Wall clock time and date at job start Wed Apr 1 2020 02:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08987 * 109.58835 * 2 1 4 4 C 1.53195 * 109.58887 * 239.71091 * 2 1 3 5 5 C 1.53039 * 109.31455 * 185.57954 * 4 2 1 6 6 H 1.09001 * 109.45638 * 301.35887 * 5 4 2 7 7 N 1.46498 * 109.46056 * 181.39124 * 5 4 2 8 8 C 1.36932 * 120.00316 * 154.97421 * 7 5 4 9 9 H 1.07999 * 120.00004 * 0.02562 * 8 7 5 10 10 C 1.38810 * 120.00433 * 179.97438 * 8 7 5 11 11 N 1.31627 * 119.99699 * 0.02562 * 10 8 7 12 12 Si 1.86796 * 120.00323 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.47112 * 0.02562 * 12 10 8 14 14 H 1.48504 * 109.47135 * 240.00217 * 12 10 8 15 15 H 1.48502 * 109.47193 * 120.00282 * 12 10 8 16 16 C 1.53039 * 109.52729 * 61.37552 * 5 4 2 17 17 C 1.53192 * 109.31162 * 298.61521 * 16 5 4 18 18 N 1.46927 * 108.76387 * 54.65480 * 17 16 5 19 19 C 1.34777 * 120.63063 * 126.36567 * 18 17 16 20 20 O 1.21564 * 120.00363 * 186.22512 * 19 18 17 21 21 C 1.47737 * 120.00189 * 6.22099 * 19 18 17 22 22 C 1.39636 * 120.09791 * 28.75738 * 21 19 18 23 23 C 1.38071 * 119.89612 * 179.77150 * 22 21 19 24 24 F 1.35099 * 119.95117 * 180.23175 * 23 22 21 25 25 C 1.38787 * 120.09946 * 0.48666 * 23 22 21 26 26 F 1.35102 * 119.89499 * 179.76934 * 25 23 22 27 27 C 1.38779 * 120.20589 * 359.78788 * 25 23 22 28 28 F 1.35100 * 119.95005 * 179.97438 * 27 25 23 29 29 C 1.38079 * 120.09914 * 359.95671 * 27 25 23 30 30 H 1.08999 * 109.47148 * 183.15884 * 1 2 3 31 31 H 1.08997 * 109.47537 * 303.15937 * 1 2 3 32 32 H 1.09005 * 109.46728 * 63.16426 * 1 2 3 33 33 H 1.09007 * 109.49335 * 65.63005 * 4 2 1 34 34 H 1.09000 * 109.52595 * 305.55016 * 4 2 1 35 35 H 0.97007 * 119.99727 * 334.96984 * 7 5 4 36 36 H 0.96995 * 120.00053 * 359.97438 * 11 10 8 37 37 H 1.09004 * 109.49549 * 58.58012 * 16 5 4 38 38 H 1.08991 * 109.49942 * 178.67277 * 16 5 4 39 39 H 1.08998 * 109.59967 * 294.86936 * 17 16 5 40 40 H 1.08999 * 109.58624 * 174.43422 * 17 16 5 41 41 H 1.08000 * 120.04895 * 0.02562 * 22 21 19 42 42 H 1.08000 * 120.04994 * 179.97438 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0268 0.0000 4 6 2.0436 -0.7279 -1.2463 5 6 3.5675 -0.8467 -1.1711 6 1 4.0061 0.1486 -1.0988 7 7 4.0653 -1.5129 -2.3772 8 6 5.3495 -1.2950 -2.7992 9 1 5.9957 -0.6323 -2.2428 10 6 5.8213 -1.9267 -3.9417 11 7 5.0340 -2.7348 -4.6196 12 14 7.5731 -1.6288 -4.5178 13 1 8.2461 -0.6858 -3.5889 14 1 7.5527 -1.0483 -5.8845 15 1 8.3132 -2.9161 -4.5378 16 6 3.9566 -1.6661 0.0615 17 6 3.4650 -0.9487 1.3226 18 7 2.0225 -0.7011 1.1936 19 6 1.1672 -1.1096 2.1518 20 8 -0.0317 -1.0011 1.9829 21 6 1.6868 -1.6894 3.4074 22 6 2.9385 -1.3038 3.8915 23 6 3.4179 -1.8448 5.0678 24 9 4.6268 -1.4689 5.5396 25 6 2.6622 -2.7780 5.7636 26 9 3.1374 -3.3082 6.9118 27 6 1.4201 -3.1685 5.2833 28 9 0.6890 -4.0778 5.9645 29 6 0.9302 -2.6290 4.1105 30 1 -0.3633 -1.0261 0.0566 31 1 -0.3634 0.5621 0.8603 32 1 -0.3633 0.4640 -0.9171 33 1 1.7661 -0.1642 -2.1370 34 1 1.6030 -1.7238 -1.2940 35 1 3.4850 -2.1085 -2.8767 36 1 4.1243 -2.8891 -4.3207 37 1 3.4978 -2.6531 0.0019 38 1 5.0408 -1.7703 0.1017 39 1 3.9902 0.0001 1.4317 40 1 3.6517 -1.5746 2.1953 41 1 3.5288 -0.5804 3.3486 42 1 -0.0363 -2.9338 3.7373 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044760754.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:18:25 Heat of formation + Delta-G solvation = -95.717482 kcal Electronic energy + Delta-G solvation = -30160.414786 eV Core-core repulsion = 25499.776418 eV Total energy + Delta-G solvation = -4660.638368 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.130 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -50.21634 -49.61711 -48.89627 -41.17645 -38.86815 -37.58428 -34.95428 -33.42651 -32.20600 -31.19120 -30.76849 -29.18609 -27.19523 -25.04223 -24.22262 -23.89215 -22.98835 -22.04054 -20.61563 -19.82509 -18.48603 -18.38027 -18.15874 -17.37708 -17.24953 -16.72609 -16.31974 -15.91967 -15.85258 -15.68154 -15.45731 -15.32237 -14.89047 -14.81463 -14.54798 -14.24380 -13.72237 -13.59797 -13.50922 -13.22576 -13.01233 -12.89063 -12.53125 -12.36768 -12.19133 -12.04034 -11.65844 -11.46520 -10.99481 -10.90698 -10.63732 -10.51918 -10.19969 -10.09690 -9.51124 -9.47921 -9.33140 -9.22774 -8.97135 -8.67316 -7.12619 -6.17208 -3.18405 -0.14734 0.19452 2.08440 2.54599 2.81730 2.96851 3.47037 3.53357 3.61934 3.62365 3.65214 3.81829 3.87771 4.28885 4.58431 4.68720 4.80760 4.87093 4.95960 5.06783 5.07775 5.14897 5.22456 5.27908 5.35220 5.38829 5.53742 5.60055 5.71621 5.83378 5.93758 5.98665 6.02717 6.14787 6.23291 6.26928 6.32840 6.55692 6.69497 6.85023 7.19416 7.73437 7.87241 8.68409 9.14248 10.00744 10.15289 11.31033 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.013322 B = 0.002938 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2101.331203 B = 9527.593031 C =10782.934852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.148 3.852 3 H 0.077 0.923 4 C -0.137 4.137 5 C 0.184 3.816 6 H 0.050 0.950 7 N -0.735 5.735 8 C -0.334 4.334 9 H 0.066 0.934 10 C -0.044 4.044 11 N -0.943 5.943 12 Si 1.084 2.916 13 H -0.294 1.294 14 H -0.293 1.293 15 H -0.293 1.293 16 C -0.151 4.151 17 C 0.081 3.919 18 N -0.591 5.591 19 C 0.560 3.440 20 O -0.521 6.521 21 C -0.080 4.080 22 C -0.116 4.116 23 C 0.094 3.906 24 F -0.113 7.113 25 C 0.053 3.947 26 F -0.113 7.113 27 C 0.094 3.906 28 F -0.115 7.115 29 C -0.080 4.080 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.046 0.954 33 H 0.077 0.923 34 H 0.064 0.936 35 H 0.367 0.633 36 H 0.256 0.744 37 H 0.060 0.940 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.094 0.906 41 H 0.174 0.826 42 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.423 3.753 20.351 21.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.046 3.954 3 H 0.095 0.905 4 C -0.176 4.176 5 C 0.073 3.927 6 H 0.068 0.932 7 N -0.376 5.376 8 C -0.465 4.465 9 H 0.084 0.916 10 C -0.241 4.241 11 N -0.588 5.588 12 Si 0.915 3.085 13 H -0.221 1.221 14 H -0.220 1.220 15 H -0.220 1.220 16 C -0.192 4.192 17 C -0.041 4.041 18 N -0.323 5.323 19 C 0.347 3.653 20 O -0.399 6.399 21 C -0.084 4.084 22 C -0.135 4.135 23 C 0.074 3.926 24 F -0.092 7.092 25 C 0.031 3.969 26 F -0.091 7.091 27 C 0.073 3.927 28 F -0.093 7.093 29 C -0.099 4.099 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.065 0.935 33 H 0.095 0.905 34 H 0.083 0.917 35 H 0.200 0.800 36 H 0.067 0.933 37 H 0.079 0.921 38 H 0.097 0.903 39 H 0.094 0.906 40 H 0.112 0.888 41 H 0.191 0.809 42 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -6.714 3.554 19.235 20.681 hybrid contribution -0.832 -0.146 1.569 1.782 sum -7.546 3.408 20.804 22.391 Atomic orbital electron populations 1.22235 0.92537 1.03811 1.00838 1.21395 0.95647 0.95068 0.83316 0.90542 1.22334 0.97600 1.01041 0.96632 1.20109 0.90728 0.95043 0.86793 0.93219 1.42443 1.13101 1.54860 1.27243 1.20078 0.89566 1.26537 1.10300 0.91632 1.25770 1.06258 0.97501 0.94612 1.70821 1.08189 1.38360 1.41442 0.83167 0.74177 0.75557 0.75577 1.22090 1.21983 1.22005 1.22690 1.02030 1.00006 0.94505 1.22650 0.79428 1.01123 1.00888 1.48112 1.07682 1.56361 1.20124 1.17877 0.86203 0.78612 0.82589 1.90884 1.14752 1.55262 1.79024 1.19779 0.93697 0.98063 0.96812 1.21879 0.95960 1.01684 0.93952 1.17150 0.83156 0.97882 0.94459 1.91607 1.40109 1.89688 1.87764 1.17812 0.93772 0.98865 0.86441 1.91586 1.87761 1.84435 1.45334 1.17133 0.89315 0.93056 0.93160 1.91597 1.75650 1.63510 1.78538 1.21189 1.01539 0.95264 0.91942 0.90966 0.91236 0.93496 0.90461 0.91734 0.79994 0.93267 0.92117 0.90271 0.90567 0.88835 0.80862 0.81698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 7.59 37.16 0.28 -1.42 16 2 C 0.15 1.86 3.49 -67.60 -0.24 1.62 16 3 H 0.08 0.89 8.14 -51.94 -0.42 0.47 16 4 C -0.14 -2.07 4.84 -26.61 -0.13 -2.20 16 5 C 0.18 3.26 2.73 -67.89 -0.19 3.08 16 6 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 7 N -0.73 -17.21 5.12 -53.39 -0.27 -17.49 16 8 C -0.33 -8.88 9.93 -15.06 -0.15 -9.03 16 9 H 0.07 1.71 7.83 -52.49 -0.41 1.30 16 10 C -0.04 -1.22 5.50 -17.43 -0.10 -1.32 16 11 N -0.94 -28.40 13.70 55.49 0.76 -27.64 16 12 Si 1.08 25.19 29.92 -169.99 -5.09 20.10 16 13 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 14 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 15 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 16 C -0.15 -2.31 5.66 -26.61 -0.15 -2.46 16 17 C 0.08 0.89 4.69 -3.71 -0.02 0.88 16 18 N -0.59 -6.96 2.97 -166.37 -0.49 -7.45 16 19 C 0.56 6.63 7.37 -12.38 -0.09 6.53 16 20 O -0.52 -7.24 12.09 5.31 0.06 -7.17 16 21 C -0.08 -0.77 5.48 -104.98 -0.58 -1.35 16 22 C -0.12 -0.97 7.38 -39.12 -0.29 -1.26 16 23 C 0.09 0.86 7.29 -39.44 -0.29 0.57 16 24 F -0.11 -1.11 17.17 2.25 0.04 -1.08 16 25 C 0.05 0.51 7.32 -39.18 -0.29 0.23 16 26 F -0.11 -1.22 17.08 2.25 0.04 -1.18 16 27 C 0.09 0.88 7.29 -39.44 -0.29 0.59 16 28 F -0.11 -1.15 17.17 2.25 0.04 -1.11 16 29 C -0.08 -0.72 9.57 -39.12 -0.37 -1.10 16 30 H 0.07 1.01 6.75 -51.93 -0.35 0.66 16 31 H 0.07 0.89 6.75 -51.93 -0.35 0.54 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 34 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.37 9.04 6.63 -40.82 -0.27 8.77 16 36 H 0.26 7.59 6.77 -40.82 -0.28 7.31 16 37 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 38 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 39 H 0.08 0.72 8.00 -51.93 -0.42 0.31 16 40 H 0.09 0.87 4.09 -51.93 -0.21 0.65 16 41 H 0.17 1.22 5.33 -52.49 -0.28 0.94 16 42 H 0.17 1.38 7.91 -52.49 -0.41 0.96 16 LS Contribution 349.67 15.07 5.27 5.27 Total: -1.00 -30.54 349.67 -7.25 -37.79 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -4.73 Total: 6.58 kcal Atomic # 6 Polarization: -3.75 SS G_CDS: -2.87 Total: -6.63 kcal Atomic # 7 Polarization: -52.57 SS G_CDS: -0.01 Total: -52.58 kcal Atomic # 8 Polarization: -7.24 SS G_CDS: 0.06 Total: -7.17 kcal Atomic # 9 Polarization: -3.48 SS G_CDS: 0.12 Total: -3.36 kcal Atomic # 14 Polarization: 25.19 SS G_CDS: -5.09 Total: 20.10 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.54 -7.25 -37.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044760754.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.926 kcal (2) G-P(sol) polarization free energy of solvation -30.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds