Wall clock time and date at job start Wed Apr 1 2020 02:40:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 110.91836 * 2 1 4 4 C 1.54910 * 111.00324 * 236.10030 * 2 1 3 5 5 N 1.47425 * 104.83448 * 204.91762 * 4 2 1 6 6 C 1.34774 * 125.65193 * 204.08989 * 5 4 2 7 7 O 1.21566 * 119.99818 * 355.18659 * 6 5 4 8 8 C 1.47697 * 120.00030 * 175.17658 * 6 5 4 9 9 C 1.39663 * 120.16474 * 46.82268 * 8 6 5 10 10 C 1.37851 * 119.87816 * 179.97438 * 9 8 6 11 11 C 1.50696 * 119.89173 * 179.97438 * 10 9 8 12 12 F 1.39901 * 109.47168 * 300.00174 * 11 10 9 13 13 F 1.39904 * 109.47155 * 59.99735 * 11 10 9 14 14 C 1.38456 * 120.21825 * 0.02562 * 10 9 8 15 15 C 1.38207 * 120.33929 * 0.02562 * 14 10 9 16 16 C 1.38319 * 120.11918 * 359.70205 * 15 14 10 17 17 F 1.35097 * 120.11298 * 180.30495 * 16 15 14 18 18 C 1.47031 * 108.69958 * 24.13105 * 5 4 2 19 19 C 1.54322 * 107.27231 * 358.93928 * 18 5 4 20 20 H 1.08998 * 110.71708 * 96.34485 * 19 18 5 21 21 N 1.46493 * 110.72268 * 219.44763 * 19 18 5 22 22 C 1.36938 * 119.99765 * 273.54891 * 21 19 18 23 23 H 1.07996 * 120.00432 * 359.97438 * 22 21 19 24 24 C 1.38816 * 120.00175 * 179.97438 * 22 21 19 25 25 N 1.31622 * 119.99751 * 359.97438 * 24 22 21 26 26 Si 1.86792 * 120.00190 * 179.97438 * 24 22 21 27 27 H 1.48505 * 109.47015 * 90.00053 * 26 24 22 28 28 H 1.48505 * 109.47293 * 209.99862 * 26 24 22 29 29 H 1.48494 * 109.47442 * 330.00126 * 26 24 22 30 30 H 1.08995 * 109.46938 * 296.09483 * 1 2 3 31 31 H 1.08999 * 109.46812 * 56.09651 * 1 2 3 32 32 H 1.09001 * 109.47521 * 176.09035 * 1 2 3 33 33 H 1.09001 * 110.36743 * 86.08041 * 4 2 1 34 34 H 1.09000 * 110.46012 * 323.80353 * 4 2 1 35 35 H 1.08003 * 120.06066 * 359.95212 * 9 8 6 36 36 H 1.08995 * 109.47601 * 179.97438 * 11 10 9 37 37 H 1.08007 * 119.83077 * 179.97438 * 14 10 9 38 38 H 1.08003 * 119.94037 * 179.97438 * 15 14 10 39 39 H 1.09002 * 109.87722 * 239.52049 * 18 5 4 40 40 H 1.09000 * 109.87935 * 118.35849 * 18 5 4 41 41 H 0.96998 * 120.00643 * 93.26363 * 21 19 18 42 42 H 0.96997 * 120.00009 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9192 1.0181 0.0000 4 6 2.0852 -0.8066 -1.2004 5 7 3.4271 -1.2431 -0.7734 6 6 4.4476 -1.5617 -1.5941 7 8 4.2754 -1.5850 -2.7973 8 6 5.7752 -1.8822 -1.0317 9 6 5.8864 -2.7622 0.0471 10 6 7.1285 -3.0576 0.5671 11 6 7.2488 -4.0066 1.7315 12 9 6.5361 -3.4985 2.8228 13 9 6.7257 -5.2536 1.3728 14 6 8.2657 -2.4844 0.0237 15 6 8.1659 -1.6116 -1.0432 16 6 6.9272 -1.3097 -1.5795 17 9 6.8303 -0.4613 -2.6264 18 6 3.4674 -1.2743 0.6960 19 6 2.0861 -0.8081 1.2022 20 1 1.4478 -1.6634 1.4237 21 7 2.2286 0.0493 2.3814 22 6 2.3033 -0.5096 3.6293 23 1 2.2568 -1.5824 3.7442 24 6 2.4388 0.3027 4.7468 25 7 2.4960 1.6103 4.6068 26 14 2.5400 -0.4596 6.4490 27 1 3.9602 -0.7350 6.7844 28 1 1.9689 0.4801 7.4471 29 1 1.7715 -1.7301 6.4690 30 1 -0.3633 0.4520 0.9229 31 1 -0.3633 0.5732 -0.8529 32 1 -0.3634 -1.0253 -0.0701 33 1 2.1560 -0.1719 -2.0837 34 1 1.4524 -1.6703 -1.4044 35 1 5.0010 -3.2102 0.4734 36 1 8.2986 -4.1178 2.0026 37 1 9.2356 -2.7199 0.4363 38 1 9.0572 -1.1679 -1.4618 39 1 4.2426 -0.6000 1.0599 40 1 3.6649 -2.2896 1.0399 41 1 2.2741 1.0127 2.2781 42 1 2.5903 2.1779 5.3876 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054653602.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:40:43 Heat of formation + Delta-G solvation = -136.060680 kcal Electronic energy + Delta-G solvation = -30489.417873 eV Core-core repulsion = 25827.030093 eV Total energy + Delta-G solvation = -4662.387781 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.130 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.13751 -49.10132 -47.07765 -40.35272 -38.88441 -37.52036 -34.14588 -32.89061 -31.99180 -31.50217 -30.70616 -27.63247 -26.54121 -26.18137 -24.48885 -23.71718 -22.30732 -21.48581 -20.01944 -19.73125 -17.91140 -17.80975 -17.48900 -17.31122 -17.15881 -16.58681 -16.38748 -15.85272 -15.69285 -15.43514 -14.65737 -14.39693 -14.07251 -14.01221 -13.99104 -13.58370 -13.51841 -13.43209 -13.26675 -13.10316 -12.68077 -12.67061 -12.54699 -12.44065 -12.20931 -11.71539 -11.54936 -11.31299 -11.15445 -11.03601 -10.78356 -10.64089 -10.28017 -10.02655 -9.96426 -9.75104 -9.47323 -9.17551 -9.02338 -8.44314 -7.12635 -5.87168 -3.18262 0.44519 0.70542 2.55066 2.93362 3.25175 3.38953 3.44064 3.45179 3.45737 3.84384 3.92070 4.12878 4.38156 4.47738 4.51616 4.67748 4.85506 4.89002 4.97186 5.07589 5.16877 5.27747 5.40057 5.51848 5.56578 5.61275 5.66295 5.72715 5.77443 5.82945 5.86370 5.95192 6.14549 6.20968 6.29957 6.32365 6.42600 6.46663 6.56969 6.81855 7.59462 7.63632 8.14075 8.29923 9.42362 9.94830 10.29832 11.34636 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.008454 B = 0.004695 C = 0.003452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3311.268487 B = 5962.959350 C = 8108.535544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.113 4.113 3 H 0.085 0.915 4 C 0.115 3.885 5 N -0.603 5.603 6 C 0.572 3.428 7 O -0.536 6.536 8 C -0.157 4.157 9 C -0.017 4.017 10 C -0.188 4.188 11 C 0.316 3.684 12 F -0.189 7.189 13 F -0.199 7.199 14 C -0.038 4.038 15 C -0.163 4.163 16 C 0.169 3.831 17 F -0.119 7.119 18 C 0.066 3.934 19 C 0.178 3.822 20 H 0.068 0.932 21 N -0.710 5.710 22 C -0.248 4.248 23 H 0.073 0.927 24 C -0.006 4.006 25 N -0.929 5.929 26 Si 0.906 3.094 27 H -0.288 1.288 28 H -0.291 1.291 29 H -0.280 1.280 30 H 0.069 0.931 31 H 0.050 0.950 32 H 0.053 0.947 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.148 0.852 36 H 0.121 0.879 37 H 0.145 0.855 38 H 0.150 0.850 39 H 0.076 0.924 40 H 0.061 0.939 41 H 0.387 0.613 42 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.123 -8.613 -9.861 16.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.133 4.133 3 H 0.103 0.897 4 C -0.008 4.008 5 N -0.336 5.336 6 C 0.360 3.640 7 O -0.414 6.414 8 C -0.161 4.161 9 C -0.035 4.035 10 C -0.189 4.189 11 C 0.262 3.738 12 F -0.170 7.170 13 F -0.181 7.181 14 C -0.056 4.056 15 C -0.181 4.181 16 C 0.148 3.852 17 F -0.097 7.097 18 C -0.059 4.059 19 C 0.065 3.935 20 H 0.086 0.914 21 N -0.349 5.349 22 C -0.379 4.379 23 H 0.091 0.909 24 C -0.203 4.203 25 N -0.576 5.576 26 Si 0.737 3.263 27 H -0.215 1.215 28 H -0.217 1.217 29 H -0.206 1.206 30 H 0.088 0.912 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.092 0.908 34 H 0.087 0.913 35 H 0.165 0.835 36 H 0.138 0.862 37 H 0.163 0.837 38 H 0.167 0.833 39 H 0.095 0.905 40 H 0.079 0.921 41 H 0.222 0.778 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 10.014 -8.706 -10.365 16.838 hybrid contribution 0.157 0.076 0.913 0.929 sum 10.170 -8.630 -9.452 16.348 Atomic orbital electron populations 1.21607 0.93643 1.01629 1.02199 1.22633 0.96477 0.99812 0.94387 0.89702 1.22327 0.82196 0.98294 0.97943 1.48442 1.11861 1.65009 1.08267 1.17558 0.83023 0.77764 0.85696 1.90798 1.83483 1.53057 1.14073 1.19941 0.93503 1.02935 0.99684 1.21180 0.98045 0.93070 0.91225 1.20345 0.94704 1.03327 1.00488 1.20313 0.94410 0.77290 0.81802 1.93112 1.81290 1.87128 1.55458 1.93028 1.89242 1.43573 1.92222 1.20912 0.98083 0.93118 0.93518 1.21057 0.96385 1.01713 0.98994 1.17722 0.93172 0.89238 0.85057 1.91581 1.96929 1.67250 1.53914 1.23608 1.03953 1.01299 0.77059 1.21253 0.91298 0.93952 0.86973 0.91364 1.42356 1.86801 1.05291 1.00499 1.19229 1.43239 0.91943 0.83507 0.90942 1.24749 1.02220 0.95327 0.97986 1.69660 1.56410 1.02312 1.29241 0.86210 0.77769 0.78058 0.84277 1.21531 1.21742 1.20601 0.91215 0.93099 0.92771 0.90756 0.91254 0.83481 0.86177 0.83708 0.83264 0.90520 0.92080 0.77836 0.93344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.82 9.31 37.16 0.35 -1.48 16 2 C -0.11 -1.75 3.25 -88.47 -0.29 -2.04 16 3 H 0.08 1.40 8.00 -51.93 -0.42 0.98 16 4 C 0.11 1.71 6.36 -2.53 -0.02 1.69 16 5 N -0.60 -9.89 3.33 -171.68 -0.57 -10.46 16 6 C 0.57 9.86 7.21 -12.40 -0.09 9.77 16 7 O -0.54 -10.60 16.84 5.31 0.09 -10.51 16 8 C -0.16 -2.33 5.43 -104.91 -0.57 -2.90 16 9 C -0.02 -0.22 8.06 -39.19 -0.32 -0.54 16 10 C -0.19 -2.02 5.37 -104.69 -0.56 -2.58 16 11 C 0.32 3.11 5.45 36.00 0.20 3.31 16 12 F -0.19 -2.56 17.25 2.25 0.04 -2.52 16 13 F -0.20 -2.29 17.25 2.25 0.04 -2.25 16 14 C -0.04 -0.32 9.66 -39.51 -0.38 -0.70 16 15 C -0.16 -1.57 10.01 -39.56 -0.40 -1.97 16 16 C 0.17 2.28 7.25 -38.96 -0.28 1.99 16 17 F -0.12 -1.79 16.44 2.25 0.04 -1.76 16 18 C 0.07 1.14 5.38 -3.06 -0.02 1.12 16 19 C 0.18 3.24 3.06 -66.10 -0.20 3.04 16 20 H 0.07 1.25 8.02 -51.93 -0.42 0.83 16 21 N -0.71 -16.37 5.17 -51.65 -0.27 -16.64 16 22 C -0.25 -6.44 9.98 -15.06 -0.15 -6.59 16 23 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 24 C -0.01 -0.17 5.50 -17.43 -0.10 -0.26 16 25 N -0.93 -26.81 13.06 55.49 0.72 -26.09 16 26 Si 0.91 21.58 29.55 -169.99 -5.02 16.56 16 27 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 28 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 29 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 30 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.68 8.08 -51.93 -0.42 0.26 16 33 H 0.07 1.10 8.09 -51.93 -0.42 0.68 16 34 H 0.07 0.95 7.99 -51.93 -0.41 0.54 16 35 H 0.15 1.98 5.87 -52.48 -0.31 1.67 16 36 H 0.12 0.65 7.87 -51.93 -0.41 0.25 16 37 H 0.15 0.62 7.94 -52.48 -0.42 0.21 16 38 H 0.15 1.01 8.06 -52.48 -0.42 0.59 16 39 H 0.08 1.46 8.03 -51.93 -0.42 1.04 16 40 H 0.06 0.99 5.95 -51.93 -0.31 0.68 16 41 H 0.39 9.62 7.72 -40.82 -0.31 9.31 16 42 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 365.51 15.07 5.51 5.51 Total: -1.00 -31.98 365.51 -7.32 -39.30 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -5.07 Total: 6.98 kcal Atomic # 6 Polarization: 4.70 SS G_CDS: -2.82 Total: 1.87 kcal Atomic # 7 Polarization: -53.07 SS G_CDS: -0.11 Total: -53.18 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: 0.09 Total: -10.51 kcal Atomic # 9 Polarization: -6.63 SS G_CDS: 0.11 Total: -6.52 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.98 -7.32 -39.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054653602.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.759 kcal (2) G-P(sol) polarization free energy of solvation -31.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds