Wall clock time and date at job start Wed Apr 1 2020 02:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.58779 * 2 1 4 4 C 1.53191 * 109.58911 * 239.71904 * 2 1 3 5 5 C 1.53045 * 109.30922 * 294.85068 * 4 2 1 6 6 H 1.08994 * 109.46260 * 58.64364 * 5 4 2 7 7 N 1.46505 * 109.45705 * 178.61571 * 5 4 2 8 8 C 1.36941 * 119.99817 * 205.02736 * 7 5 4 9 9 H 1.08003 * 119.99679 * 359.97438 * 8 7 5 10 10 C 1.38809 * 120.00021 * 179.97438 * 8 7 5 11 11 N 1.31621 * 119.99716 * 180.02562 * 10 8 7 12 12 Si 1.86801 * 119.99891 * 359.97438 * 10 8 7 13 13 H 1.48500 * 109.46833 * 90.00656 * 12 10 8 14 14 H 1.48494 * 109.47451 * 330.00374 * 12 10 8 15 15 H 1.48500 * 109.47075 * 209.99811 * 12 10 8 16 16 C 1.53038 * 109.52734 * 298.62528 * 5 4 2 17 17 C 1.53191 * 109.31258 * 61.38496 * 16 5 4 18 18 N 1.46921 * 109.58651 * 120.42698 * 2 1 3 19 19 C 1.34779 * 120.63386 * 246.19968 * 18 2 1 20 20 O 1.21582 * 119.99606 * 354.19401 * 19 18 2 21 21 C 1.47579 * 120.00063 * 174.18670 * 19 18 2 22 22 C 1.39736 * 120.13639 * 306.18089 * 21 19 18 23 23 C 1.37756 * 119.94531 * 179.76320 * 22 21 19 24 24 C 1.38709 * 120.21205 * 0.51227 * 23 22 21 25 25 F 1.35104 * 119.86837 * 179.71824 * 24 23 22 26 26 C 1.38669 * 120.26891 * 359.74223 * 24 23 22 27 27 F 1.35098 * 119.97692 * 179.97438 * 26 24 23 28 28 C 1.38385 * 120.04876 * 359.97438 * 26 24 23 29 29 F 1.35103 * 120.10614 * 180.02562 * 28 26 24 30 30 H 1.08997 * 109.46995 * 180.27795 * 1 2 3 31 31 H 1.08998 * 109.47107 * 300.28722 * 1 2 3 32 32 H 1.09006 * 109.46945 * 60.27822 * 1 2 3 33 33 H 1.08991 * 109.50067 * 174.89778 * 4 2 1 34 34 H 1.09004 * 109.49753 * 54.79476 * 4 2 1 35 35 H 0.96995 * 119.99980 * 25.02285 * 7 5 4 36 36 H 0.97001 * 119.99724 * 180.02562 * 11 10 8 37 37 H 1.08991 * 109.49842 * 181.32827 * 16 5 4 38 38 H 1.09007 * 109.49792 * 301.42161 * 16 5 4 39 39 H 1.09004 * 109.58565 * 185.56622 * 17 16 5 40 40 H 1.09002 * 109.71251 * 65.20282 * 17 16 5 41 41 H 1.07998 * 120.02703 * 359.97438 * 22 21 19 42 42 H 1.07993 * 119.89245 * 180.25233 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7277 -1.2463 5 6 1.6414 -2.2026 -1.1729 6 1 0.5566 -2.2801 -1.1021 7 7 2.1024 -2.8947 -2.3791 8 6 1.4647 -4.0300 -2.8030 9 1 0.6221 -4.4153 -2.2478 10 6 1.9011 -4.6855 -3.9460 11 7 1.2877 -5.7765 -4.3537 12 14 3.3578 -4.0186 -4.9065 13 1 4.6116 -4.6190 -4.3842 14 1 3.4158 -2.5424 -4.7564 15 1 3.2042 -4.3646 -6.3424 16 6 2.2802 -2.8463 0.0598 17 6 1.7691 -2.1427 1.3210 18 7 2.0225 -0.7010 1.1936 19 6 2.6937 -0.0343 2.1536 20 8 2.9889 1.1336 1.9894 21 6 3.0700 -0.7219 3.4040 22 6 2.0978 -1.3775 4.1640 23 6 2.4542 -2.0222 5.3281 24 6 3.7741 -2.0140 5.7545 25 9 4.1150 -2.6438 6.9002 26 6 4.7452 -1.3617 5.0099 27 9 6.0288 -1.3570 5.4310 28 6 4.4003 -0.7155 3.8358 29 9 5.3455 -0.0800 3.1092 30 1 -0.3633 -1.0276 0.0050 31 1 -0.3633 0.5183 0.8874 32 1 -0.3633 0.5095 -0.8925 33 1 3.1297 -0.6487 -1.2921 34 1 1.6075 -0.2757 -2.1372 35 1 2.8593 -2.5488 -2.8774 36 1 1.5929 -6.2348 -5.1523 37 1 2.0127 -3.9021 0.0987 38 1 3.3642 -2.7470 0.0016 39 1 2.2944 -2.5303 2.1939 40 1 0.6988 -2.3172 1.4312 41 1 1.0684 -1.3816 3.8374 42 1 1.7029 -2.5321 5.9127 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044724607.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:17:58 Heat of formation + Delta-G solvation = -120.543993 kcal Electronic energy + Delta-G solvation = -30375.989090 eV Core-core repulsion = 25714.274164 eV Total energy + Delta-G solvation = -4661.714927 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.130 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.17146 -49.59559 -48.84081 -40.83036 -38.92934 -37.68240 -34.82492 -32.97827 -31.95335 -31.18367 -30.95775 -29.85415 -27.57057 -25.10026 -24.06732 -23.81923 -22.96673 -21.91239 -20.84792 -19.15612 -18.66979 -18.46303 -18.13715 -17.48514 -17.23060 -16.80037 -16.42170 -16.03707 -15.84408 -15.35067 -15.24326 -15.06747 -14.97191 -14.73889 -14.34968 -14.13124 -13.84163 -13.75914 -13.49636 -13.08751 -12.97588 -12.66879 -12.61240 -12.38194 -12.32742 -12.09138 -11.89258 -11.53007 -11.11442 -11.03376 -10.94276 -10.62641 -10.29363 -10.16377 -9.83277 -9.65439 -9.47665 -9.40831 -8.99240 -8.74892 -7.35521 -5.84110 -3.20272 -0.05123 0.20180 2.16001 2.48319 2.80197 2.90999 3.33355 3.36950 3.41955 3.61855 3.70517 3.84830 3.94871 4.17286 4.53389 4.72455 4.84182 4.93884 4.97583 5.04835 5.11107 5.17971 5.21620 5.28696 5.33152 5.41303 5.45317 5.56509 5.62540 5.70547 5.87621 5.95251 5.98720 6.08470 6.14530 6.26065 6.28295 6.42085 6.69488 6.84891 7.20124 7.86262 7.90696 8.34940 9.12915 9.85937 10.05239 11.33959 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.014131 B = 0.003043 C = 0.002889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.976045 B = 9200.277077 C = 9690.683098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.142 3.858 3 H 0.099 0.901 4 C -0.138 4.138 5 C 0.183 3.817 6 H 0.061 0.939 7 N -0.748 5.748 8 C -0.246 4.246 9 H 0.091 0.909 10 C 0.007 3.993 11 N -0.932 5.932 12 Si 0.883 3.117 13 H -0.284 1.284 14 H -0.277 1.277 15 H -0.291 1.291 16 C -0.152 4.152 17 C 0.100 3.900 18 N -0.590 5.590 19 C 0.563 3.437 20 O -0.525 6.525 21 C -0.140 4.140 22 C -0.038 4.038 23 C -0.137 4.137 24 C 0.116 3.884 25 F -0.115 7.115 26 C 0.029 3.971 27 F -0.113 7.113 28 C 0.144 3.856 29 F -0.103 7.103 30 H 0.068 0.932 31 H 0.054 0.946 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.079 0.921 35 H 0.361 0.639 36 H 0.260 0.740 37 H 0.083 0.917 38 H 0.059 0.941 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.160 0.840 42 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.036 9.906 21.034 23.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.040 3.960 3 H 0.117 0.883 4 C -0.177 4.177 5 C 0.074 3.926 6 H 0.079 0.921 7 N -0.390 5.390 8 C -0.376 4.376 9 H 0.108 0.892 10 C -0.189 4.189 11 N -0.580 5.580 12 Si 0.713 3.287 13 H -0.211 1.211 14 H -0.203 1.203 15 H -0.217 1.217 16 C -0.193 4.193 17 C -0.022 4.022 18 N -0.322 5.322 19 C 0.349 3.651 20 O -0.402 6.402 21 C -0.144 4.144 22 C -0.057 4.057 23 C -0.156 4.156 24 C 0.096 3.904 25 F -0.093 7.093 26 C 0.008 3.992 27 F -0.092 7.092 28 C 0.122 3.878 29 F -0.081 7.081 30 H 0.087 0.913 31 H 0.073 0.927 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.098 0.902 35 H 0.194 0.806 36 H 0.070 0.930 37 H 0.101 0.899 38 H 0.078 0.922 39 H 0.097 0.903 40 H 0.094 0.906 41 H 0.177 0.823 42 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 0.125 10.320 20.890 23.301 hybrid contribution 1.719 0.148 -0.579 1.820 sum 1.844 10.469 20.312 22.925 Atomic orbital electron populations 1.22164 0.94451 1.03101 1.02257 1.21251 0.94276 0.97149 0.83353 0.88317 1.22272 1.01449 0.97317 0.96702 1.20174 0.97438 0.88706 0.86305 0.92085 1.42798 1.37758 1.30521 1.27891 1.19044 1.11436 0.99658 1.07440 0.89150 1.24663 0.98905 0.97200 0.98147 1.69697 1.42648 1.19535 1.26108 0.86578 0.83601 0.78542 0.79956 1.21111 1.20301 1.21720 1.22659 1.01162 1.01034 0.94470 1.22038 1.01386 0.78774 1.00037 1.48183 1.54341 1.09767 1.19917 1.17760 0.78513 0.86263 0.82590 1.90834 1.53899 1.16137 1.79341 1.20007 0.91980 1.03461 0.98981 1.21150 0.99982 0.92232 0.92314 1.21108 0.93984 1.02318 0.98198 1.17554 0.92715 0.95923 0.84243 1.91594 1.92824 1.79177 1.45723 1.17397 0.80445 1.05691 0.95710 1.91589 1.33272 1.94988 1.89303 1.17247 0.86079 0.95023 0.89414 1.91638 1.62495 1.78484 1.75484 0.91337 0.92675 0.90997 0.91815 0.90224 0.80623 0.93002 0.89870 0.92210 0.90342 0.90636 0.82271 0.81993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.69 9.02 37.16 0.34 -1.35 16 2 C 0.14 1.77 3.21 -67.60 -0.22 1.55 16 3 H 0.10 1.31 7.00 -51.93 -0.36 0.94 16 4 C -0.14 -2.01 5.02 -26.61 -0.13 -2.15 16 5 C 0.18 3.10 2.52 -67.88 -0.17 2.93 16 6 H 0.06 1.04 6.44 -51.93 -0.33 0.71 16 7 N -0.75 -16.47 4.92 -53.38 -0.26 -16.74 16 8 C -0.25 -6.52 10.41 -15.06 -0.16 -6.68 16 9 H 0.09 2.54 8.06 -52.48 -0.42 2.12 16 10 C 0.01 0.20 5.50 -17.43 -0.10 0.10 16 11 N -0.93 -28.35 13.97 55.49 0.78 -27.57 16 12 Si 0.88 21.58 27.73 -169.99 -4.71 16.86 16 13 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 14 H -0.28 -6.38 6.52 56.52 0.37 -6.01 16 15 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 16 C -0.15 -2.25 5.66 -26.61 -0.15 -2.40 16 17 C 0.10 1.08 5.14 -3.71 -0.02 1.06 16 18 N -0.59 -7.06 2.68 -166.42 -0.45 -7.50 16 19 C 0.56 7.34 6.89 -12.45 -0.09 7.25 16 20 O -0.53 -8.65 16.26 5.29 0.09 -8.56 16 21 C -0.14 -1.46 4.61 -104.92 -0.48 -1.95 16 22 C -0.04 -0.26 7.77 -39.20 -0.30 -0.56 16 23 C -0.14 -0.80 10.00 -39.58 -0.40 -1.19 16 24 C 0.12 0.97 7.31 -39.25 -0.29 0.69 16 25 F -0.11 -1.03 17.17 2.25 0.04 -0.99 16 26 C 0.03 0.30 7.30 -39.37 -0.29 0.02 16 27 F -0.11 -1.33 17.09 2.25 0.04 -1.29 16 28 C 0.14 1.67 7.27 -38.92 -0.28 1.39 16 29 F -0.10 -1.45 16.55 2.25 0.04 -1.41 16 30 H 0.07 0.73 5.72 -51.93 -0.30 0.43 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.36 8.03 5.66 -40.82 -0.23 7.80 16 36 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 37 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 38 H 0.06 0.95 8.14 -51.92 -0.42 0.53 16 39 H 0.08 0.71 5.38 -51.93 -0.28 0.43 16 40 H 0.08 0.68 7.49 -51.93 -0.39 0.29 16 41 H 0.16 0.69 7.75 -52.49 -0.41 0.29 16 42 H 0.16 0.46 8.06 -52.49 -0.42 0.04 16 LS Contribution 353.49 15.07 5.33 5.33 Total: -1.00 -32.50 353.49 -6.71 -39.21 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -4.85 Total: 3.97 kcal Atomic # 6 Polarization: 1.43 SS G_CDS: -2.74 Total: -1.30 kcal Atomic # 7 Polarization: -51.88 SS G_CDS: 0.07 Total: -51.82 kcal Atomic # 8 Polarization: -8.65 SS G_CDS: 0.09 Total: -8.56 kcal Atomic # 9 Polarization: -3.81 SS G_CDS: 0.11 Total: -3.69 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.71 Total: 16.86 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.50 -6.71 -39.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044724607.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.331 kcal (2) G-P(sol) polarization free energy of solvation -32.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds