Wall clock time and date at job start Wed Apr 1 2020 00:30:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50699 * 109.47103 * 2 1 4 4 N 1.34241 * 126.27794 * 265.15688 * 3 2 1 5 5 H 0.96995 * 125.74171 * 359.97438 * 4 3 2 6 6 N 1.39940 * 108.51953 * 180.30110 * 4 3 2 7 7 C 1.30528 * 108.89375 * 359.72656 * 6 4 3 8 8 Cl 1.73598 * 126.00378 * 180.02562 * 7 6 4 9 9 C 1.38065 * 126.28454 * 85.00020 * 3 2 1 10 10 C 1.47385 * 126.42225 * 359.96533 * 9 3 2 11 11 O 1.21601 * 120.00300 * 269.71722 * 10 9 3 12 12 N 1.34780 * 119.99688 * 89.71097 * 10 9 3 13 13 C 1.46504 * 120.00322 * 0.02562 * 12 10 9 14 14 C 1.46503 * 119.99950 * 180.02562 * 12 10 9 15 15 H 1.08997 * 110.63956 * 358.31589 * 14 12 10 16 16 C 1.54323 * 110.72166 * 121.45362 * 14 12 10 17 17 N 1.47021 * 107.27226 * 140.73052 * 16 14 12 18 18 C 1.36933 * 125.65074 * 181.02076 * 17 16 14 19 19 H 1.08005 * 119.99933 * 19.60441 * 18 17 16 20 20 C 1.38808 * 120.00365 * 199.60023 * 18 17 16 21 21 N 1.31627 * 119.99820 * 28.57549 * 20 18 17 22 22 Si 1.86799 * 120.00377 * 208.29906 * 20 18 17 23 23 H 1.48497 * 109.47095 * 180.27771 * 22 20 18 24 24 H 1.48503 * 109.47115 * 300.27695 * 22 20 18 25 25 H 1.48496 * 109.47139 * 60.27388 * 22 20 18 26 26 C 1.47431 * 108.70053 * 1.29310 * 17 16 14 27 27 C 1.55122 * 104.72104 * 335.54690 * 26 17 16 28 28 H 1.09003 * 111.19556 * 279.18984 * 27 26 17 29 29 O 1.42906 * 110.93672 * 155.29045 * 27 26 17 30 30 H 1.08996 * 109.47401 * 59.99763 * 1 2 3 31 31 H 1.09000 * 109.47036 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46784 * 299.99735 * 1 2 3 33 33 H 1.09004 * 109.46784 * 240.00265 * 2 1 3 34 34 H 1.08996 * 109.47368 * 119.99681 * 2 1 3 35 35 H 1.08994 * 109.47073 * 269.99952 * 13 12 10 36 36 H 1.08998 * 109.46883 * 29.99617 * 13 12 10 37 37 H 1.08993 * 109.47019 * 149.99910 * 13 12 10 38 38 H 1.09007 * 109.88115 * 21.31986 * 16 14 12 39 39 H 1.08996 * 109.88387 * 260.15483 * 16 14 12 40 40 H 0.96997 * 119.99651 * 5.39997 * 21 20 18 41 41 H 1.09002 * 110.36646 * 94.47919 * 26 17 16 42 42 H 1.08999 * 110.36470 * 216.80200 * 26 17 16 43 43 H 0.96698 * 113.99973 * 67.95939 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.3833 2.1392 -1.0783 5 1 2.3572 1.8309 -1.9976 6 7 2.8001 3.4054 -0.6525 7 6 2.7032 3.4671 0.6478 8 17 3.1047 4.8359 1.6372 9 6 2.2133 2.2235 1.1087 10 6 1.9509 1.8515 2.5105 11 8 0.8554 2.0529 2.9982 12 7 2.9253 1.2880 3.2518 13 6 4.2454 1.0457 2.6644 14 6 2.6645 0.9177 4.6450 15 1 1.6490 1.1913 4.9316 16 6 2.9057 -0.5908 4.8635 17 7 3.5520 -0.7440 6.1751 18 6 3.9507 -1.9284 6.7349 19 1 4.0968 -2.7982 6.1114 20 6 4.1671 -2.0113 8.1035 21 7 3.5017 -1.2258 8.9237 22 14 5.3970 -3.2428 8.7818 23 1 5.4378 -3.1373 10.2625 24 1 4.9869 -4.6165 8.3946 25 1 6.7440 -2.9536 8.2276 26 6 3.6937 0.5880 6.7908 27 6 3.6993 1.5763 5.5952 28 1 4.6831 1.6245 5.1283 29 8 3.2654 2.8750 6.0041 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5138 0.8900 35 1 4.2659 0.0536 2.2136 36 1 4.4462 1.7963 1.9000 37 1 5.0061 1.1070 3.4425 38 1 3.5581 -0.9789 4.0812 39 1 1.9548 -1.1234 4.8542 40 1 2.8048 -0.6450 8.5804 41 1 2.8509 0.7924 7.4510 42 1 4.6324 0.6537 7.3410 43 1 3.8801 3.3259 6.5990 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047407532.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:30:04 Heat of formation + Delta-G solvation = 16.008715 kcal Electronic energy + Delta-G solvation = -28774.941944 eV Core-core repulsion = 24690.865029 eV Total energy + Delta-G solvation = -4084.076915 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.125 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -41.89816 -39.68357 -37.84978 -37.03289 -35.31374 -34.89317 -34.49093 -32.22923 -31.53558 -29.88516 -28.40080 -27.59564 -26.59396 -24.65012 -24.13092 -22.53379 -22.15205 -20.55379 -20.08502 -18.89590 -18.08239 -17.61909 -17.26209 -16.39013 -16.03128 -15.61507 -15.42894 -15.12121 -14.61348 -14.32970 -14.08947 -13.90473 -13.73198 -13.56836 -13.15128 -13.05100 -12.80097 -12.46226 -12.29786 -12.25305 -12.18116 -12.07773 -11.69069 -11.67644 -11.53951 -11.28933 -10.95736 -10.76498 -10.63246 -10.17084 -10.05996 -9.96274 -9.76215 -9.74562 -9.38350 -9.00529 -8.49009 -8.39460 -7.01661 -6.16309 -3.23992 1.20753 1.21964 1.90378 2.53439 2.62044 3.17093 3.46561 3.49901 3.68333 4.08180 4.37852 4.40482 4.55448 4.60184 4.81840 4.85775 5.08008 5.09214 5.18755 5.21448 5.27464 5.36599 5.47946 5.51233 5.55290 5.59145 5.61698 5.66104 5.83254 5.93539 5.94474 5.97154 6.41803 6.51868 6.62400 6.72596 6.81352 6.91599 6.95189 7.50315 7.71331 8.00906 8.27777 8.41832 8.93703 9.73543 10.26853 11.15635 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.016218 B = 0.003319 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.072395 B = 8433.557299 C = 9331.853337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.068 4.068 3 C 0.145 3.855 4 N -0.447 5.447 5 H 0.447 0.553 6 N -0.277 5.277 7 C 0.158 3.842 8 Cl 0.024 6.976 9 C -0.257 4.257 10 C 0.598 3.402 11 O -0.524 6.524 12 N -0.590 5.590 13 C 0.080 3.920 14 C 0.138 3.862 15 H 0.114 0.886 16 C 0.131 3.869 17 N -0.596 5.596 18 C -0.342 4.342 19 H 0.066 0.934 20 C -0.022 4.022 21 N -0.911 5.911 22 Si 1.066 2.934 23 H -0.285 1.285 24 H -0.292 1.292 25 H -0.293 1.293 26 C 0.120 3.880 27 C 0.073 3.927 28 H 0.066 0.934 29 O -0.558 6.558 30 H 0.055 0.945 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.099 0.901 35 H 0.057 0.943 36 H 0.066 0.934 37 H 0.077 0.923 38 H 0.034 0.966 39 H 0.033 0.967 40 H 0.270 0.730 41 H 0.039 0.961 42 H 0.054 0.946 43 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.365 6.229 -20.719 21.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.107 4.107 3 C 0.013 3.987 4 N -0.156 5.156 5 H 0.294 0.706 6 N -0.102 5.102 7 C -0.034 4.034 8 Cl 0.052 6.948 9 C -0.273 4.273 10 C 0.384 3.616 11 O -0.400 6.400 12 N -0.322 5.322 13 C -0.063 4.063 14 C 0.035 3.965 15 H 0.132 0.868 16 C 0.004 3.996 17 N -0.324 5.324 18 C -0.469 4.469 19 H 0.084 0.916 20 C -0.225 4.225 21 N -0.550 5.550 22 Si 0.895 3.105 23 H -0.210 1.210 24 H -0.219 1.219 25 H -0.221 1.221 26 C -0.007 4.007 27 C 0.013 3.987 28 H 0.084 0.916 29 O -0.362 6.362 30 H 0.075 0.925 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.104 0.896 34 H 0.117 0.883 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.096 0.904 38 H 0.052 0.948 39 H 0.051 0.949 40 H 0.081 0.919 41 H 0.057 0.943 42 H 0.072 0.928 43 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 0.393 6.334 -20.343 21.310 hybrid contribution -0.311 0.251 -0.860 0.949 sum 0.082 6.585 -21.204 22.203 Atomic orbital electron populations 1.21778 0.92787 1.03039 1.03248 1.20421 0.97620 0.87781 1.04924 1.21443 0.96101 0.95161 0.85994 1.45816 1.51549 1.09334 1.08925 0.70641 1.77149 1.23317 0.99035 1.10745 1.22578 0.99950 0.90354 0.90557 1.98438 1.91897 1.39646 1.64811 1.19762 1.18284 0.94466 0.94755 1.17101 0.83954 0.76911 0.83666 1.90791 1.23441 1.53415 1.72318 1.47666 1.12117 1.60343 1.12053 1.21725 0.84550 1.00958 0.99089 1.22140 1.01046 0.94942 0.78401 0.86767 1.21602 0.96421 0.91246 0.90327 1.44343 1.69248 1.02102 1.16730 1.19697 1.45530 0.88870 0.92834 0.91612 1.25820 1.01900 1.02916 0.91849 1.70787 1.21138 1.26662 1.36446 0.83519 0.75943 0.74917 0.76138 1.21039 1.21911 1.22051 1.22197 1.00360 0.84850 0.93270 1.23524 0.96236 0.83005 0.95961 0.91631 1.86505 1.50631 1.30096 1.68984 0.92541 0.91061 0.90987 0.89583 0.88286 0.92443 0.91565 0.90414 0.94812 0.94933 0.91870 0.94286 0.92776 0.77896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.89 37.16 0.37 -0.85 16 2 C -0.07 -0.52 6.27 -27.88 -0.17 -0.70 16 3 C 0.15 1.45 6.55 -81.60 -0.53 0.91 16 4 N -0.45 -3.82 7.28 33.86 0.25 -3.57 16 5 H 0.45 2.04 8.96 -182.72 -1.64 0.40 16 6 N -0.28 -3.28 12.64 33.18 0.42 -2.86 16 7 C 0.16 2.10 7.58 -16.91 -0.13 1.97 16 8 Cl 0.02 0.32 29.19 -51.86 -1.51 -1.20 16 9 C -0.26 -3.44 4.11 -105.04 -0.43 -3.87 16 10 C 0.60 9.77 7.12 -12.54 -0.09 9.68 16 11 O -0.52 -10.49 16.47 5.28 0.09 -10.40 16 12 N -0.59 -9.26 2.89 -173.12 -0.50 -9.76 16 13 C 0.08 1.01 9.15 59.85 0.55 1.55 16 14 C 0.14 2.59 3.08 -66.09 -0.20 2.39 16 15 H 0.11 2.43 6.99 -51.93 -0.36 2.07 16 16 C 0.13 2.69 6.88 -3.07 -0.02 2.67 16 17 N -0.60 -14.68 3.26 -169.93 -0.55 -15.24 16 18 C -0.34 -9.37 10.00 -15.06 -0.15 -9.52 16 19 H 0.07 1.79 7.97 -52.48 -0.42 1.37 16 20 C -0.02 -0.62 5.09 -17.43 -0.09 -0.71 16 21 N -0.91 -27.06 13.02 55.49 0.72 -26.34 16 22 Si 1.07 24.63 30.00 -169.99 -5.10 19.53 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 24 H -0.29 -6.46 7.11 56.52 0.40 -6.05 16 25 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 26 C 0.12 2.72 5.12 -2.41 -0.01 2.71 16 27 C 0.07 1.35 3.97 -24.47 -0.10 1.26 16 28 H 0.07 1.12 6.11 -51.93 -0.32 0.80 16 29 O -0.56 -9.78 13.47 -35.23 -0.47 -10.25 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.10 0.87 8.08 -51.93 -0.42 0.45 16 35 H 0.06 0.64 7.89 -51.93 -0.41 0.23 16 36 H 0.07 0.76 6.64 -51.93 -0.34 0.42 16 37 H 0.08 1.00 6.09 -51.93 -0.32 0.68 16 38 H 0.03 0.65 6.94 -51.93 -0.36 0.29 16 39 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.27 8.13 6.18 -40.82 -0.25 7.88 16 41 H 0.04 0.98 6.81 -51.93 -0.35 0.63 16 42 H 0.05 1.30 8.07 -51.93 -0.42 0.88 16 43 H 0.37 4.91 9.12 45.56 0.42 5.33 16 LS Contribution 370.93 15.07 5.59 5.59 Total: -1.00 -35.21 370.93 -8.20 -43.41 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -6.11 Total: 3.61 kcal Atomic # 6 Polarization: 8.51 SS G_CDS: -1.02 Total: 7.50 kcal Atomic # 7 Polarization: -58.11 SS G_CDS: 0.33 Total: -57.77 kcal Atomic # 8 Polarization: -20.27 SS G_CDS: -0.39 Total: -20.66 kcal Atomic # 14 Polarization: 24.63 SS G_CDS: -5.10 Total: 19.53 kcal Atomic # 17 Polarization: 0.32 SS G_CDS: -1.51 Total: -1.20 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -35.21 -8.20 -43.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047407532.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.415 kcal (2) G-P(sol) polarization free energy of solvation -35.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds