Wall clock time and date at job start Wed Apr 1 2020 02:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 110.77756 * 2 1 4 4 C 1.54327 * 110.71994 * 123.23227 * 2 1 3 5 5 N 1.47016 * 107.27062 * 140.55841 * 4 2 1 6 6 C 1.34775 * 125.64789 * 181.01555 * 5 4 2 7 7 O 1.21570 * 119.99942 * 174.39316 * 6 5 4 8 8 C 1.47695 * 120.00262 * 354.39094 * 6 5 4 9 9 C 1.39665 * 120.16336 * 7.08615 * 8 6 5 10 10 C 1.37856 * 119.87554 * 179.72222 * 9 8 6 11 11 C 1.38463 * 120.21814 * 0.55648 * 10 9 8 12 12 C 1.38203 * 120.33707 * 359.71533 * 11 10 9 13 13 C 1.50703 * 119.93808 * 179.97438 * 12 11 10 14 14 F 1.39897 * 109.47212 * 120.02580 * 13 12 11 15 15 F 1.39898 * 109.46912 * 240.02757 * 13 12 11 16 16 C 1.38315 * 120.11947 * 0.02562 * 12 11 10 17 17 F 1.35100 * 120.10999 * 180.02562 * 16 12 11 18 18 C 1.47422 * 108.70350 * 1.05671 * 5 4 2 19 19 C 1.54908 * 104.83555 * 335.87357 * 18 5 4 20 20 H 1.09005 * 111.00568 * 278.93378 * 19 18 5 21 21 N 1.46501 * 111.00756 * 155.07886 * 19 18 5 22 22 C 1.36940 * 119.99575 * 92.80335 * 21 19 18 23 23 H 1.07996 * 119.99888 * 0.02562 * 22 21 19 24 24 C 1.38811 * 119.99905 * 180.02562 * 22 21 19 25 25 N 1.31630 * 119.99899 * 0.02562 * 24 22 21 26 26 Si 1.86793 * 120.00157 * 179.97438 * 24 22 21 27 27 H 1.48495 * 109.47233 * 0.02562 * 26 24 22 28 28 H 1.48502 * 109.47175 * 120.00017 * 26 24 22 29 29 H 1.48501 * 109.47274 * 240.00016 * 26 24 22 30 30 H 1.09001 * 109.46872 * 183.24510 * 1 2 3 31 31 H 1.08999 * 109.47275 * 303.24412 * 1 2 3 32 32 H 1.08995 * 109.46864 * 63.24602 * 1 2 3 33 33 H 1.09003 * 109.88353 * 259.97666 * 4 2 1 34 34 H 1.09007 * 109.88014 * 21.14159 * 4 2 1 35 35 H 1.08003 * 120.05775 * 359.97438 * 9 8 6 36 36 H 1.07998 * 119.88505 * 180.27739 * 10 9 8 37 37 H 1.07996 * 119.82481 * 179.70028 * 11 10 9 38 38 H 1.09003 * 109.47057 * 0.02562 * 13 12 11 39 39 H 1.08997 * 110.36879 * 217.03263 * 18 5 4 40 40 H 1.09004 * 110.45786 * 94.75820 * 18 5 4 41 41 H 0.96993 * 120.00084 * 272.80962 * 21 19 18 42 42 H 0.96995 * 119.99972 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0761 -0.7911 1.2074 5 7 3.2445 -1.5506 0.7392 6 6 3.9924 -2.3832 1.4901 7 8 4.8762 -3.0390 0.9736 8 6 3.7384 -2.4989 2.9404 9 6 2.6339 -1.8635 3.5123 10 6 2.3993 -1.9801 4.8657 11 6 3.2611 -2.7156 5.6616 12 6 4.3598 -3.3435 5.1060 13 6 5.2924 -4.1412 5.9807 14 9 5.3233 -5.4687 5.5405 15 9 6.5789 -3.5962 5.9096 16 6 4.6057 -3.2401 3.7488 17 9 5.6795 -3.8543 3.2058 18 6 3.4633 -1.2498 -0.6873 19 6 2.0790 -0.7956 -1.2137 20 1 1.4452 -1.6537 -1.4373 21 7 2.2215 0.0694 -2.3875 22 6 2.1868 -0.4717 -3.6449 23 1 2.0541 -1.5360 -3.7713 24 6 2.3223 0.3477 -4.7571 25 7 2.4847 1.6449 -4.6030 26 14 2.2758 -0.3904 -6.4724 27 1 2.0849 -1.8597 -6.3740 28 1 1.1502 0.2044 -7.2369 29 1 3.5547 -0.1026 -7.1701 30 1 -0.3633 -1.0260 0.0582 31 1 -0.3634 0.5634 0.8595 32 1 -0.3633 0.4626 -0.9176 33 1 2.3741 -0.1022 1.9978 34 1 1.3129 -1.4757 1.5777 35 1 1.9628 -1.2851 2.8947 36 1 1.5428 -1.4925 5.3074 37 1 3.0739 -2.7988 6.7220 38 1 4.9404 -4.1084 7.0118 39 1 3.7960 -2.1427 -1.2166 40 1 4.1936 -0.4485 -0.8001 41 1 2.3404 1.0253 -2.2739 42 1 2.5797 2.2174 -5.3802 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054668756.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:43:17 Heat of formation + Delta-G solvation = -113.544826 kcal Electronic energy + Delta-G solvation = -29857.939936 eV Core-core repulsion = 25196.528516 eV Total energy + Delta-G solvation = -4661.411420 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.130 amu Computer time = 7.85 seconds Orbital eigenvalues (eV) -49.55044 -48.85559 -47.30024 -40.58514 -38.89307 -37.59231 -34.42680 -32.98714 -32.29386 -31.16802 -30.77200 -28.03930 -26.86820 -26.15252 -24.70548 -23.52745 -22.41766 -21.55792 -20.29074 -19.88316 -18.06359 -17.94951 -17.59624 -17.57703 -17.17961 -16.42841 -16.19710 -16.14076 -15.76730 -15.24596 -15.08340 -14.60059 -14.20191 -14.16853 -13.86759 -13.70894 -13.65728 -13.28845 -13.13883 -13.05765 -12.92328 -12.89725 -12.60612 -12.47016 -12.36625 -11.83314 -11.68489 -11.37565 -11.13517 -11.04826 -10.78424 -10.64577 -10.27216 -10.00690 -9.84749 -9.77918 -9.69284 -9.22837 -9.05941 -8.47324 -7.12836 -5.88370 -3.19241 0.26448 0.54075 2.53383 2.89641 3.23409 3.33989 3.38729 3.45777 3.47158 3.61077 3.77693 4.03347 4.21755 4.40999 4.48668 4.56243 4.61397 4.65077 4.76252 4.94177 4.96613 5.17278 5.29828 5.38898 5.40894 5.49709 5.58339 5.59761 5.70622 5.74828 5.77968 5.91367 6.07181 6.16513 6.20802 6.30675 6.38578 6.50040 6.53185 6.80522 7.58336 7.62739 8.17531 8.29068 9.41428 9.93207 10.28132 11.33498 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.021378 B = 0.002514 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.420466 B =11134.397426 C =12042.030577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.117 4.117 3 H 0.088 0.912 4 C 0.093 3.907 5 N -0.604 5.604 6 C 0.565 3.435 7 O -0.525 6.525 8 C -0.165 4.165 9 C -0.076 4.076 10 C -0.142 4.142 11 C -0.037 4.037 12 C -0.226 4.226 13 C 0.319 3.681 14 F -0.195 7.195 15 F -0.195 7.195 16 C 0.196 3.804 17 F -0.102 7.102 18 C 0.080 3.920 19 C 0.178 3.822 20 H 0.070 0.930 21 N -0.708 5.708 22 C -0.248 4.248 23 H 0.073 0.927 24 C -0.008 4.008 25 N -0.929 5.929 26 Si 0.908 3.092 27 H -0.279 1.279 28 H -0.291 1.291 29 H -0.290 1.290 30 H 0.053 0.947 31 H 0.050 0.950 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.178 0.822 36 H 0.144 0.856 37 H 0.143 0.857 38 H 0.126 0.874 39 H 0.075 0.925 40 H 0.070 0.930 41 H 0.387 0.613 42 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.443 -5.812 26.293 27.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.137 4.137 3 H 0.106 0.894 4 C -0.029 4.029 5 N -0.338 5.338 6 C 0.353 3.647 7 O -0.402 6.402 8 C -0.170 4.170 9 C -0.094 4.094 10 C -0.161 4.161 11 C -0.056 4.056 12 C -0.228 4.228 13 C 0.265 3.735 14 F -0.176 7.176 15 F -0.176 7.176 16 C 0.175 3.825 17 F -0.080 7.080 18 C -0.045 4.045 19 C 0.065 3.935 20 H 0.088 0.912 21 N -0.347 5.347 22 C -0.379 4.379 23 H 0.091 0.909 24 C -0.204 4.204 25 N -0.577 5.577 26 Si 0.739 3.261 27 H -0.204 1.204 28 H -0.218 1.218 29 H -0.217 1.217 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.195 0.805 36 H 0.162 0.838 37 H 0.161 0.839 38 H 0.143 0.857 39 H 0.093 0.907 40 H 0.089 0.911 41 H 0.222 0.778 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -2.848 -6.348 25.794 26.716 hybrid contribution 0.474 -0.154 -0.984 1.103 sum -2.374 -6.502 24.811 25.758 Atomic orbital electron populations 1.21685 0.93675 1.01594 1.02359 1.22596 0.96609 1.00029 0.94452 0.89393 1.22633 0.87786 0.94599 0.97928 1.48327 1.29295 1.43433 1.12716 1.17577 0.82067 0.79989 0.85050 1.90860 1.32221 1.43976 1.73159 1.20155 0.98473 1.03642 0.94694 1.23002 0.95234 0.94790 0.96347 1.21211 1.00659 1.00685 0.93499 1.21033 0.91119 0.92799 1.00613 1.20466 1.01530 1.07623 0.93134 1.20267 0.79248 0.75567 0.98390 1.93051 1.96502 1.36264 1.91788 1.93051 1.41271 1.85653 1.97648 1.17459 0.84044 0.91023 0.89971 1.91654 1.51254 1.79142 1.85929 1.23540 1.02087 1.01265 0.77603 1.21381 0.91842 0.93656 0.86632 0.91216 1.42284 1.86087 1.06210 1.00146 1.19300 1.42784 0.92788 0.83037 0.90864 1.24766 1.02137 0.95451 0.98066 1.69668 1.55959 1.02751 1.29278 0.86106 0.77255 0.78254 0.84496 1.20404 1.21764 1.21723 0.92818 0.93118 0.91052 0.90837 0.90512 0.80548 0.83838 0.83888 0.85698 0.90653 0.91147 0.77834 0.93365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 9.16 37.16 0.34 -1.26 16 2 C -0.12 -1.58 3.19 -88.78 -0.28 -1.87 16 3 H 0.09 1.23 8.00 -51.93 -0.42 0.82 16 4 C 0.09 1.06 4.46 -3.07 -0.01 1.04 16 5 N -0.60 -9.37 3.33 -175.83 -0.58 -9.96 16 6 C 0.57 9.58 7.80 -12.40 -0.10 9.49 16 7 O -0.52 -11.12 15.60 5.30 0.08 -11.04 16 8 C -0.17 -2.19 5.88 -104.91 -0.62 -2.81 16 9 C -0.08 -0.68 8.61 -39.19 -0.34 -1.02 16 10 C -0.14 -0.88 10.03 -39.64 -0.40 -1.27 16 11 C -0.04 -0.23 9.66 -39.51 -0.38 -0.61 16 12 C -0.23 -2.19 5.37 -104.61 -0.56 -2.75 16 13 C 0.32 2.78 5.16 36.01 0.19 2.96 16 14 F -0.19 -2.21 17.07 2.25 0.04 -2.17 16 15 F -0.20 -2.21 17.07 2.25 0.04 -2.17 16 16 C 0.20 2.68 7.10 -38.96 -0.28 2.40 16 17 F -0.10 -1.73 14.77 2.25 0.03 -1.70 16 18 C 0.08 1.47 6.63 -2.53 -0.02 1.45 16 19 C 0.18 3.22 3.16 -65.78 -0.21 3.01 16 20 H 0.07 1.30 8.00 -51.93 -0.42 0.89 16 21 N -0.71 -16.38 5.24 -51.35 -0.27 -16.64 16 22 C -0.25 -6.55 9.96 -15.06 -0.15 -6.70 16 23 H 0.07 1.91 7.83 -52.49 -0.41 1.49 16 24 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 25 N -0.93 -26.92 13.06 55.49 0.72 -26.19 16 26 Si 0.91 21.87 29.55 -169.99 -5.02 16.85 16 27 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 28 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 29 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 30 H 0.05 0.59 8.06 -51.93 -0.42 0.17 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.07 0.67 6.74 -51.93 -0.35 0.32 16 34 H 0.08 0.70 6.36 -51.92 -0.33 0.37 16 35 H 0.18 1.30 2.75 -57.86 -0.16 1.14 16 36 H 0.14 0.41 8.06 -52.49 -0.42 -0.01 16 37 H 0.14 0.31 7.93 -52.49 -0.42 -0.11 16 38 H 0.13 0.45 7.87 -51.93 -0.41 0.05 16 39 H 0.07 1.54 7.99 -51.93 -0.41 1.12 16 40 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 41 H 0.39 9.48 7.76 -40.82 -0.32 9.16 16 42 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 358.79 15.07 5.41 5.41 Total: -1.00 -34.08 358.79 -7.35 -41.42 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -4.88 Total: 4.42 kcal Atomic # 6 Polarization: 4.68 SS G_CDS: -2.91 Total: 1.77 kcal Atomic # 7 Polarization: -52.67 SS G_CDS: -0.13 Total: -52.79 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: 0.08 Total: -11.04 kcal Atomic # 9 Polarization: -6.15 SS G_CDS: 0.11 Total: -6.04 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.08 -7.35 -41.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054668756.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.120 kcal (2) G-P(sol) polarization free energy of solvation -34.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.85 seconds