Wall clock time and date at job start Wed Apr 1 2020 02:30:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.50063 * 2 1 4 4 C 1.53193 * 109.49757 * 239.93629 * 2 1 3 5 5 N 1.46927 * 108.77701 * 185.41697 * 4 2 1 6 6 C 1.34774 * 120.63141 * 233.63281 * 5 4 2 7 7 O 1.21568 * 119.99848 * 356.17748 * 6 5 4 8 8 C 1.47738 * 120.00333 * 176.18679 * 6 5 4 9 9 C 1.39625 * 120.09631 * 230.54738 * 8 6 5 10 10 C 1.38076 * 119.89539 * 179.76341 * 9 8 6 11 11 F 1.35098 * 119.95293 * 180.25294 * 10 9 8 12 12 C 1.38788 * 120.10003 * 0.51065 * 10 9 8 13 13 F 1.35095 * 119.90124 * 179.76508 * 12 10 9 14 14 C 1.38780 * 120.20174 * 359.74297 * 12 10 9 15 15 F 1.35098 * 119.95195 * 179.97438 * 14 12 10 16 16 C 1.38079 * 120.10174 * 359.97438 * 14 12 10 17 17 C 1.46926 * 118.74215 * 53.60383 * 5 4 2 18 18 C 1.53191 * 108.77514 * 306.39669 * 17 5 4 19 19 C 1.53041 * 109.31397 * 54.63307 * 18 17 5 20 20 H 1.09001 * 109.46066 * 178.61965 * 19 18 17 21 21 N 1.46496 * 109.46393 * 58.65263 * 19 18 17 22 22 C 1.36941 * 119.99663 * 84.99692 * 21 19 18 23 23 H 1.08000 * 120.00106 * 0.02562 * 22 21 19 24 24 C 1.38812 * 120.00009 * 180.02562 * 22 21 19 25 25 N 1.31621 * 119.99836 * 0.02562 * 24 22 21 26 26 Si 1.86795 * 120.00136 * 180.02562 * 24 22 21 27 27 H 1.48507 * 109.47320 * 59.99878 * 26 24 22 28 28 H 1.48503 * 109.47361 * 179.97438 * 26 24 22 29 29 H 1.48501 * 109.47420 * 300.00235 * 26 24 22 30 30 H 1.08995 * 109.47101 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46937 * 300.06607 * 1 2 3 32 32 H 1.09004 * 109.47250 * 60.06315 * 1 2 3 33 33 H 1.08995 * 109.59208 * 65.62777 * 4 2 1 34 34 H 1.09002 * 109.70422 * 305.26942 * 4 2 1 35 35 H 1.08006 * 120.05529 * 0.02562 * 9 8 6 36 36 H 1.08003 * 120.04849 * 180.02562 * 16 14 12 37 37 H 1.08993 * 109.59362 * 186.60753 * 17 5 4 38 38 H 1.08999 * 109.58390 * 66.17576 * 17 5 4 39 39 H 1.09004 * 109.50136 * 174.58088 * 18 17 5 40 40 H 1.08995 * 109.49826 * 294.68299 * 18 17 5 41 41 H 0.96996 * 120.00336 * 265.00571 * 21 19 18 42 42 H 0.97005 * 119.99632 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7234 -1.2498 5 7 3.5046 -0.8289 -1.1698 6 6 4.2812 -0.3850 -2.1780 7 8 3.7710 0.0443 -3.1945 8 6 5.7524 -0.4204 -2.0479 9 6 6.5070 0.7224 -2.3202 10 6 7.8814 0.6861 -2.1925 11 9 8.6122 1.7925 -2.4508 12 6 8.5136 -0.4869 -1.8044 13 9 9.8589 -0.5192 -1.6854 14 6 7.7680 -1.6266 -1.5378 15 9 8.3887 -2.7658 -1.1609 16 6 6.3927 -1.5980 -1.6572 17 6 4.1053 -1.4268 0.0303 18 6 3.5709 -0.6954 1.2658 19 6 2.0408 -0.7235 1.2481 20 1 1.6582 -0.2251 2.1388 21 7 1.5782 -2.1134 1.2301 22 6 1.4468 -2.8065 2.4039 23 1 1.6837 -2.3283 3.3428 24 6 1.0090 -4.1236 2.3869 25 7 0.7207 -4.7066 1.2425 26 14 0.8290 -5.0688 3.9879 27 1 -0.1502 -4.3766 4.8641 28 1 0.3487 -6.4441 3.6996 29 1 2.1446 -5.1369 4.6733 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5148 0.8894 32 1 -0.3634 0.5129 -0.8906 33 1 1.7638 -0.1574 -2.1390 34 1 1.6054 -1.7212 -1.3011 35 1 6.0162 1.6345 -2.6262 36 1 5.8132 -2.4854 -1.4491 37 1 5.1895 -1.3247 -0.0141 38 1 3.8374 -2.4819 0.0861 39 1 3.9333 -1.1904 2.1668 40 1 3.9159 0.3384 1.2541 41 1 1.3652 -2.5428 0.3869 42 1 0.4144 -5.6269 1.2307 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036190325.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:30:54 Heat of formation + Delta-G solvation = -122.588226 kcal Electronic energy + Delta-G solvation = -30451.229044 eV Core-core repulsion = 25789.425473 eV Total energy + Delta-G solvation = -4661.803571 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.130 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -50.10708 -49.50882 -48.78619 -40.74222 -38.75745 -37.61585 -34.50111 -33.03355 -31.56190 -31.12315 -31.03974 -29.27965 -26.61138 -25.50052 -23.94588 -23.72536 -23.40602 -21.78039 -20.49680 -18.83019 -18.39118 -18.20971 -17.89764 -17.41443 -17.14686 -16.67550 -16.20535 -15.93147 -15.79610 -15.34455 -15.24899 -15.05117 -14.70366 -14.64313 -14.47882 -14.08142 -13.86206 -13.42285 -13.35810 -12.99348 -12.82246 -12.58730 -12.46375 -12.24019 -12.07475 -11.62585 -11.44129 -11.28668 -10.95623 -10.88002 -10.61760 -10.59200 -10.28352 -10.01421 -9.94549 -9.63444 -9.37963 -9.26927 -8.99105 -8.44752 -7.05924 -5.85990 -3.14931 0.04163 0.31826 2.26974 2.69093 2.86805 3.08843 3.37636 3.43229 3.44088 3.75772 3.79084 3.98521 4.03138 4.43861 4.51573 4.85866 4.98035 5.06669 5.19930 5.25199 5.25889 5.33278 5.40572 5.47962 5.52976 5.61356 5.69867 5.80729 5.94042 5.96170 6.09244 6.11682 6.22182 6.27714 6.39957 6.47273 6.57825 6.65376 6.81337 6.88698 7.41293 7.62042 8.01843 8.32411 9.44318 9.99612 10.34637 11.36125 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.013270 B = 0.003346 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2109.456386 B = 8366.534805 C = 9708.549699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.108 4.108 3 H 0.067 0.933 4 C 0.119 3.881 5 N -0.587 5.587 6 C 0.557 3.443 7 O -0.534 6.534 8 C -0.067 4.067 9 C -0.089 4.089 10 C 0.096 3.904 11 F -0.116 7.116 12 C 0.047 3.953 13 F -0.114 7.114 14 C 0.099 3.901 15 F -0.113 7.113 16 C -0.105 4.105 17 C 0.100 3.900 18 C -0.150 4.150 19 C 0.178 3.822 20 H 0.053 0.947 21 N -0.718 5.718 22 C -0.241 4.241 23 H 0.069 0.931 24 C -0.009 4.009 25 N -0.932 5.932 26 Si 0.904 3.096 27 H -0.287 1.287 28 H -0.292 1.292 29 H -0.287 1.287 30 H 0.071 0.929 31 H 0.054 0.946 32 H 0.044 0.956 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.162 0.838 36 H 0.166 0.834 37 H 0.075 0.925 38 H 0.092 0.908 39 H 0.076 0.924 40 H 0.050 0.950 41 H 0.384 0.616 42 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.598 10.501 -6.226 16.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.128 4.128 3 H 0.085 0.915 4 C -0.003 4.003 5 N -0.317 5.317 6 C 0.344 3.656 7 O -0.412 6.412 8 C -0.071 4.071 9 C -0.109 4.109 10 C 0.076 3.924 11 F -0.094 7.094 12 C 0.026 3.974 13 F -0.093 7.093 14 C 0.078 3.922 15 F -0.091 7.091 16 C -0.124 4.124 17 C -0.021 4.021 18 C -0.191 4.191 19 C 0.067 3.933 20 H 0.071 0.929 21 N -0.361 5.361 22 C -0.372 4.372 23 H 0.087 0.913 24 C -0.205 4.205 25 N -0.580 5.580 26 Si 0.735 3.265 27 H -0.213 1.213 28 H -0.218 1.218 29 H -0.213 1.213 30 H 0.090 0.910 31 H 0.073 0.927 32 H 0.063 0.937 33 H 0.105 0.895 34 H 0.099 0.901 35 H 0.179 0.821 36 H 0.183 0.817 37 H 0.093 0.907 38 H 0.110 0.890 39 H 0.095 0.905 40 H 0.068 0.932 41 H 0.219 0.781 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 11.382 10.624 -6.567 16.898 hybrid contribution 0.514 -0.857 0.841 1.306 sum 11.896 9.766 -5.726 16.422 Atomic orbital electron populations 1.21665 0.94007 1.03306 1.00560 1.21717 0.96690 0.98867 0.95568 0.91482 1.21762 0.77513 1.02108 0.98918 1.48091 1.07477 1.58384 1.17791 1.17874 0.85288 0.78674 0.83788 1.90818 1.74294 1.47442 1.28695 1.19647 0.94801 0.93091 0.99553 1.21088 0.90389 1.00244 0.99130 1.17095 0.89375 0.82356 1.03586 1.91586 1.76840 1.49545 1.91448 1.17748 0.78377 0.93822 1.07481 1.91574 1.27306 1.96803 1.93573 1.17120 0.90352 0.81953 1.02741 1.91608 1.82474 1.46605 1.88447 1.21456 0.91849 1.00230 0.98896 1.22115 0.96877 0.99376 0.83767 1.22541 1.00586 0.98702 0.97315 1.20223 0.90681 0.87440 0.94926 0.92950 1.42463 1.79027 1.07653 1.06946 1.19165 1.37616 0.93878 0.86540 0.91283 1.24693 1.02076 0.97160 0.96594 1.69632 1.51484 1.13161 1.23708 0.86323 0.77791 0.79234 0.83119 1.21345 1.21778 1.21328 0.90956 0.92698 0.93688 0.89478 0.90093 0.82071 0.81676 0.90702 0.88999 0.90492 0.93154 0.78107 0.93420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 9.05 37.16 0.34 -1.68 16 2 C -0.11 -1.60 2.67 -90.50 -0.24 -1.84 16 3 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 4 C 0.12 1.78 5.40 -3.71 -0.02 1.76 16 5 N -0.59 -8.28 2.97 -173.92 -0.52 -8.80 16 6 C 0.56 7.76 7.23 -12.38 -0.09 7.67 16 7 O -0.53 -8.92 16.47 5.31 0.09 -8.83 16 8 C -0.07 -0.76 5.00 -104.98 -0.52 -1.28 16 9 C -0.09 -0.88 9.71 -39.12 -0.38 -1.26 16 10 C 0.10 0.98 7.29 -39.44 -0.29 0.69 16 11 F -0.12 -1.22 17.17 2.25 0.04 -1.18 16 12 C 0.05 0.51 7.32 -39.18 -0.29 0.22 16 13 F -0.11 -1.32 17.08 2.25 0.04 -1.29 16 14 C 0.10 1.05 7.29 -39.44 -0.29 0.76 16 15 F -0.11 -1.30 17.17 2.25 0.04 -1.26 16 16 C -0.10 -1.09 7.33 -39.12 -0.29 -1.38 16 17 C 0.10 1.40 5.12 -3.71 -0.02 1.38 16 18 C -0.15 -2.23 5.78 -26.61 -0.15 -2.38 16 19 C 0.18 3.02 2.53 -67.89 -0.17 2.85 16 20 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 21 N -0.72 -15.38 3.64 -53.38 -0.19 -15.58 16 22 C -0.24 -5.98 9.93 -15.06 -0.15 -6.13 16 23 H 0.07 1.68 7.83 -52.49 -0.41 1.27 16 24 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 25 N -0.93 -25.98 13.06 55.49 0.72 -25.26 16 26 Si 0.90 21.08 29.55 -169.99 -5.02 16.06 16 27 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 28 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 29 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 30 H 0.07 1.25 7.53 -51.93 -0.39 0.86 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.09 1.30 7.02 -51.93 -0.36 0.93 16 34 H 0.08 1.36 6.65 -51.93 -0.35 1.01 16 35 H 0.16 1.42 8.06 -52.48 -0.42 0.99 16 36 H 0.17 1.63 7.07 -52.48 -0.37 1.26 16 37 H 0.07 0.87 4.56 -51.93 -0.24 0.63 16 38 H 0.09 1.51 7.74 -51.93 -0.40 1.11 16 39 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.38 8.81 5.93 -40.82 -0.24 8.57 16 42 H 0.26 7.05 8.31 -40.82 -0.34 6.72 16 LS Contribution 355.09 15.07 5.35 5.35 Total: -1.00 -27.88 355.09 -6.97 -34.85 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -4.85 Total: 6.88 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: -2.66 Total: -0.95 kcal Atomic # 7 Polarization: -49.64 SS G_CDS: 0.01 Total: -49.63 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: 0.09 Total: -8.83 kcal Atomic # 9 Polarization: -3.84 SS G_CDS: 0.12 Total: -3.73 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -27.88 -6.97 -34.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036190325.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.740 kcal (2) G-P(sol) polarization free energy of solvation -27.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds