929 0.92889 1.42488 1.78966 1.07685 1.06979 1.19259 1.37261 0.93871 0.86552 0.91171 1.24701 1.02206 0.97171 0.96577 1.69652 1.51660 1.13009 1.23625 0.86179 0.77312 0.79975 0.83057 1.20635 1.21982 1.21950 0.90970 0.93687 0.92694 0.89509 0.90100 0.82004 0.81933 0.89141 0.91857 0.90506 0.93146 0.78099 0.93544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 9.05 37.16 0.34 -1.82 16 2 C -0.11 -1.75 2.67 -90.50 -0.24 -2.00 16 3 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 4 C 0.12 2.00 5.42 -3.71 -0.02 1.98 16 5 N -0.58 -9.65 2.97 -174.03 -0.52 -10.16 16 6 C 0.56 9.41 6.42 -12.52 -0.08 9.33 16 7 O -0.53 -10.37 16.52 5.27 0.09 -10.28 16 8 C -0.20 -2.66 3.64 -104.85 -0.38 -3.05 16 9 C 0.19 2.23 7.13 -38.98 -0.28 1.95 16 10 F -0.11 -1.38 16.83 2.25 0.04 -1.34 16 11 C -0.20 -1.76 9.99 -39.50 -0.39 -2.15 16 12 C 0.17 1.50 7.30 -39.32 -0.29 1.21 16 13 F -0.12 -0.99 17.26 2.25 0.04 -0.95 16 14 C -0.20 -1.83 9.99 -39.50 -0.39 -2.23 16 15 C 0.20 2.36 7.29 -38.98 -0.28 2.08 16 16 F -0.11 -1.49 16.83 2.25 0.04 -1.45 16 17 C 0.11 1.81 6.08 -3.71 -0.02 1.79 16 18 C -0.15 -2.42 5.78 -26.61 -0.15 -2.58 16 19 C 0.18 3.25 2.53 -67.89 -0.17 3.08 16 20 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 21 N -0.72 -16.15 3.64 -53.39 -0.19 -16.34 16 22 C -0.24 -6.09 9.93 -15.06 -0.15 -6.24 16 23 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 24 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 25 N -0.93 -26.68 13.06 55.49 0.72 -25.95 16 26 Si 0.90 21.49 29.55 -169.99 -5.02 16.47 16 27 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 28 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 29 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 30 H 0.07 1.32 7.54 -51.93 -0.39 0.92 16 31 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.09 1.46 7.00 -51.93 -0.36 1.10 16 34 H 0.08 1.49 6.64 -51.93 -0.34 1.15 16 35 H 0.16 1.00 8.06 -52.49 -0.42 0.58 16 36 H 0.16 1.10 8.06 -52.49 -0.42 0.68 16 37 H 0.09 1.69 7.74 -51.93 -0.40 1.29 16 38 H 0.06 0.88 6.21 -51.93 -0.32 0.56 16 39 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 40 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.38 9.27 5.93 -40.82 -0.24 9.03 16 42 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 358.79 15.07 5.41 5.41 Total: -1.00 -29.58 358.79 -7.01 -36.59 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: -4.99 Total: 7.03 kcal Atomic # 6 Polarization: 3.61 SS G_CDS: -2.62 Total: 0.99 kcal Atomic # 7 Polarization: -52.48 SS G_CDS: 0.01 Total: -52.46 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: 0.09 Total: -10.28 kcal Atomic # 9 Polarization: -3.85 SS G_CDS: 0.11 Total: -3.74 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -29.58 -7.01 -36.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036161935.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.694 kcal (2) G-P(sol) polarization free energy of solvation -29.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds