Wall clock time and date at job start Wed Apr 1 2020 02:42:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 110.78142 * 2 1 4 4 C 1.54322 * 110.72206 * 123.24592 * 2 1 3 5 5 N 1.47013 * 107.27579 * 140.55283 * 4 2 1 6 6 C 1.34776 * 125.65097 * 181.02451 * 5 4 2 7 7 O 1.21571 * 120.00379 * 174.36444 * 6 5 4 8 8 C 1.47694 * 120.00074 * 354.36520 * 6 5 4 9 9 C 1.39664 * 120.16363 * 7.03966 * 8 6 5 10 10 C 1.37853 * 119.87770 * 179.97438 * 9 8 6 11 11 C 1.50707 * 119.89207 * 179.97438 * 10 9 8 12 12 F 1.39896 * 109.46897 * 209.99769 * 11 10 9 13 13 F 1.39897 * 109.46535 * 329.99807 * 11 10 9 14 14 C 1.38461 * 120.21873 * 359.97384 * 10 9 8 15 15 C 1.38205 * 120.34100 * 0.02562 * 14 10 9 16 16 C 1.38326 * 120.11513 * 359.78152 * 15 14 10 17 17 F 1.35097 * 120.11112 * 180.26071 * 16 15 14 18 18 C 1.47423 * 108.70312 * 1.05405 * 5 4 2 19 19 C 1.54907 * 104.83164 * 335.87621 * 18 5 4 20 20 H 1.09007 * 111.00512 * 155.12187 * 19 18 5 21 21 N 1.46502 * 111.00326 * 278.93053 * 19 18 5 22 22 C 1.36943 * 119.99814 * 273.54957 * 21 19 18 23 23 H 1.07999 * 120.00126 * 359.97438 * 22 21 19 24 24 C 1.38808 * 119.99717 * 180.02562 * 22 21 19 25 25 N 1.31621 * 120.00001 * 179.97438 * 24 22 21 26 26 Si 1.86805 * 120.00119 * 0.26603 * 24 22 21 27 27 H 1.48494 * 109.47486 * 269.73240 * 26 24 22 28 28 H 1.48506 * 109.46828 * 29.73281 * 26 24 22 29 29 H 1.48500 * 109.46951 * 149.72571 * 26 24 22 30 30 H 1.09000 * 109.47835 * 183.23789 * 1 2 3 31 31 H 1.09009 * 109.46842 * 303.23931 * 1 2 3 32 32 H 1.09003 * 109.47311 * 63.23222 * 1 2 3 33 33 H 1.09002 * 109.88348 * 21.12894 * 4 2 1 34 34 H 1.09001 * 110.01128 * 260.04414 * 4 2 1 35 35 H 1.07996 * 120.06071 * 359.97438 * 9 8 6 36 36 H 1.08995 * 109.46617 * 90.00026 * 11 10 9 37 37 H 1.08000 * 119.83242 * 180.02562 * 14 10 9 38 38 H 1.08000 * 119.94573 * 180.02562 * 15 14 10 39 39 H 1.08998 * 110.36982 * 217.02985 * 18 5 4 40 40 H 1.09009 * 110.45587 * 94.75862 * 18 5 4 41 41 H 0.97000 * 119.99945 * 93.54857 * 21 19 18 42 42 H 0.96999 * 120.00074 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0190 0.0000 4 6 2.0760 -0.7913 1.2071 5 7 3.2444 -1.5508 0.7389 6 6 3.9922 -2.3838 1.4895 7 8 4.8756 -3.0400 0.9728 8 6 3.7384 -2.4995 2.9399 9 6 2.6349 -1.8628 3.5122 10 6 2.4034 -1.9751 4.8665 11 6 1.2131 -1.2878 5.4845 12 9 1.5083 -0.9442 6.8081 13 9 0.9138 -0.1305 4.7578 14 6 3.2608 -2.7174 5.6609 15 6 4.3555 -3.3511 5.1040 16 6 4.5988 -3.2510 3.7460 17 9 5.6660 -3.8749 3.2009 18 6 3.4631 -1.2499 -0.6877 19 6 2.0788 -0.7955 -1.2138 20 1 2.1848 -0.1524 -2.0876 21 7 1.2269 -1.9488 -1.5145 22 6 1.2980 -2.5509 -2.7424 23 1 1.9818 -2.1753 -3.4892 24 6 0.4905 -3.6433 -3.0275 25 7 0.5584 -4.2218 -4.2078 26 14 -0.6987 -4.2874 -1.7388 27 1 -0.0237 -5.3229 -0.9158 28 1 -1.1359 -3.1686 -0.8656 29 1 -1.8818 -4.8825 -2.4105 30 1 -0.3635 -1.0260 0.0580 31 1 -0.3633 0.5634 0.8596 32 1 -0.3634 0.4628 -0.9176 33 1 1.3129 -1.4759 1.5775 34 1 2.3736 -0.1046 1.9996 35 1 1.9643 -1.2836 2.8949 36 1 0.3555 -1.9603 5.4664 37 1 3.0732 -2.8015 6.7211 38 1 5.0199 -3.9288 5.7295 39 1 3.7959 -2.1427 -1.2170 40 1 4.1935 -0.4486 -0.8003 41 1 0.6125 -2.2858 -0.8439 42 1 -0.0056 -4.9854 -4.4069 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054653613.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:42:08 Heat of formation + Delta-G solvation = -106.785012 kcal Electronic energy + Delta-G solvation = -30823.392059 eV Core-core repulsion = 26162.273766 eV Total energy + Delta-G solvation = -4661.118292 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.130 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.39451 -49.06758 -47.40697 -40.58568 -38.91938 -37.66012 -34.30432 -32.57438 -32.07839 -31.89157 -30.81130 -28.32480 -26.79212 -26.19872 -24.60471 -23.52787 -22.44192 -21.79019 -20.10840 -19.43637 -18.13751 -17.90096 -17.78743 -17.53108 -17.50595 -16.61815 -16.41410 -16.18786 -15.75981 -15.11826 -14.74049 -14.45397 -14.33203 -14.18527 -13.95655 -13.87956 -13.70821 -13.50013 -13.26219 -13.14042 -12.89614 -12.75165 -12.69078 -12.38025 -12.29910 -11.79514 -11.61817 -11.54365 -11.41588 -11.07538 -10.84403 -10.59906 -10.34971 -10.05985 -9.78429 -9.62760 -9.56697 -9.20095 -9.10142 -8.43057 -7.35692 -5.83638 -3.20425 0.31880 0.60316 2.56342 3.00957 3.24586 3.27243 3.33325 3.39250 3.39505 3.72433 3.86979 3.98899 4.31143 4.37857 4.49014 4.51654 4.51946 4.69688 4.86946 4.90972 5.02546 5.21663 5.23880 5.32472 5.36671 5.45686 5.50967 5.58523 5.62960 5.68947 5.74693 5.93600 6.01383 6.06981 6.15250 6.26737 6.35017 6.50030 6.55661 6.67010 7.63066 7.90778 8.24405 8.35014 9.11675 9.83843 10.01654 11.34369 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.011333 B = 0.004061 C = 0.003616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2469.972989 B = 6893.766729 C = 7741.152407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.116 4.116 3 H 0.090 0.910 4 C 0.091 3.909 5 N -0.597 5.597 6 C 0.567 3.433 7 O -0.522 6.522 8 C -0.163 4.163 9 C -0.066 4.066 10 C -0.195 4.195 11 C 0.318 3.682 12 F -0.199 7.199 13 F -0.196 7.196 14 C -0.037 4.037 15 C -0.167 4.167 16 C 0.177 3.823 17 F -0.109 7.109 18 C 0.078 3.922 19 C 0.177 3.823 20 H 0.083 0.917 21 N -0.734 5.734 22 C -0.249 4.249 23 H 0.093 0.907 24 C 0.011 3.989 25 N -0.929 5.929 26 Si 0.879 3.121 27 H -0.285 1.285 28 H -0.277 1.277 29 H -0.289 1.289 30 H 0.060 0.940 31 H 0.051 0.949 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.180 0.820 36 H 0.127 0.873 37 H 0.145 0.855 38 H 0.149 0.851 39 H 0.090 0.910 40 H 0.061 0.939 41 H 0.362 0.638 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.507 8.705 22.943 24.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.135 4.135 3 H 0.108 0.892 4 C -0.031 4.031 5 N -0.330 5.330 6 C 0.355 3.645 7 O -0.399 6.399 8 C -0.167 4.167 9 C -0.083 4.083 10 C -0.196 4.196 11 C 0.264 3.736 12 F -0.180 7.180 13 F -0.177 7.177 14 C -0.056 4.056 15 C -0.185 4.185 16 C 0.156 3.844 17 F -0.086 7.086 18 C -0.047 4.047 19 C 0.065 3.935 20 H 0.101 0.899 21 N -0.376 5.376 22 C -0.378 4.378 23 H 0.111 0.889 24 C -0.185 4.185 25 N -0.576 5.576 26 Si 0.709 3.291 27 H -0.211 1.211 28 H -0.203 1.203 29 H -0.216 1.216 30 H 0.079 0.921 31 H 0.070 0.930 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.196 0.804 36 H 0.144 0.856 37 H 0.163 0.837 38 H 0.167 0.833 39 H 0.109 0.891 40 H 0.079 0.921 41 H 0.196 0.804 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.107 8.231 22.407 23.964 hybrid contribution -0.615 -0.735 0.948 1.348 sum 1.492 7.497 23.355 24.574 Atomic orbital electron populations 1.21675 0.93461 1.02460 1.01866 1.22584 0.97025 0.99196 0.94728 0.89168 1.22612 0.88120 0.94673 0.97734 1.48187 1.29009 1.43508 1.12283 1.17499 0.82199 0.79820 0.84970 1.90856 1.32528 1.43477 1.73047 1.20112 0.98285 1.03462 0.94814 1.22575 0.95885 0.95223 0.94637 1.20420 0.99542 1.04478 0.95123 1.20252 0.96421 0.83310 0.73604 1.93000 1.94911 1.93403 1.36661 1.93017 1.94271 1.52853 1.77557 1.20942 0.91718 0.92565 1.00357 1.21120 1.00455 1.04043 0.92926 1.17850 0.84206 0.91262 0.91095 1.91628 1.52008 1.78903 1.86099 1.23357 1.00352 1.01678 0.79276 1.21361 0.88299 0.89210 0.94601 0.89945 1.42695 1.45722 1.34168 1.14996 1.19047 1.19548 1.09372 0.89841 0.88911 1.24639 0.99491 0.98086 0.96324 1.69688 1.42721 1.24480 1.20694 0.86656 0.81641 0.78972 0.81806 1.21135 1.20291 1.21567 0.92113 0.93043 0.91393 0.90919 0.90735 0.80382 0.85620 0.83723 0.83310 0.89141 0.92076 0.80351 0.92945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 8.71 37.16 0.32 -1.42 16 2 C -0.12 -1.49 3.42 -88.79 -0.30 -1.79 16 3 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 4 C 0.09 1.16 4.46 -3.07 -0.01 1.15 16 5 N -0.60 -9.77 3.33 -175.86 -0.58 -10.35 16 6 C 0.57 10.16 7.80 -12.40 -0.10 10.07 16 7 O -0.52 -11.41 15.60 5.30 0.08 -11.33 16 8 C -0.16 -2.32 5.88 -104.91 -0.62 -2.94 16 9 C -0.07 -0.73 7.95 -39.19 -0.31 -1.05 16 10 C -0.19 -1.75 5.73 -104.68 -0.60 -2.35 16 11 C 0.32 2.33 5.65 36.01 0.20 2.53 16 12 F -0.20 -1.63 16.47 2.25 0.04 -1.59 16 13 F -0.20 -1.76 16.47 2.25 0.04 -1.72 16 14 C -0.04 -0.30 9.39 -39.51 -0.37 -0.67 16 15 C -0.17 -1.57 10.01 -39.56 -0.40 -1.96 16 16 C 0.18 2.36 7.28 -38.96 -0.28 2.08 16 17 F -0.11 -1.72 15.58 2.25 0.04 -1.68 16 18 C 0.08 1.36 6.63 -2.53 -0.02 1.35 16 19 C 0.18 3.04 3.44 -65.78 -0.23 2.81 16 20 H 0.08 1.40 8.13 -51.92 -0.42 0.97 16 21 N -0.73 -16.04 4.54 -51.35 -0.23 -16.28 16 22 C -0.25 -6.70 10.47 -15.06 -0.16 -6.86 16 23 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 24 C 0.01 0.31 5.50 -17.43 -0.10 0.22 16 25 N -0.93 -28.76 13.97 55.49 0.78 -27.98 16 26 Si 0.88 21.62 27.74 -169.99 -4.71 16.90 16 27 H -0.28 -7.17 7.11 56.52 0.40 -6.76 16 28 H -0.28 -6.17 6.52 56.52 0.37 -5.81 16 29 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 30 H 0.06 0.90 6.35 -51.93 -0.33 0.57 16 31 H 0.05 0.51 8.14 -51.92 -0.42 0.09 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.07 0.90 6.36 -51.93 -0.33 0.57 16 34 H 0.07 0.77 6.73 -51.93 -0.35 0.42 16 35 H 0.18 1.86 2.28 -57.88 -0.13 1.73 16 36 H 0.13 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.15 0.77 7.59 -52.49 -0.40 0.37 16 38 H 0.15 1.01 8.06 -52.49 -0.42 0.59 16 39 H 0.09 1.93 7.99 -51.93 -0.41 1.52 16 40 H 0.06 0.93 8.14 -51.92 -0.42 0.51 16 41 H 0.36 7.86 3.94 -40.82 -0.16 7.69 16 42 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 LS Contribution 351.25 15.07 5.29 5.29 Total: -1.00 -34.27 351.25 -6.90 -41.17 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -4.67 Total: 6.40 kcal Atomic # 6 Polarization: 4.13 SS G_CDS: -2.96 Total: 1.16 kcal Atomic # 7 Polarization: -54.57 SS G_CDS: -0.04 Total: -54.61 kcal Atomic # 8 Polarization: -11.41 SS G_CDS: 0.08 Total: -11.33 kcal Atomic # 9 Polarization: -5.11 SS G_CDS: 0.11 Total: -5.00 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.71 Total: 16.90 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.27 -6.90 -41.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054653613.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.613 kcal (2) G-P(sol) polarization free energy of solvation -34.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds