Wall clock time and date at job start Wed Apr 1 2020 02:16:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.69657 * 2 1 4 4 C 1.53184 * 109.58739 * 239.64857 * 2 1 3 5 5 C 1.53047 * 109.31379 * 185.57633 * 4 2 1 6 6 H 1.08999 * 109.45379 * 301.34177 * 5 4 2 7 7 N 1.46501 * 109.46048 * 181.38623 * 5 4 2 8 8 C 1.36932 * 120.00105 * 154.99855 * 7 5 4 9 9 H 1.08005 * 119.99784 * 359.97438 * 8 7 5 10 10 C 1.38810 * 120.00231 * 179.97438 * 8 7 5 11 11 N 1.31623 * 120.00085 * 180.02562 * 10 8 7 12 12 Si 1.86802 * 119.99847 * 359.97438 * 10 8 7 13 13 H 1.48503 * 109.46894 * 90.00336 * 12 10 8 14 14 H 1.48501 * 109.47300 * 209.99870 * 12 10 8 15 15 H 1.48493 * 109.47055 * 330.00291 * 12 10 8 16 16 C 1.53040 * 109.53858 * 61.36157 * 5 4 2 17 17 C 1.53630 * 109.23945 * 298.51454 * 16 5 4 18 18 N 1.46920 * 108.54201 * 54.85603 * 17 16 5 19 19 C 1.34781 * 120.62980 * 126.36824 * 18 17 16 20 20 O 1.21580 * 119.99979 * 184.68511 * 19 18 17 21 21 C 1.47572 * 119.99746 * 4.68607 * 19 18 17 22 22 C 1.39755 * 120.13151 * 39.60192 * 21 19 18 23 23 C 1.37923 * 119.87667 * 180.02562 * 22 21 19 24 24 F 1.35094 * 119.93062 * 179.97438 * 23 22 21 25 25 C 1.38952 * 120.14342 * 359.97438 * 23 22 21 26 26 F 1.35103 * 119.86340 * 180.02562 * 25 23 22 27 27 C 1.38449 * 120.26533 * 359.97438 * 25 23 22 28 28 C 1.38204 * 120.12484 * 0.02562 * 27 25 23 29 29 F 1.35097 * 120.07652 * 180.02562 * 28 27 25 30 30 H 1.09003 * 109.47506 * 303.90346 * 1 2 3 31 31 H 1.08996 * 109.47507 * 63.90689 * 1 2 3 32 32 H 1.09004 * 109.47027 * 183.90411 * 1 2 3 33 33 H 1.09004 * 109.49915 * 305.52332 * 4 2 1 34 34 H 1.09004 * 109.50668 * 65.59130 * 4 2 1 35 35 H 0.96998 * 119.99803 * 334.99689 * 7 5 4 36 36 H 0.96997 * 119.99668 * 180.02562 * 11 10 8 37 37 H 1.08998 * 109.49584 * 58.58780 * 16 5 4 38 38 H 1.09000 * 109.49764 * 178.68639 * 16 5 4 39 39 H 1.08996 * 109.73707 * 295.11766 * 17 16 5 40 40 H 1.08998 * 109.65901 * 174.55124 * 17 16 5 41 41 H 1.07991 * 120.06336 * 359.97438 * 22 21 19 42 42 H 1.08004 * 119.93505 * 179.74321 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8973 1.0262 0.0000 4 6 2.0435 -0.7292 -1.2454 5 6 3.5675 -0.8478 -1.1701 6 1 4.0060 0.1476 -1.0993 7 7 4.0652 -1.5155 -2.3754 8 6 5.3497 -1.2984 -2.7975 9 1 5.9957 -0.6346 -2.2421 10 6 5.8214 -1.9314 -3.9393 11 7 7.0562 -1.7232 -4.3447 12 14 4.7043 -3.0801 -4.8995 13 1 3.9697 -2.3067 -5.9328 14 1 5.5220 -4.1313 -5.5564 15 1 3.7331 -3.7151 -3.9730 16 6 3.9570 -1.6656 0.0635 17 6 3.4656 -0.9418 1.3264 18 7 2.0226 -0.6995 1.1944 19 6 1.1674 -1.1062 2.1536 20 8 -0.0309 -0.9765 1.9944 21 6 1.6857 -1.7088 3.3969 22 6 2.8356 -1.1924 4.0005 23 6 3.3157 -1.7600 5.1622 24 9 4.4274 -1.2620 5.7464 25 6 2.6584 -2.8429 5.7332 26 9 3.1334 -3.3942 6.8715 27 6 1.5183 -3.3586 5.1408 28 6 1.0275 -2.7984 3.9766 29 9 -0.0854 -3.3019 3.3996 30 1 -0.3634 0.5732 0.8529 31 1 -0.3634 0.4520 -0.9229 32 1 -0.3633 -1.0253 0.0700 33 1 1.6030 -1.7253 -1.2913 34 1 1.7655 -0.1670 -2.1369 35 1 3.4849 -2.1114 -2.8745 36 1 7.3857 -2.1652 -5.1427 37 1 3.4984 -2.6527 0.0052 38 1 5.0413 -1.7694 0.1036 39 1 3.9877 0.0091 1.4323 40 1 3.6533 -1.5635 2.2018 41 1 3.3477 -0.3510 3.5578 42 1 1.0140 -4.2031 5.5869 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044724449.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:16:53 Heat of formation + Delta-G solvation = -101.535454 kcal Electronic energy + Delta-G solvation = -30410.470723 eV Core-core repulsion = 25749.580068 eV Total energy + Delta-G solvation = -4660.890655 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.130 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -50.02634 -49.42276 -49.08129 -40.97794 -38.84655 -37.54522 -34.82055 -33.42387 -32.04429 -31.30232 -30.61195 -29.80080 -27.31378 -25.07165 -24.18540 -23.94657 -22.74449 -21.92768 -20.43032 -19.79475 -18.73596 -18.43540 -17.88961 -17.58119 -17.04145 -16.80764 -16.16246 -15.94327 -15.81607 -15.51549 -15.29259 -15.10436 -14.96855 -14.74683 -14.55476 -14.23067 -13.86392 -13.63683 -13.49220 -13.12230 -12.79765 -12.62726 -12.51942 -12.36596 -12.19370 -12.06492 -11.94966 -11.53456 -11.07242 -11.02502 -10.96250 -10.63228 -10.35082 -10.01405 -9.74290 -9.65885 -9.31754 -9.15642 -8.99190 -8.65136 -7.35639 -5.83835 -3.20160 -0.08933 0.21580 2.14950 2.59548 2.86653 3.03689 3.33155 3.36427 3.40991 3.41617 3.76034 3.78916 3.98064 4.32248 4.53291 4.73533 4.88097 4.88624 4.93091 5.02852 5.05327 5.12327 5.22930 5.30330 5.31099 5.37510 5.49092 5.61698 5.70806 5.82387 5.92515 5.96976 6.00487 6.15129 6.22673 6.27580 6.33289 6.57897 6.69680 6.84639 7.22475 7.90969 7.92047 8.35149 9.13011 9.85860 10.05187 11.34240 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.013279 B = 0.003174 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.049897 B = 8819.781490 C = 9760.300358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.149 3.851 3 H 0.078 0.922 4 C -0.140 4.140 5 C 0.183 3.817 6 H 0.058 0.942 7 N -0.747 5.747 8 C -0.247 4.247 9 H 0.091 0.909 10 C 0.007 3.993 11 N -0.932 5.932 12 Si 0.883 3.117 13 H -0.284 1.284 14 H -0.291 1.291 15 H -0.277 1.277 16 C -0.151 4.151 17 C 0.092 3.908 18 N -0.592 5.592 19 C 0.560 3.440 20 O -0.516 6.516 21 C -0.146 4.146 22 C -0.068 4.068 23 C 0.054 3.946 24 F -0.118 7.118 25 C 0.121 3.879 26 F -0.115 7.115 27 C -0.172 4.172 28 C 0.176 3.824 29 F -0.106 7.106 30 H 0.069 0.931 31 H 0.046 0.954 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.079 0.921 35 H 0.361 0.639 36 H 0.260 0.740 37 H 0.060 0.940 38 H 0.083 0.917 39 H 0.077 0.923 40 H 0.084 0.916 41 H 0.168 0.832 42 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.793 0.518 20.784 23.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.046 3.954 3 H 0.096 0.904 4 C -0.179 4.179 5 C 0.073 3.927 6 H 0.076 0.924 7 N -0.389 5.389 8 C -0.376 4.376 9 H 0.109 0.891 10 C -0.189 4.189 11 N -0.580 5.580 12 Si 0.714 3.286 13 H -0.210 1.210 14 H -0.217 1.217 15 H -0.204 1.204 16 C -0.192 4.192 17 C -0.030 4.030 18 N -0.325 5.325 19 C 0.347 3.653 20 O -0.393 6.393 21 C -0.151 4.151 22 C -0.087 4.087 23 C 0.034 3.966 24 F -0.096 7.096 25 C 0.100 3.900 26 F -0.093 7.093 27 C -0.191 4.191 28 C 0.155 3.845 29 F -0.084 7.084 30 H 0.088 0.912 31 H 0.065 0.935 32 H 0.090 0.910 33 H 0.083 0.917 34 H 0.097 0.903 35 H 0.194 0.806 36 H 0.070 0.930 37 H 0.079 0.921 38 H 0.101 0.899 39 H 0.095 0.905 40 H 0.102 0.898 41 H 0.185 0.815 42 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -12.149 0.661 20.651 23.969 hybrid contribution -0.310 -1.150 -0.507 1.295 sum -12.459 -0.489 20.144 23.691 Atomic orbital electron populations 1.22230 0.92571 1.03840 1.00793 1.21376 0.95618 0.95140 0.83218 0.90411 1.22361 0.97535 1.01116 0.96891 1.20146 0.90755 0.95409 0.86352 0.92403 1.42787 1.13205 1.54875 1.28046 1.19052 0.87666 1.23479 1.07441 0.89144 1.24669 0.96067 1.00005 0.98189 1.69698 1.15056 1.47104 1.26109 0.86573 0.80349 0.81301 0.80406 1.21027 1.21731 1.20366 1.22742 1.02334 0.99809 0.94338 1.22401 0.79199 1.01079 1.00362 1.48130 1.07692 1.56704 1.19946 1.17771 0.86256 0.78851 0.82444 1.90909 1.14695 1.55011 1.78675 1.20065 0.97315 0.98544 0.99147 1.21296 0.94217 1.00437 0.92741 1.17406 0.87736 0.96376 0.95088 1.91593 1.48592 1.86295 1.83159 1.17417 0.94174 0.93460 0.84951 1.91595 1.87312 1.84026 1.46373 1.20913 0.97426 1.04164 0.96633 1.17150 0.84057 0.92158 0.91127 1.91636 1.48121 1.85515 1.83138 0.91214 0.93513 0.91020 0.91744 0.90258 0.80603 0.92995 0.92125 0.89892 0.90526 0.89801 0.81484 0.81613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 7.59 37.16 0.28 -1.45 16 2 C 0.15 1.86 3.49 -67.61 -0.24 1.62 16 3 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 4 C -0.14 -2.03 4.84 -26.61 -0.13 -2.16 16 5 C 0.18 3.14 2.73 -67.89 -0.19 2.96 16 6 H 0.06 1.02 8.08 -51.93 -0.42 0.60 16 7 N -0.75 -16.58 4.92 -53.38 -0.26 -16.84 16 8 C -0.25 -6.59 10.41 -15.06 -0.16 -6.75 16 9 H 0.09 2.57 8.06 -52.48 -0.42 2.15 16 10 C 0.01 0.19 5.50 -17.43 -0.10 0.10 16 11 N -0.93 -28.48 13.97 55.49 0.78 -27.71 16 12 Si 0.88 21.58 27.73 -169.99 -4.71 16.87 16 13 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 14 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 15 H -0.28 -6.42 6.52 56.52 0.37 -6.05 16 16 C -0.15 -2.26 5.68 -26.38 -0.15 -2.41 16 17 C 0.09 1.02 4.90 -3.49 -0.02 1.00 16 18 N -0.59 -7.12 2.97 -166.18 -0.49 -7.61 16 19 C 0.56 7.05 7.11 -12.45 -0.09 6.97 16 20 O -0.52 -7.72 11.64 5.29 0.06 -7.66 16 21 C -0.15 -1.50 5.18 -104.91 -0.54 -2.05 16 22 C -0.07 -0.57 7.32 -39.13 -0.29 -0.85 16 23 C 0.05 0.47 7.29 -39.43 -0.29 0.18 16 24 F -0.12 -1.12 17.17 2.25 0.04 -1.09 16 25 C 0.12 1.01 7.31 -39.24 -0.29 0.72 16 26 F -0.11 -1.03 17.17 2.25 0.04 -0.99 16 27 C -0.17 -1.33 9.99 -39.52 -0.39 -1.72 16 28 C 0.18 1.75 7.24 -38.98 -0.28 1.47 16 29 F -0.11 -1.25 16.23 2.25 0.04 -1.22 16 30 H 0.07 0.91 6.75 -51.93 -0.35 0.56 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.07 1.03 6.74 -51.93 -0.35 0.68 16 33 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 35 H 0.36 8.05 5.66 -40.82 -0.23 7.81 16 36 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 37 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 39 H 0.08 0.73 8.11 -51.93 -0.42 0.31 16 40 H 0.08 0.79 4.61 -51.93 -0.24 0.55 16 41 H 0.17 1.14 6.45 -52.49 -0.34 0.80 16 42 H 0.17 0.89 8.06 -52.48 -0.42 0.47 16 LS Contribution 348.79 15.07 5.26 5.26 Total: -1.00 -31.21 348.79 -7.02 -38.23 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -4.90 Total: 5.13 kcal Atomic # 6 Polarization: 0.48 SS G_CDS: -2.86 Total: -2.38 kcal Atomic # 7 Polarization: -52.18 SS G_CDS: 0.02 Total: -52.16 kcal Atomic # 8 Polarization: -7.72 SS G_CDS: 0.06 Total: -7.66 kcal Atomic # 9 Polarization: -3.41 SS G_CDS: 0.11 Total: -3.29 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.71 Total: 16.87 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.21 -7.02 -38.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044724449.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.301 kcal (2) G-P(sol) polarization free energy of solvation -31.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds