Wall clock time and date at job start Wed Apr 1 2020 02:18:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.70521 * 2 1 4 4 C 1.53194 * 109.58534 * 120.35826 * 2 1 3 5 5 C 1.53037 * 109.31226 * 174.42108 * 4 2 1 6 6 H 1.09003 * 109.45841 * 178.62862 * 5 4 2 7 7 N 1.46495 * 109.46137 * 58.65211 * 5 4 2 8 8 C 1.36942 * 119.99893 * 154.97289 * 7 5 4 9 9 H 1.08002 * 120.00255 * 0.02562 * 8 7 5 10 10 C 1.38816 * 119.99796 * 179.97438 * 8 7 5 11 11 N 1.31623 * 119.99999 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 119.99886 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.47395 * 90.00111 * 12 10 8 14 14 H 1.48507 * 109.47041 * 329.99962 * 12 10 8 15 15 H 1.48498 * 109.46989 * 210.00325 * 12 10 8 16 16 C 1.53048 * 109.52650 * 298.63601 * 5 4 2 17 17 C 1.53163 * 109.32293 * 61.37528 * 16 5 4 18 18 N 1.46927 * 108.76861 * 305.35110 * 17 16 5 19 19 C 1.34777 * 120.63187 * 233.63169 * 18 17 16 20 20 O 1.21574 * 119.99722 * 186.23269 * 19 18 17 21 21 C 1.47732 * 120.00145 * 6.23507 * 19 18 17 22 22 C 1.39628 * 120.09687 * 33.52716 * 21 19 18 23 23 C 1.38079 * 119.89267 * 179.79070 * 22 21 19 24 24 F 1.35105 * 119.94546 * 180.23484 * 23 22 21 25 25 C 1.38782 * 120.10290 * 0.47098 * 23 22 21 26 26 F 1.35094 * 119.90180 * 179.76895 * 25 23 22 27 27 C 1.38786 * 120.20012 * 359.78019 * 25 23 22 28 28 F 1.35101 * 119.94668 * 179.97438 * 27 25 23 29 29 C 1.38074 * 120.10230 * 359.97438 * 27 25 23 30 30 H 1.09000 * 109.47102 * 292.48936 * 1 2 3 31 31 H 1.08997 * 109.46780 * 52.48340 * 1 2 3 32 32 H 1.08995 * 109.47477 * 172.48366 * 1 2 3 33 33 H 1.08997 * 109.50241 * 54.46811 * 4 2 1 34 34 H 1.09003 * 109.52109 * 294.38808 * 4 2 1 35 35 H 0.96995 * 120.00044 * 334.97204 * 7 5 4 36 36 H 0.96993 * 119.99746 * 359.97438 * 11 10 8 37 37 H 1.08998 * 109.49664 * 181.30990 * 16 5 4 38 38 H 1.08991 * 109.49572 * 301.40926 * 16 5 4 39 39 H 1.08998 * 109.58952 * 185.57195 * 17 16 5 40 40 H 1.09002 * 109.70998 * 65.21019 * 17 16 5 41 41 H 1.08005 * 120.05514 * 0.02763 * 22 21 19 42 42 H 1.07999 * 120.04874 * 180.02562 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0435 -0.7295 1.2454 5 6 3.5674 -0.8481 1.1701 6 1 3.9377 -1.3452 2.0668 7 7 4.1570 0.4896 1.0749 8 6 5.4412 0.7036 1.4995 9 1 6.0196 -0.1138 1.9041 10 6 6.0001 1.9711 1.4088 11 7 5.2954 2.9672 0.9152 12 14 7.7521 2.2629 1.9872 13 1 8.6900 2.0397 0.8578 14 1 8.0725 1.3215 3.0902 15 1 7.8866 3.6595 2.4737 16 6 3.9565 -1.6658 -0.0637 17 6 3.4650 -0.9471 -1.3237 18 7 2.0225 -0.6997 -1.1945 19 6 1.1673 -1.1070 -2.1532 20 8 -0.0070 -0.7984 -2.0913 21 6 1.6568 -1.9286 -3.2792 22 6 2.6920 -2.8441 -3.0799 23 6 3.1433 -3.6129 -4.1343 24 9 4.1417 -4.5025 -3.9415 25 6 2.5762 -3.4698 -5.3929 26 9 3.0241 -4.2208 -6.4227 27 6 1.5506 -2.5573 -5.5968 28 9 1.0026 -2.4218 -6.8242 29 6 1.0894 -1.7879 -4.5472 30 1 -0.3633 0.3931 0.9495 31 1 -0.3633 0.6258 -0.8151 32 1 -0.3634 -1.0188 -0.1344 33 1 1.6029 -1.7254 1.2914 34 1 1.7659 -0.1674 2.1371 35 1 3.6378 1.2237 0.7112 36 1 4.3858 2.8156 0.6145 37 1 5.0408 -1.7697 -0.1041 38 1 3.4979 -2.6528 -0.0054 39 1 3.6517 -1.5719 -2.1971 40 1 3.9901 0.0017 -1.4342 41 1 3.1364 -2.9535 -2.1016 42 1 0.2909 -1.0784 -4.7068 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044760752.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:18:16 Heat of formation + Delta-G solvation = -94.370044 kcal Electronic energy + Delta-G solvation = -30739.639304 eV Core-core repulsion = 26079.059365 eV Total energy + Delta-G solvation = -4660.579939 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.130 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -50.14287 -49.54078 -48.82249 -41.08459 -38.81212 -37.62707 -34.64366 -33.29590 -32.20215 -31.11891 -30.64483 -29.00017 -27.23867 -24.99743 -24.04753 -23.72621 -23.47799 -22.05313 -20.66533 -19.18751 -18.44252 -18.23594 -17.96302 -17.35992 -17.16862 -16.58830 -16.33399 -16.15190 -15.83360 -15.58774 -15.28865 -15.27765 -14.76596 -14.59390 -14.36411 -14.05243 -13.82641 -13.70067 -13.53139 -13.20924 -12.92187 -12.76129 -12.37132 -12.16504 -12.11939 -11.95296 -11.67288 -11.39725 -10.89477 -10.85771 -10.63711 -10.46499 -10.33713 -10.06507 -9.41033 -9.38355 -9.26464 -9.18169 -9.00646 -8.44964 -7.15121 -6.18545 -3.20264 -0.04875 0.27765 2.18593 2.69465 2.90793 3.05605 3.46593 3.50323 3.64555 3.71142 3.73480 3.92164 3.99305 4.39487 4.59174 4.80177 4.93872 4.98472 5.08279 5.14853 5.19964 5.26112 5.30502 5.42496 5.47560 5.50031 5.55087 5.64820 5.79247 5.89289 5.94863 6.06734 6.08634 6.18363 6.27642 6.35895 6.52978 6.53560 6.61614 6.80901 7.38269 7.72684 8.01287 8.66152 9.11529 9.98040 10.12421 11.29018 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.012934 B = 0.003378 C = 0.002987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2164.295641 B = 8287.457613 C = 9371.318051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.147 3.853 3 H 0.079 0.921 4 C -0.135 4.135 5 C 0.180 3.820 6 H 0.054 0.946 7 N -0.733 5.733 8 C -0.333 4.333 9 H 0.065 0.935 10 C -0.042 4.042 11 N -0.942 5.942 12 Si 1.080 2.920 13 H -0.296 1.296 14 H -0.295 1.295 15 H -0.288 1.288 16 C -0.152 4.152 17 C 0.085 3.915 18 N -0.586 5.586 19 C 0.558 3.442 20 O -0.525 6.525 21 C -0.077 4.077 22 C -0.113 4.113 23 C 0.094 3.906 24 F -0.114 7.114 25 C 0.051 3.949 26 F -0.114 7.114 27 C 0.094 3.906 28 F -0.115 7.115 29 C -0.082 4.082 30 H 0.046 0.954 31 H 0.074 0.926 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.077 0.923 35 H 0.366 0.634 36 H 0.254 0.746 37 H 0.079 0.921 38 H 0.051 0.949 39 H 0.090 0.910 40 H 0.087 0.913 41 H 0.175 0.825 42 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.153 -12.981 -9.358 17.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.045 3.955 3 H 0.097 0.903 4 C -0.174 4.174 5 C 0.069 3.931 6 H 0.072 0.928 7 N -0.376 5.376 8 C -0.464 4.464 9 H 0.083 0.917 10 C -0.240 4.240 11 N -0.587 5.587 12 Si 0.911 3.089 13 H -0.223 1.223 14 H -0.222 1.222 15 H -0.214 1.214 16 C -0.193 4.193 17 C -0.037 4.037 18 N -0.317 5.317 19 C 0.345 3.655 20 O -0.403 6.403 21 C -0.080 4.080 22 C -0.132 4.132 23 C 0.074 3.926 24 F -0.092 7.092 25 C 0.029 3.971 26 F -0.092 7.092 27 C 0.073 3.927 28 F -0.094 7.094 29 C -0.101 4.101 30 H 0.065 0.935 31 H 0.093 0.907 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.095 0.905 35 H 0.201 0.799 36 H 0.065 0.935 37 H 0.097 0.903 38 H 0.070 0.930 39 H 0.107 0.893 40 H 0.105 0.895 41 H 0.192 0.808 42 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -7.381 -11.860 -9.084 16.664 hybrid contribution -0.854 -1.355 -0.746 1.767 sum -8.235 -13.215 -9.831 18.415 Atomic orbital electron populations 1.22205 0.92840 1.03408 1.01008 1.21320 0.95105 0.95911 0.83198 0.90269 1.22288 0.97442 1.00514 0.97197 1.20111 0.90206 0.87751 0.95007 0.92758 1.42515 1.14105 1.04703 1.76304 1.20053 0.90427 0.97052 1.38898 0.91679 1.25726 1.06025 0.91545 1.00671 1.70876 1.10932 1.32396 1.44480 0.83224 0.74354 0.75621 0.75677 1.22335 1.22163 1.21425 1.22551 1.01910 0.97906 0.96966 1.22448 0.78992 1.02953 0.99262 1.48101 1.07741 1.56099 1.19797 1.17866 0.85894 0.80066 0.81710 1.90866 1.16642 1.56719 1.76109 1.19797 0.95954 0.97677 0.94609 1.21789 0.96231 0.94907 1.00319 1.17149 0.90449 0.92863 0.92150 1.91606 1.57165 1.65011 1.95397 1.17783 0.98199 0.96069 0.85006 1.91577 1.87878 1.73691 1.56042 1.17123 0.95094 0.98360 0.82106 1.91591 1.83883 1.94672 1.39221 1.21168 1.00254 0.98984 0.89734 0.93501 0.90702 0.91775 0.91740 0.90469 0.79904 0.93460 0.90270 0.93010 0.89274 0.89458 0.80822 0.81785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 7.61 37.16 0.28 -1.63 16 2 C 0.15 2.18 3.20 -67.60 -0.22 1.96 16 3 H 0.08 1.34 6.64 -51.93 -0.34 0.99 16 4 C -0.14 -2.00 5.07 -26.61 -0.13 -2.13 16 5 C 0.18 3.11 3.10 -67.89 -0.21 2.90 16 6 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 7 N -0.73 -16.17 4.31 -53.38 -0.23 -16.40 16 8 C -0.33 -8.56 9.93 -15.06 -0.15 -8.71 16 9 H 0.07 1.66 7.83 -52.49 -0.41 1.25 16 10 C -0.04 -1.14 5.50 -17.43 -0.10 -1.23 16 11 N -0.94 -27.58 13.70 55.49 0.76 -26.82 16 12 Si 1.08 24.74 29.92 -169.99 -5.09 19.66 16 13 H -0.30 -6.61 7.11 56.52 0.40 -6.21 16 14 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 15 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 16 C -0.15 -2.22 5.44 -26.62 -0.14 -2.37 16 17 C 0.08 1.19 5.27 -3.72 -0.02 1.17 16 18 N -0.59 -8.16 2.97 -166.38 -0.49 -8.66 16 19 C 0.56 7.51 7.19 -12.38 -0.09 7.42 16 20 O -0.52 -8.02 12.38 5.30 0.07 -7.96 16 21 C -0.08 -0.85 5.44 -104.98 -0.57 -1.42 16 22 C -0.11 -1.14 7.37 -39.12 -0.29 -1.43 16 23 C 0.09 0.98 7.29 -39.44 -0.29 0.69 16 24 F -0.11 -1.25 17.17 2.25 0.04 -1.21 16 25 C 0.05 0.54 7.32 -39.18 -0.29 0.26 16 26 F -0.11 -1.31 17.08 2.25 0.04 -1.27 16 27 C 0.09 0.96 7.29 -39.44 -0.29 0.67 16 28 F -0.12 -1.23 17.17 2.25 0.04 -1.19 16 29 C -0.08 -0.82 9.58 -39.12 -0.37 -1.20 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 1.12 6.68 -51.93 -0.35 0.77 16 32 H 0.06 0.91 6.81 -51.93 -0.35 0.56 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 35 H 0.37 8.46 4.89 -40.82 -0.20 8.26 16 36 H 0.25 7.31 6.77 -40.82 -0.28 7.03 16 37 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.05 0.63 7.61 -51.93 -0.40 0.24 16 39 H 0.09 1.04 3.52 -51.93 -0.18 0.85 16 40 H 0.09 1.50 7.74 -51.93 -0.40 1.09 16 41 H 0.17 1.66 4.99 -52.48 -0.26 1.39 16 42 H 0.16 1.51 7.98 -52.49 -0.42 1.09 16 LS Contribution 344.75 15.07 5.20 5.20 Total: -1.00 -28.96 344.75 -7.05 -36.01 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -4.50 Total: 7.71 kcal Atomic # 6 Polarization: -2.18 SS G_CDS: -2.87 Total: -5.06 kcal Atomic # 7 Polarization: -51.91 SS G_CDS: 0.04 Total: -51.87 kcal Atomic # 8 Polarization: -8.02 SS G_CDS: 0.07 Total: -7.96 kcal Atomic # 9 Polarization: -3.79 SS G_CDS: 0.12 Total: -3.68 kcal Atomic # 14 Polarization: 24.74 SS G_CDS: -5.09 Total: 19.66 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -28.96 -7.05 -36.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044760752.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.362 kcal (2) G-P(sol) polarization free energy of solvation -28.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds