Wall clock time and date at job start Wed Apr 1 2020 02:17:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.58779 * 2 1 4 4 C 1.53191 * 109.58911 * 239.71904 * 2 1 3 5 5 C 1.53045 * 109.30922 * 294.85068 * 4 2 1 6 6 H 1.08994 * 109.46260 * 58.64364 * 5 4 2 7 7 N 1.46505 * 109.45705 * 178.61571 * 5 4 2 8 8 C 1.36941 * 119.99817 * 205.02736 * 7 5 4 9 9 H 1.08003 * 119.99679 * 359.97438 * 8 7 5 10 10 C 1.38809 * 120.00021 * 179.97438 * 8 7 5 11 11 N 1.31621 * 119.99716 * 180.02562 * 10 8 7 12 12 Si 1.86801 * 119.99891 * 359.97438 * 10 8 7 13 13 H 1.48500 * 109.46833 * 90.00656 * 12 10 8 14 14 H 1.48494 * 109.47451 * 330.00374 * 12 10 8 15 15 H 1.48500 * 109.47075 * 209.99811 * 12 10 8 16 16 C 1.53038 * 109.52734 * 298.62528 * 5 4 2 17 17 C 1.53191 * 109.31258 * 61.38496 * 16 5 4 18 18 N 1.46921 * 109.58651 * 120.42698 * 2 1 3 19 19 C 1.34779 * 120.63386 * 246.19968 * 18 2 1 20 20 O 1.21582 * 119.99606 * 354.19401 * 19 18 2 21 21 C 1.47579 * 120.00063 * 174.18670 * 19 18 2 22 22 C 1.39736 * 120.13639 * 306.18089 * 21 19 18 23 23 C 1.37756 * 119.94531 * 179.76320 * 22 21 19 24 24 C 1.38709 * 120.21205 * 0.51227 * 23 22 21 25 25 F 1.35104 * 119.86837 * 179.71824 * 24 23 22 26 26 C 1.38669 * 120.26891 * 359.74223 * 24 23 22 27 27 F 1.35098 * 119.97692 * 179.97438 * 26 24 23 28 28 C 1.38385 * 120.04876 * 359.97438 * 26 24 23 29 29 F 1.35103 * 120.10614 * 180.02562 * 28 26 24 30 30 H 1.08997 * 109.46995 * 180.27795 * 1 2 3 31 31 H 1.08998 * 109.47107 * 300.28722 * 1 2 3 32 32 H 1.09006 * 109.46945 * 60.27822 * 1 2 3 33 33 H 1.08991 * 109.50067 * 174.89778 * 4 2 1 34 34 H 1.09004 * 109.49753 * 54.79476 * 4 2 1 35 35 H 0.96995 * 119.99980 * 25.02285 * 7 5 4 36 36 H 0.97001 * 119.99724 * 180.02562 * 11 10 8 37 37 H 1.08991 * 109.49842 * 181.32827 * 16 5 4 38 38 H 1.09007 * 109.49792 * 301.42161 * 16 5 4 39 39 H 1.09004 * 109.58565 * 185.56622 * 17 16 5 40 40 H 1.09002 * 109.71251 * 65.20282 * 17 16 5 41 41 H 1.07998 * 120.02703 * 359.97438 * 22 21 19 42 42 H 1.07993 * 119.89245 * 180.25233 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7277 -1.2463 5 6 1.6414 -2.2026 -1.1729 6 1 0.5566 -2.2801 -1.1021 7 7 2.1024 -2.8947 -2.3791 8 6 1.4647 -4.0300 -2.8030 9 1 0.6221 -4.4153 -2.2478 10 6 1.9011 -4.6855 -3.9460 11 7 1.2877 -5.7765 -4.3537 12 14 3.3578 -4.0186 -4.9065 13 1 4.6116 -4.6190 -4.3842 14 1 3.4158 -2.5424 -4.7564 15 1 3.2042 -4.3646 -6.3424 16 6 2.2802 -2.8463 0.0598 17 6 1.7691 -2.1427 1.3210 18 7 2.0225 -0.7010 1.1936 19 6 2.6937 -0.0343 2.1536 20 8 2.9889 1.1336 1.9894 21 6 3.0700 -0.7219 3.4040 22 6 2.0978 -1.3775 4.1640 23 6 2.4542 -2.0222 5.3281 24 6 3.7741 -2.0140 5.7545 25 9 4.1150 -2.6438 6.9002 26 6 4.7452 -1.3617 5.0099 27 9 6.0288 -1.3570 5.4310 28 6 4.4003 -0.7155 3.8358 29 9 5.3455 -0.0800 3.1092 30 1 -0.3633 -1.0276 0.0050 31 1 -0.3633 0.5183 0.8874 32 1 -0.3633 0.5095 -0.8925 33 1 3.1297 -0.6487 -1.2921 34 1 1.6075 -0.2757 -2.1372 35 1 2.8593 -2.5488 -2.8774 36 1 1.5929 -6.2348 -5.1523 37 1 2.0127 -3.9021 0.0987 38 1 3.3642 -2.7470 0.0016 39 1 2.2944 -2.5303 2.1939 40 1 0.6988 -2.3172 1.4312 41 1 1.0684 -1.3816 3.8374 42 1 1.7029 -2.5321 5.9127 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044724607.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:17:57 Heat of formation + Delta-G solvation = -140.639431 kcal Electronic energy + Delta-G solvation = -30376.860494 eV Core-core repulsion = 25714.274164 eV Total energy + Delta-G solvation = -4662.586330 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.130 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -50.97501 -50.39622 -49.66246 -41.79452 -39.77376 -38.79722 -36.39002 -34.15806 -33.56893 -31.91825 -31.84069 -31.29306 -28.68540 -26.13871 -25.35623 -24.61869 -24.16415 -23.08403 -22.05056 -20.32302 -19.67653 -19.34315 -19.16021 -18.78336 -18.09875 -17.74407 -17.33144 -16.87043 -16.81218 -16.64631 -16.18696 -16.10214 -15.86504 -15.67156 -15.59648 -15.31527 -15.14193 -14.87926 -14.61419 -14.38720 -14.12668 -14.00478 -13.44002 -13.39654 -13.17156 -13.05433 -12.99014 -12.91939 -12.65690 -12.43065 -12.13808 -12.01152 -11.99146 -11.77606 -11.22621 -11.09871 -10.90865 -10.18373 -10.13267 -9.77563 -9.28585 -7.99996 -5.31979 -0.75309 -0.47553 1.26680 1.38694 1.39426 1.46692 1.65419 2.02735 2.16154 2.49348 2.91660 2.94456 3.05358 3.32301 3.35223 3.46565 3.56182 3.80374 3.95936 4.06784 4.15967 4.23161 4.28398 4.33449 4.54152 4.55805 4.61405 4.63758 4.67420 4.75712 4.77558 4.79013 5.01993 5.06694 5.08018 5.24406 5.34421 5.35786 5.50743 5.59969 5.81718 6.22475 6.24747 6.88139 7.10544 7.88003 8.04723 9.21233 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.014131 B = 0.003043 C = 0.002889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.976045 B = 9200.277077 C = 9690.683098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.146 3.854 3 H 0.090 0.910 4 C -0.131 4.131 5 C 0.177 3.823 6 H 0.065 0.935 7 N -0.755 5.755 8 C -0.219 4.219 9 H 0.068 0.932 10 C -0.061 4.061 11 N -0.982 5.982 12 Si 0.943 3.057 13 H -0.285 1.285 14 H -0.256 1.256 15 H -0.299 1.299 16 C -0.147 4.147 17 C 0.107 3.893 18 N -0.586 5.586 19 C 0.563 3.437 20 O -0.567 6.567 21 C -0.151 4.151 22 C -0.020 4.020 23 C -0.107 4.107 24 C 0.119 3.881 25 F -0.117 7.117 26 C 0.012 3.988 27 F -0.128 7.128 28 C 0.117 3.883 29 F -0.129 7.129 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.050 0.950 34 H 0.080 0.920 35 H 0.360 0.640 36 H 0.256 0.744 37 H 0.070 0.930 38 H 0.044 0.956 39 H 0.102 0.898 40 H 0.107 0.893 41 H 0.196 0.804 42 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.499 10.378 23.197 25.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.043 3.957 3 H 0.108 0.892 4 C -0.170 4.170 5 C 0.069 3.931 6 H 0.083 0.917 7 N -0.397 5.397 8 C -0.350 4.350 9 H 0.086 0.914 10 C -0.252 4.252 11 N -0.633 5.633 12 Si 0.772 3.228 13 H -0.212 1.212 14 H -0.181 1.181 15 H -0.226 1.226 16 C -0.187 4.187 17 C -0.015 4.015 18 N -0.317 5.317 19 C 0.351 3.649 20 O -0.447 6.447 21 C -0.155 4.155 22 C -0.039 4.039 23 C -0.125 4.125 24 C 0.098 3.902 25 F -0.096 7.096 26 C -0.009 4.009 27 F -0.107 7.107 28 C 0.096 3.904 29 F -0.107 7.107 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.094 0.906 33 H 0.069 0.931 34 H 0.099 0.901 35 H 0.193 0.807 36 H 0.065 0.935 37 H 0.088 0.912 38 H 0.063 0.937 39 H 0.121 0.879 40 H 0.125 0.875 41 H 0.213 0.787 42 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -1.410 10.828 23.104 25.554 hybrid contribution 2.131 0.003 -1.135 2.414 sum 0.721 10.831 21.969 24.505 Atomic orbital electron populations 1.22111 0.92345 1.03460 1.03327 1.21179 0.95773 0.96301 0.82467 0.89195 1.22167 1.00696 0.95871 0.98226 1.20451 0.97715 0.89752 0.85154 0.91719 1.42907 1.37507 1.29634 1.29640 1.19054 1.09867 0.99976 1.06089 0.91375 1.25355 1.02042 0.97964 0.99879 1.69853 1.44950 1.21553 1.26978 0.85576 0.80245 0.79073 0.77869 1.21182 1.18061 1.22597 1.22477 1.00136 1.00573 0.95552 1.22113 1.03410 0.77439 0.98525 1.48210 1.53885 1.10138 1.19512 1.18098 0.77604 0.85839 0.83358 1.90814 1.55354 1.18129 1.80353 1.19939 0.92200 1.04745 0.98643 1.21579 1.00548 0.90179 0.91545 1.21561 0.93285 1.00343 0.97360 1.17772 0.93260 0.95326 0.83818 1.91595 1.92998 1.79129 1.45843 1.17607 0.80420 1.06782 0.96060 1.91540 1.34488 1.95225 1.89451 1.17528 0.86373 0.96355 0.90140 1.91563 1.63587 1.79313 1.76231 0.91192 0.91109 0.90558 0.93106 0.90118 0.80724 0.93546 0.91154 0.93719 0.87941 0.87511 0.78706 0.77634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.74 9.02 71.98 0.65 -2.09 16 2 C 0.15 3.34 3.21 44.98 0.14 3.48 16 3 H 0.09 2.29 7.00 -2.39 -0.02 2.27 16 4 C -0.13 -3.64 5.02 30.67 0.15 -3.48 16 5 C 0.18 5.72 2.52 45.02 0.11 5.83 16 6 H 0.06 2.08 6.44 -2.39 -0.02 2.06 16 7 N -0.75 -32.66 4.92 -322.80 -1.59 -34.25 16 8 C -0.22 -11.61 10.41 84.03 0.87 -10.74 16 9 H 0.07 3.87 8.06 -2.91 -0.02 3.85 16 10 C -0.06 -3.46 5.50 84.86 0.47 -2.99 16 11 N -0.98 -61.03 13.97 21.65 0.30 -60.73 16 12 Si 0.94 44.87 27.73 68.60 1.90 46.77 16 13 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 14 H -0.26 -11.09 6.52 99.48 0.65 -10.44 16 15 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 16 C -0.15 -4.10 5.66 30.67 0.17 -3.92 16 17 C 0.11 1.93 5.14 86.36 0.44 2.37 16 18 N -0.59 -12.59 2.68 -798.70 -2.14 -14.73 16 19 C 0.56 13.77 6.89 86.71 0.60 14.36 16 20 O -0.57 -18.49 16.26 -3.97 -0.06 -18.56 16 21 C -0.15 -2.82 4.61 -20.06 -0.09 -2.91 16 22 C -0.02 -0.18 7.77 22.52 0.17 0.00 16 23 C -0.11 -0.70 10.00 22.27 0.22 -0.47 16 24 C 0.12 1.65 7.31 22.49 0.16 1.81 16 25 F -0.12 -1.79 17.17 44.97 0.77 -1.02 16 26 C 0.01 0.25 7.30 22.41 0.16 0.41 16 27 F -0.13 -3.08 17.09 44.97 0.77 -2.32 16 28 C 0.12 2.69 7.27 22.70 0.17 2.85 16 29 F -0.13 -3.79 16.55 44.97 0.74 -3.05 16 30 H 0.07 1.23 5.72 -2.39 -0.01 1.22 16 31 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 33 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.08 2.22 8.14 -2.38 -0.02 2.20 16 35 H 0.36 15.63 5.66 -92.71 -0.52 15.10 16 36 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 37 H 0.07 2.16 8.14 -2.39 -0.02 2.15 16 38 H 0.04 1.38 8.14 -2.38 -0.02 1.36 16 39 H 0.10 1.41 5.38 -2.39 -0.01 1.40 16 40 H 0.11 1.36 7.49 -2.39 -0.02 1.35 16 41 H 0.20 0.36 7.75 -2.91 -0.02 0.34 16 42 H 0.21 -0.33 8.06 -2.91 -0.02 -0.36 16 Total: -1.00 -74.67 353.49 5.62 -69.06 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: 0.50 Total: 14.29 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: 4.42 Total: 4.52 kcal Atomic # 7 Polarization: -106.27 SS G_CDS: -3.43 Total: -109.70 kcal Atomic # 8 Polarization: -18.49 SS G_CDS: -0.06 Total: -18.56 kcal Atomic # 9 Polarization: -8.67 SS G_CDS: 2.28 Total: -6.38 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 1.90 Total: 46.77 kcal Total: -74.67 5.62 -69.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044724607.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.581 kcal (2) G-P(sol) polarization free energy of solvation -74.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds