Wall clock time and date at job start Wed Apr 1 2020 02:11:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.70774 * 2 1 4 4 C 1.53196 * 109.58624 * 239.63848 * 2 1 3 5 5 C 1.53041 * 109.31308 * 185.57948 * 4 2 1 6 6 C 1.53039 * 109.53623 * 61.36593 * 5 4 2 7 7 H 1.09005 * 109.49595 * 178.68315 * 6 5 4 8 8 N 1.46495 * 109.52297 * 58.60739 * 6 5 4 9 9 C 1.34775 * 120.00324 * 155.14164 * 8 6 5 10 10 O 1.21590 * 119.99952 * 0.02562 * 9 8 6 11 11 C 1.47573 * 119.99977 * 179.97438 * 9 8 6 12 12 C 1.39746 * 120.13471 * 359.72751 * 11 9 8 13 13 C 1.37920 * 119.88032 * 179.76956 * 12 11 9 14 14 F 1.35099 * 119.93295 * 180.22808 * 13 12 11 15 15 C 1.38956 * 120.14215 * 0.50351 * 13 12 11 16 16 F 1.35101 * 119.86551 * 179.76672 * 15 13 12 17 17 C 1.38449 * 120.26607 * 359.74987 * 15 13 12 18 18 C 1.38215 * 120.11827 * 359.97438 * 17 15 13 19 19 F 1.35104 * 120.06715 * 180.02562 * 18 17 15 20 20 C 1.53184 * 109.31637 * 298.63594 * 6 5 4 21 21 N 1.46928 * 108.77752 * 54.63557 * 20 6 5 22 22 C 1.36930 * 120.63025 * 126.11424 * 21 20 6 23 23 H 1.08006 * 120.00027 * 209.12934 * 22 21 20 24 24 C 1.38816 * 120.00243 * 29.14141 * 22 21 20 25 25 N 1.31612 * 119.99748 * 15.07593 * 24 22 21 26 26 Si 1.86796 * 120.00120 * 195.08009 * 24 22 21 27 27 H 1.48500 * 109.47032 * 89.99376 * 26 24 22 28 28 H 1.48494 * 109.47144 * 209.99508 * 26 24 22 29 29 H 1.48500 * 109.46905 * 329.99873 * 26 24 22 30 30 H 1.08999 * 109.46642 * 299.65027 * 1 2 3 31 31 H 1.08998 * 109.46990 * 59.64663 * 1 2 3 32 32 H 1.08996 * 109.47351 * 179.64507 * 1 2 3 33 33 H 1.09005 * 109.49282 * 65.63188 * 4 2 1 34 34 H 1.08994 * 109.52635 * 305.54815 * 4 2 1 35 35 H 1.09001 * 109.45763 * 301.35066 * 5 4 2 36 36 H 1.09004 * 109.45050 * 181.38483 * 5 4 2 37 37 H 0.97010 * 120.00189 * 335.14004 * 8 6 5 38 38 H 1.07998 * 120.06429 * 0.02562 * 12 11 9 39 39 H 1.07998 * 119.94042 * 180.02562 * 17 15 13 40 40 H 1.08999 * 109.58564 * 294.84902 * 20 6 5 41 41 H 1.09003 * 109.70697 * 174.49375 * 20 6 5 42 42 H 0.97000 * 120.00162 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8976 1.0261 0.0000 4 6 2.0436 -0.7295 -1.2454 5 6 3.5675 -0.8482 -1.1701 6 6 3.9568 -1.6658 0.0636 7 1 5.0412 -1.7697 0.1038 8 7 3.3411 -2.9928 -0.0143 9 6 3.8964 -4.0328 0.6388 10 8 4.9082 -3.8696 1.2930 11 6 3.2758 -5.3694 0.5608 12 6 2.1091 -5.5587 -0.1848 13 6 1.5361 -6.8111 -0.2580 14 9 0.4107 -6.9963 -0.9822 15 6 2.1106 -7.8818 0.4162 16 9 1.5419 -9.1052 0.3445 17 6 3.2635 -7.6999 1.1609 18 6 3.8500 -6.4507 1.2371 19 9 4.9753 -6.2744 1.9637 20 6 3.4650 -0.9470 1.3238 21 7 2.0225 -0.6996 1.1945 22 6 1.1531 -1.1180 2.1661 23 1 0.1361 -1.3735 1.9072 24 6 1.5786 -1.2138 3.4840 25 7 2.6995 -0.6337 3.8573 26 14 0.5605 -2.1658 4.7275 27 1 0.9987 -3.5846 4.7435 28 1 0.7475 -1.5747 6.0768 29 1 -0.8741 -2.0951 4.3505 30 1 -0.3632 0.5084 0.8931 31 1 -0.3633 0.5193 -0.8868 32 1 -0.3634 -1.0276 -0.0064 33 1 1.7661 -0.1669 -2.1368 34 1 1.6030 -1.7254 -1.2918 35 1 4.0061 0.1472 -1.0992 36 1 3.9376 -1.3451 -2.0669 37 1 2.5336 -3.1230 -0.5359 38 1 1.6591 -4.7267 -0.7061 39 1 3.7057 -8.5358 1.6825 40 1 3.9903 0.0019 1.4317 41 1 3.6520 -1.5697 2.1987 42 1 2.9972 -0.7009 4.7780 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071771862.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:11:18 Heat of formation + Delta-G solvation = -117.171428 kcal Electronic energy + Delta-G solvation = -31196.726244 eV Core-core repulsion = 26535.157563 eV Total energy + Delta-G solvation = -4661.568681 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.130 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -49.79844 -49.01542 -48.85293 -40.02895 -38.50631 -37.37384 -34.26397 -32.83026 -31.96593 -30.50975 -30.13832 -29.82239 -26.31123 -25.09700 -24.43601 -23.34061 -22.22245 -21.16385 -20.46350 -18.90821 -18.72840 -18.15058 -17.83286 -16.80451 -16.74209 -16.34692 -15.64572 -15.60193 -15.43802 -15.25876 -14.92687 -14.74886 -14.70943 -14.33848 -14.08415 -13.94147 -13.74301 -13.37742 -13.10113 -12.89632 -12.59958 -12.46714 -12.04396 -12.01758 -11.78466 -11.28313 -11.20697 -10.99711 -10.93154 -10.74786 -10.42200 -10.36972 -9.99702 -9.71493 -9.54559 -9.51480 -9.48834 -8.89249 -8.48498 -8.47353 -6.64150 -5.77524 -3.21978 0.18054 0.51995 2.51057 3.23141 3.36322 3.37093 3.42783 3.45201 3.60377 3.68481 4.06604 4.08225 4.44408 4.47662 4.77164 5.14378 5.21956 5.26831 5.31005 5.32941 5.37783 5.45163 5.54221 5.55177 5.64385 5.94795 6.04810 6.09938 6.27324 6.29434 6.30616 6.38910 6.45305 6.54185 6.60699 6.80451 7.00301 7.06369 7.31397 7.65219 7.80544 7.89938 8.46052 8.55469 9.20729 9.85064 10.40693 11.30357 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.010108 B = 0.004568 C = 0.004271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2769.471747 B = 6128.007390 C = 6553.598354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.165 3.835 3 H 0.026 0.974 4 C -0.131 4.131 5 C -0.119 4.119 6 C 0.118 3.882 7 H 0.079 0.921 8 N -0.689 5.689 9 C 0.556 3.444 10 O -0.522 6.522 11 C -0.140 4.140 12 C -0.062 4.062 13 C 0.052 3.948 14 F -0.121 7.121 15 C 0.117 3.883 16 F -0.118 7.118 17 C -0.176 4.176 18 C 0.181 3.819 19 F -0.099 7.099 20 C 0.160 3.840 21 N -0.583 5.583 22 C -0.252 4.252 23 H 0.069 0.931 24 C 0.007 3.993 25 N -0.898 5.898 26 Si 0.894 3.106 27 H -0.288 1.288 28 H -0.291 1.291 29 H -0.279 1.279 30 H 0.061 0.939 31 H 0.037 0.963 32 H 0.051 0.949 33 H 0.054 0.946 34 H 0.052 0.948 35 H 0.073 0.927 36 H 0.052 0.948 37 H 0.394 0.606 38 H 0.160 0.840 39 H 0.165 0.835 40 H 0.027 0.973 41 H 0.099 0.901 42 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.117 -10.135 -11.696 15.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.058 3.942 3 H 0.043 0.957 4 C -0.170 4.170 5 C -0.157 4.157 6 C 0.013 3.987 7 H 0.097 0.903 8 N -0.340 5.340 9 C 0.341 3.659 10 O -0.399 6.399 11 C -0.144 4.144 12 C -0.082 4.082 13 C 0.032 3.968 14 F -0.100 7.100 15 C 0.097 3.903 16 F -0.096 7.096 17 C -0.195 4.195 18 C 0.160 3.840 19 F -0.076 7.076 20 C 0.033 3.967 21 N -0.306 5.306 22 C -0.382 4.382 23 H 0.086 0.914 24 C -0.192 4.192 25 N -0.542 5.542 26 Si 0.724 3.276 27 H -0.215 1.215 28 H -0.217 1.217 29 H -0.205 1.205 30 H 0.080 0.920 31 H 0.056 0.944 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.091 0.909 36 H 0.071 0.929 37 H 0.230 0.770 38 H 0.178 0.822 39 H 0.182 0.818 40 H 0.045 0.955 41 H 0.117 0.883 42 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 0.652 -9.989 -11.046 14.907 hybrid contribution -1.106 -0.817 0.557 1.484 sum -0.454 -10.806 -10.489 15.066 Atomic orbital electron populations 1.21796 0.96078 1.01191 1.00269 1.20470 0.92905 0.93706 0.87113 0.95652 1.22080 0.95122 1.00573 0.99269 1.21702 0.97038 1.00280 0.96682 1.21871 0.97107 0.81187 0.98562 0.90285 1.45749 1.29215 1.08648 1.50391 1.17548 0.84523 0.83258 0.80594 1.90854 1.24529 1.84417 1.40097 1.20197 0.97354 0.95350 1.01520 1.21119 0.93802 0.95878 0.97389 1.17375 0.87346 0.93497 0.98617 1.91567 1.47692 1.95743 1.74991 1.17381 0.93572 0.80211 0.99177 1.91572 1.83700 1.39773 1.94564 1.20905 0.96652 0.98283 1.03694 1.17240 0.84001 0.91845 0.90912 1.91663 1.46731 1.95703 1.73540 1.21217 0.83794 0.97221 0.94445 1.44050 1.02651 1.64685 1.19219 1.19083 0.94715 1.38139 0.86235 0.91376 1.25048 0.97669 0.99534 0.96951 1.69967 1.23276 1.44031 1.16882 0.86423 0.79825 0.80057 0.81286 1.21532 1.21720 1.20466 0.91999 0.94405 0.92993 0.92714 0.92886 0.90871 0.92911 0.77016 0.82244 0.81771 0.95485 0.88289 0.93600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 7.94 37.16 0.30 -2.04 16 2 C 0.16 3.07 3.50 -67.59 -0.24 2.83 16 3 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 4 C -0.13 -1.92 5.21 -26.61 -0.14 -2.06 16 5 C -0.12 -1.73 5.59 -26.69 -0.15 -1.88 16 6 C 0.12 2.11 2.81 -67.82 -0.19 1.92 16 7 H 0.08 1.45 7.58 -51.93 -0.39 1.06 16 8 N -0.69 -11.46 4.87 -54.72 -0.27 -11.72 16 9 C 0.56 10.05 7.73 -12.45 -0.10 9.96 16 10 O -0.52 -11.38 15.00 5.29 0.08 -11.30 16 11 C -0.14 -2.06 5.88 -104.92 -0.62 -2.68 16 12 C -0.06 -0.75 9.51 -39.13 -0.37 -1.13 16 13 C 0.05 0.61 7.29 -39.43 -0.29 0.33 16 14 F -0.12 -1.47 17.17 2.25 0.04 -1.43 16 15 C 0.12 1.34 7.31 -39.24 -0.29 1.05 16 16 F -0.12 -1.34 17.17 2.25 0.04 -1.30 16 17 C -0.18 -1.94 9.99 -39.51 -0.39 -2.34 16 18 C 0.18 2.55 7.28 -38.98 -0.28 2.27 16 19 F -0.10 -1.61 15.54 2.25 0.04 -1.57 16 20 C 0.16 3.65 4.90 -3.71 -0.02 3.63 16 21 N -0.58 -13.22 2.91 -164.77 -0.48 -13.70 16 22 C -0.25 -6.42 8.60 -15.06 -0.13 -6.55 16 23 H 0.07 1.70 6.20 -52.48 -0.33 1.37 16 24 C 0.01 0.20 4.96 -17.43 -0.09 0.11 16 25 N -0.90 -25.88 11.14 55.49 0.62 -25.26 16 26 Si 0.89 21.70 29.58 -169.99 -5.03 16.67 16 27 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 28 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 29 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 30 H 0.06 1.19 7.63 -51.93 -0.40 0.79 16 31 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.05 0.89 7.43 -51.93 -0.39 0.51 16 33 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.05 0.75 6.41 -51.93 -0.33 0.41 16 35 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 36 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.39 5.63 4.80 -40.82 -0.20 5.43 16 38 H 0.16 1.63 6.40 -52.49 -0.34 1.29 16 39 H 0.16 1.38 8.06 -52.49 -0.42 0.95 16 40 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.10 2.70 6.05 -51.93 -0.31 2.38 16 42 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 350.91 15.07 5.29 5.29 Total: -1.00 -30.48 350.91 -7.44 -37.92 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -4.77 Total: 2.99 kcal Atomic # 6 Polarization: 6.41 SS G_CDS: -2.99 Total: 3.41 kcal Atomic # 7 Polarization: -50.55 SS G_CDS: -0.13 Total: -50.68 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: 0.08 Total: -11.30 kcal Atomic # 9 Polarization: -4.42 SS G_CDS: 0.11 Total: -4.31 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.03 Total: 16.67 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.48 -7.44 -37.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071771862.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.250 kcal (2) G-P(sol) polarization free energy of solvation -30.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds