Wall clock time and date at job start Wed Apr 1 2020 02:43:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 110.77756 * 2 1 4 4 C 1.54327 * 110.71994 * 123.23227 * 2 1 3 5 5 N 1.47016 * 107.27062 * 140.55841 * 4 2 1 6 6 C 1.34775 * 125.64789 * 181.01555 * 5 4 2 7 7 O 1.21570 * 119.99942 * 174.39316 * 6 5 4 8 8 C 1.47695 * 120.00262 * 354.39094 * 6 5 4 9 9 C 1.39665 * 120.16336 * 7.08615 * 8 6 5 10 10 C 1.37856 * 119.87554 * 179.72222 * 9 8 6 11 11 C 1.38463 * 120.21814 * 0.55648 * 10 9 8 12 12 C 1.38203 * 120.33707 * 359.71533 * 11 10 9 13 13 C 1.50703 * 119.93808 * 179.97438 * 12 11 10 14 14 F 1.39897 * 109.47212 * 120.02580 * 13 12 11 15 15 F 1.39898 * 109.46912 * 240.02757 * 13 12 11 16 16 C 1.38315 * 120.11947 * 0.02562 * 12 11 10 17 17 F 1.35100 * 120.10999 * 180.02562 * 16 12 11 18 18 C 1.47422 * 108.70350 * 1.05671 * 5 4 2 19 19 C 1.54908 * 104.83555 * 335.87357 * 18 5 4 20 20 H 1.09005 * 111.00568 * 278.93378 * 19 18 5 21 21 N 1.46501 * 111.00756 * 155.07886 * 19 18 5 22 22 C 1.36940 * 119.99575 * 92.80335 * 21 19 18 23 23 H 1.07996 * 119.99888 * 0.02562 * 22 21 19 24 24 C 1.38811 * 119.99905 * 180.02562 * 22 21 19 25 25 N 1.31630 * 119.99899 * 0.02562 * 24 22 21 26 26 Si 1.86793 * 120.00157 * 179.97438 * 24 22 21 27 27 H 1.48495 * 109.47233 * 0.02562 * 26 24 22 28 28 H 1.48502 * 109.47175 * 120.00017 * 26 24 22 29 29 H 1.48501 * 109.47274 * 240.00016 * 26 24 22 30 30 H 1.09001 * 109.46872 * 183.24510 * 1 2 3 31 31 H 1.08999 * 109.47275 * 303.24412 * 1 2 3 32 32 H 1.08995 * 109.46864 * 63.24602 * 1 2 3 33 33 H 1.09003 * 109.88353 * 259.97666 * 4 2 1 34 34 H 1.09007 * 109.88014 * 21.14159 * 4 2 1 35 35 H 1.08003 * 120.05775 * 359.97438 * 9 8 6 36 36 H 1.07998 * 119.88505 * 180.27739 * 10 9 8 37 37 H 1.07996 * 119.82481 * 179.70028 * 11 10 9 38 38 H 1.09003 * 109.47057 * 0.02562 * 13 12 11 39 39 H 1.08997 * 110.36879 * 217.03263 * 18 5 4 40 40 H 1.09004 * 110.45786 * 94.75820 * 18 5 4 41 41 H 0.96993 * 120.00084 * 272.80962 * 21 19 18 42 42 H 0.96995 * 119.99972 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0761 -0.7911 1.2074 5 7 3.2445 -1.5506 0.7392 6 6 3.9924 -2.3832 1.4901 7 8 4.8762 -3.0390 0.9736 8 6 3.7384 -2.4989 2.9404 9 6 2.6339 -1.8635 3.5123 10 6 2.3993 -1.9801 4.8657 11 6 3.2611 -2.7156 5.6616 12 6 4.3598 -3.3435 5.1060 13 6 5.2924 -4.1412 5.9807 14 9 5.3233 -5.4687 5.5405 15 9 6.5789 -3.5962 5.9096 16 6 4.6057 -3.2401 3.7488 17 9 5.6795 -3.8543 3.2058 18 6 3.4633 -1.2498 -0.6873 19 6 2.0790 -0.7956 -1.2137 20 1 1.4452 -1.6537 -1.4373 21 7 2.2215 0.0694 -2.3875 22 6 2.1868 -0.4717 -3.6449 23 1 2.0541 -1.5360 -3.7713 24 6 2.3223 0.3477 -4.7571 25 7 2.4847 1.6449 -4.6030 26 14 2.2758 -0.3904 -6.4724 27 1 2.0849 -1.8597 -6.3740 28 1 1.1502 0.2044 -7.2369 29 1 3.5547 -0.1026 -7.1701 30 1 -0.3633 -1.0260 0.0582 31 1 -0.3634 0.5634 0.8595 32 1 -0.3633 0.4626 -0.9176 33 1 2.3741 -0.1022 1.9978 34 1 1.3129 -1.4757 1.5777 35 1 1.9628 -1.2851 2.8947 36 1 1.5428 -1.4925 5.3074 37 1 3.0739 -2.7988 6.7220 38 1 4.9404 -4.1084 7.0118 39 1 3.7960 -2.1427 -1.2166 40 1 4.1936 -0.4485 -0.8001 41 1 2.3404 1.0253 -2.2739 42 1 2.5797 2.2174 -5.3802 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054668756.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:43:00 Heat of formation + Delta-G solvation = -136.726479 kcal Electronic energy + Delta-G solvation = -29858.945168 eV Core-core repulsion = 25196.528516 eV Total energy + Delta-G solvation = -4662.416652 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.130 amu Computer time = 13.13 seconds Orbital eigenvalues (eV) -50.41587 -49.74762 -48.05557 -41.69554 -39.77934 -38.92485 -36.11164 -34.22191 -33.34091 -32.47026 -31.87208 -29.51606 -27.80753 -27.01067 -26.15619 -24.88644 -23.18666 -22.77969 -21.48638 -21.11909 -19.32631 -18.82621 -18.79228 -18.32250 -18.29649 -17.59664 -17.22456 -17.15286 -16.88037 -16.40614 -16.20468 -15.85725 -15.60822 -15.42869 -14.95233 -14.69808 -14.67540 -14.44903 -14.43252 -14.21945 -14.09023 -13.94364 -13.48235 -13.39617 -13.17973 -13.03294 -12.92847 -12.89488 -12.67032 -12.23132 -12.14460 -12.06311 -11.93511 -11.68725 -11.33966 -11.10623 -10.94962 -10.41821 -10.04377 -9.72885 -9.08909 -7.99895 -5.29233 -0.46734 -0.17562 1.44733 1.46860 1.55565 1.58509 1.72204 2.45054 2.52638 2.61541 2.94498 3.14823 3.16456 3.32883 3.45237 3.59350 3.76463 3.86133 3.95036 3.96379 4.05411 4.13840 4.17778 4.26205 4.40397 4.47550 4.48981 4.60615 4.76114 4.81914 4.84880 4.89089 5.03417 5.04973 5.12667 5.16083 5.21117 5.36435 5.49987 5.55082 5.64045 6.22206 6.35587 6.90734 7.29914 8.00654 8.25114 9.22728 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.021378 B = 0.002514 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.420466 B =11134.397426 C =12042.030577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.105 4.105 3 H 0.084 0.916 4 C 0.093 3.907 5 N -0.603 5.603 6 C 0.556 3.444 7 O -0.588 6.588 8 C -0.192 4.192 9 C -0.071 4.071 10 C -0.121 4.121 11 C -0.013 4.013 12 C -0.230 4.230 13 C 0.306 3.694 14 F -0.217 7.217 15 F -0.217 7.217 16 C 0.147 3.853 17 F -0.140 7.140 18 C 0.088 3.912 19 C 0.173 3.827 20 H 0.065 0.935 21 N -0.718 5.718 22 C -0.245 4.245 23 H 0.072 0.928 24 C -0.066 4.066 25 N -0.963 5.963 26 Si 0.967 3.033 27 H -0.270 1.270 28 H -0.288 1.288 29 H -0.296 1.296 30 H 0.065 0.935 31 H 0.090 0.910 32 H 0.041 0.959 33 H 0.111 0.889 34 H 0.114 0.886 35 H 0.195 0.805 36 H 0.196 0.804 37 H 0.200 0.800 38 H 0.190 0.810 39 H 0.041 0.959 40 H 0.050 0.950 41 H 0.379 0.621 42 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.701 -5.349 30.889 32.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.125 4.125 3 H 0.102 0.898 4 C -0.028 4.028 5 N -0.335 5.335 6 C 0.347 3.653 7 O -0.470 6.470 8 C -0.196 4.196 9 C -0.088 4.088 10 C -0.138 4.138 11 C -0.031 4.031 12 C -0.232 4.232 13 C 0.253 3.747 14 F -0.198 7.198 15 F -0.198 7.198 16 C 0.126 3.874 17 F -0.118 7.118 18 C -0.038 4.038 19 C 0.061 3.939 20 H 0.083 0.917 21 N -0.356 5.356 22 C -0.377 4.377 23 H 0.090 0.910 24 C -0.259 4.259 25 N -0.612 5.612 26 Si 0.797 3.203 27 H -0.195 1.195 28 H -0.215 1.215 29 H -0.224 1.224 30 H 0.084 0.916 31 H 0.109 0.891 32 H 0.060 0.940 33 H 0.129 0.871 34 H 0.132 0.868 35 H 0.211 0.789 36 H 0.213 0.787 37 H 0.217 0.783 38 H 0.207 0.793 39 H 0.060 0.940 40 H 0.068 0.932 41 H 0.212 0.788 42 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -6.149 -5.899 30.442 31.612 hybrid contribution 1.453 -0.321 -2.258 2.704 sum -4.697 -6.221 28.184 29.242 Atomic orbital electron populations 1.21658 0.91624 1.02780 1.02649 1.22516 0.98165 0.99269 0.92536 0.89773 1.23016 0.86883 0.95332 0.97574 1.48319 1.30415 1.43562 1.11157 1.18362 0.81068 0.78960 0.86951 1.90810 1.34943 1.46542 1.74712 1.19946 1.01127 1.06617 0.91921 1.23216 0.93494 0.93977 0.98155 1.21845 1.01281 0.98850 0.91829 1.21754 0.88395 0.89658 1.03268 1.20828 1.02996 1.08043 0.91360 1.21121 0.78219 0.74162 1.01161 1.93004 1.96515 1.37949 1.92327 1.93004 1.43037 1.85912 1.97859 1.18116 0.84181 0.92932 0.92135 1.91548 1.53235 1.80256 1.86783 1.23107 1.01695 0.98970 0.80017 1.21539 0.91512 0.93755 0.87055 0.91721 1.42368 1.86246 1.06284 1.00717 1.19599 1.40805 0.92742 0.84573 0.91017 1.25474 1.03163 0.95926 1.01364 1.69793 1.57954 1.03769 1.29734 0.85172 0.76707 0.77946 0.80520 1.19472 1.21512 1.22387 0.91645 0.89108 0.94014 0.87103 0.86845 0.78891 0.78663 0.78287 0.79302 0.94037 0.93208 0.78830 0.93857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.65 9.16 71.98 0.66 -1.99 16 2 C -0.11 -2.66 3.19 -9.60 -0.03 -2.69 16 3 H 0.08 2.23 8.00 -2.39 -0.02 2.21 16 4 C 0.09 1.81 4.46 86.73 0.39 2.20 16 5 N -0.60 -18.92 3.33 -828.49 -2.76 -21.68 16 6 C 0.56 19.77 7.80 86.74 0.68 20.45 16 7 O -0.59 -27.41 15.60 -3.94 -0.06 -27.47 16 8 C -0.19 -4.97 5.88 -20.05 -0.12 -5.08 16 9 C -0.07 -0.94 8.61 22.52 0.19 -0.75 16 10 C -0.12 -0.61 10.03 22.23 0.22 -0.39 16 11 C -0.01 -0.07 9.66 22.32 0.22 0.14 16 12 C -0.23 -3.83 5.37 -19.85 -0.11 -3.94 16 13 C 0.31 4.60 5.16 71.24 0.37 4.97 16 14 F -0.22 -4.80 17.07 44.97 0.77 -4.04 16 15 F -0.22 -4.81 17.07 44.97 0.77 -4.04 16 16 C 0.15 4.06 7.10 22.67 0.16 4.23 16 17 F -0.14 -5.22 14.77 44.97 0.66 -4.56 16 18 C 0.09 3.47 6.63 86.86 0.58 4.04 16 19 C 0.17 6.40 3.16 46.38 0.15 6.55 16 20 H 0.06 2.47 8.00 -2.38 -0.02 2.45 16 21 N -0.72 -34.39 5.24 -316.37 -1.66 -36.05 16 22 C -0.25 -13.36 9.96 84.03 0.84 -12.52 16 23 H 0.07 3.84 7.83 -2.91 -0.02 3.82 16 24 C -0.07 -3.74 5.50 84.86 0.47 -3.28 16 25 N -0.96 -57.41 13.06 21.65 0.28 -57.12 16 26 Si 0.97 46.08 29.55 68.60 2.03 48.11 16 27 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 28 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 29 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 30 H 0.06 1.19 8.06 -2.39 -0.02 1.17 16 31 H 0.09 1.17 8.14 -2.39 -0.02 1.16 16 32 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.11 1.45 6.74 -2.39 -0.02 1.44 16 34 H 0.11 1.47 6.36 -2.38 -0.02 1.46 16 35 H 0.19 1.70 2.75 -7.95 -0.02 1.68 16 36 H 0.20 -0.84 8.06 -2.91 -0.02 -0.86 16 37 H 0.20 -1.03 7.93 -2.91 -0.02 -1.05 16 38 H 0.19 0.33 7.87 -2.39 -0.02 0.31 16 39 H 0.04 1.86 7.99 -2.39 -0.02 1.84 16 40 H 0.05 2.13 8.14 -2.38 -0.02 2.11 16 41 H 0.38 19.24 7.76 -92.71 -0.72 18.52 16 42 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 Total: -1.00 -86.77 358.79 5.04 -81.72 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: 0.35 Total: 13.18 kcal Atomic # 6 Polarization: 7.29 SS G_CDS: 4.65 Total: 11.94 kcal Atomic # 7 Polarization: -110.72 SS G_CDS: -4.13 Total: -114.85 kcal Atomic # 8 Polarization: -27.41 SS G_CDS: -0.06 Total: -27.47 kcal Atomic # 9 Polarization: -14.83 SS G_CDS: 2.20 Total: -12.63 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.11 kcal Total: -86.77 5.04 -81.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054668756.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.002 kcal (2) G-P(sol) polarization free energy of solvation -86.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 13.14 seconds