Wall clock time and date at job start Wed Apr 1 2020 02:11:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.70774 * 2 1 4 4 C 1.53196 * 109.58624 * 239.63848 * 2 1 3 5 5 C 1.53041 * 109.31308 * 185.57948 * 4 2 1 6 6 C 1.53039 * 109.53623 * 61.36593 * 5 4 2 7 7 H 1.09005 * 109.49595 * 178.68315 * 6 5 4 8 8 N 1.46495 * 109.52297 * 58.60739 * 6 5 4 9 9 C 1.34775 * 120.00324 * 155.14164 * 8 6 5 10 10 O 1.21590 * 119.99952 * 0.02562 * 9 8 6 11 11 C 1.47573 * 119.99977 * 179.97438 * 9 8 6 12 12 C 1.39746 * 120.13471 * 359.72751 * 11 9 8 13 13 C 1.37920 * 119.88032 * 179.76956 * 12 11 9 14 14 F 1.35099 * 119.93295 * 180.22808 * 13 12 11 15 15 C 1.38956 * 120.14215 * 0.50351 * 13 12 11 16 16 F 1.35101 * 119.86551 * 179.76672 * 15 13 12 17 17 C 1.38449 * 120.26607 * 359.74987 * 15 13 12 18 18 C 1.38215 * 120.11827 * 359.97438 * 17 15 13 19 19 F 1.35104 * 120.06715 * 180.02562 * 18 17 15 20 20 C 1.53184 * 109.31637 * 298.63594 * 6 5 4 21 21 N 1.46928 * 108.77752 * 54.63557 * 20 6 5 22 22 C 1.36930 * 120.63025 * 126.11424 * 21 20 6 23 23 H 1.08006 * 120.00027 * 209.12934 * 22 21 20 24 24 C 1.38816 * 120.00243 * 29.14141 * 22 21 20 25 25 N 1.31612 * 119.99748 * 15.07593 * 24 22 21 26 26 Si 1.86796 * 120.00120 * 195.08009 * 24 22 21 27 27 H 1.48500 * 109.47032 * 89.99376 * 26 24 22 28 28 H 1.48494 * 109.47144 * 209.99508 * 26 24 22 29 29 H 1.48500 * 109.46905 * 329.99873 * 26 24 22 30 30 H 1.08999 * 109.46642 * 299.65027 * 1 2 3 31 31 H 1.08998 * 109.46990 * 59.64663 * 1 2 3 32 32 H 1.08996 * 109.47351 * 179.64507 * 1 2 3 33 33 H 1.09005 * 109.49282 * 65.63188 * 4 2 1 34 34 H 1.08994 * 109.52635 * 305.54815 * 4 2 1 35 35 H 1.09001 * 109.45763 * 301.35066 * 5 4 2 36 36 H 1.09004 * 109.45050 * 181.38483 * 5 4 2 37 37 H 0.97010 * 120.00189 * 335.14004 * 8 6 5 38 38 H 1.07998 * 120.06429 * 0.02562 * 12 11 9 39 39 H 1.07998 * 119.94042 * 180.02562 * 17 15 13 40 40 H 1.08999 * 109.58564 * 294.84902 * 20 6 5 41 41 H 1.09003 * 109.70697 * 174.49375 * 20 6 5 42 42 H 0.97000 * 120.00162 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8976 1.0261 0.0000 4 6 2.0436 -0.7295 -1.2454 5 6 3.5675 -0.8482 -1.1701 6 6 3.9568 -1.6658 0.0636 7 1 5.0412 -1.7697 0.1038 8 7 3.3411 -2.9928 -0.0143 9 6 3.8964 -4.0328 0.6388 10 8 4.9082 -3.8696 1.2930 11 6 3.2758 -5.3694 0.5608 12 6 2.1091 -5.5587 -0.1848 13 6 1.5361 -6.8111 -0.2580 14 9 0.4107 -6.9963 -0.9822 15 6 2.1106 -7.8818 0.4162 16 9 1.5419 -9.1052 0.3445 17 6 3.2635 -7.6999 1.1609 18 6 3.8500 -6.4507 1.2371 19 9 4.9753 -6.2744 1.9637 20 6 3.4650 -0.9470 1.3238 21 7 2.0225 -0.6996 1.1945 22 6 1.1531 -1.1180 2.1661 23 1 0.1361 -1.3735 1.9072 24 6 1.5786 -1.2138 3.4840 25 7 2.6995 -0.6337 3.8573 26 14 0.5605 -2.1658 4.7275 27 1 0.9987 -3.5846 4.7435 28 1 0.7475 -1.5747 6.0768 29 1 -0.8741 -2.0951 4.3505 30 1 -0.3632 0.5084 0.8931 31 1 -0.3633 0.5193 -0.8868 32 1 -0.3634 -1.0276 -0.0064 33 1 1.7661 -0.1669 -2.1368 34 1 1.6030 -1.7254 -1.2918 35 1 4.0061 0.1472 -1.0992 36 1 3.9376 -1.3451 -2.0669 37 1 2.5336 -3.1230 -0.5359 38 1 1.6591 -4.7267 -0.7061 39 1 3.7057 -8.5358 1.6825 40 1 3.9903 0.0019 1.4317 41 1 3.6520 -1.5697 2.1987 42 1 2.9972 -0.7009 4.7780 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071771862.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:11:16 Heat of formation + Delta-G solvation = -135.160907 kcal Electronic energy + Delta-G solvation = -31197.506327 eV Core-core repulsion = 26535.157563 eV Total energy + Delta-G solvation = -4662.348764 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.130 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -50.73515 -50.17350 -49.79180 -41.36530 -39.75249 -38.78920 -35.85375 -34.53689 -33.18199 -31.78929 -31.59143 -31.16321 -27.86640 -26.81055 -25.54941 -24.40485 -23.84567 -22.43445 -21.95730 -20.43231 -19.81703 -19.24728 -18.91101 -18.16274 -17.89057 -17.71240 -17.11059 -16.85224 -16.74794 -16.33157 -16.18485 -15.92770 -15.80216 -15.72757 -15.59457 -15.39975 -15.04419 -14.76977 -14.48320 -14.37991 -14.02361 -13.67121 -13.54353 -13.05046 -12.95593 -12.89789 -12.82307 -12.61050 -12.54479 -12.38942 -12.09458 -12.05077 -11.55821 -11.23886 -11.07984 -11.02010 -10.52239 -10.50371 -10.07085 -9.84301 -8.55964 -7.80592 -5.25366 -0.86559 -0.43967 1.39786 1.41255 1.43127 1.50011 2.02251 2.32074 2.33327 2.50940 2.68671 3.06935 3.12866 3.35372 3.38450 3.65439 3.76119 4.02574 4.11518 4.17932 4.20982 4.25635 4.35933 4.51178 4.58108 4.61935 4.68167 4.76731 4.84395 4.98957 5.06499 5.09516 5.15395 5.29431 5.32291 5.35013 5.59551 5.62149 5.67359 5.75340 5.78092 6.46063 6.53485 7.20550 7.20727 7.95306 8.45423 9.24508 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.010108 B = 0.004568 C = 0.004271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2769.471747 B = 6128.007390 C = 6553.598354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.153 3.847 3 H 0.013 0.987 4 C -0.120 4.120 5 C -0.111 4.111 6 C 0.128 3.872 7 H 0.069 0.931 8 N -0.679 5.679 9 C 0.550 3.450 10 O -0.571 6.571 11 C -0.159 4.159 12 C -0.049 4.049 13 C 0.057 3.943 14 F -0.119 7.119 15 C 0.128 3.872 16 F -0.113 7.113 17 C -0.156 4.156 18 C 0.162 3.838 19 F -0.119 7.119 20 C 0.169 3.831 21 N -0.594 5.594 22 C -0.232 4.232 23 H 0.079 0.921 24 C -0.055 4.055 25 N -0.937 5.937 26 Si 0.944 3.056 27 H -0.296 1.296 28 H -0.303 1.303 29 H -0.260 1.260 30 H 0.033 0.967 31 H 0.075 0.925 32 H 0.054 0.946 33 H 0.091 0.909 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.089 0.911 37 H 0.408 0.592 38 H 0.181 0.819 39 H 0.193 0.807 40 H -0.003 1.003 41 H 0.049 0.951 42 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.271 -11.595 -14.831 18.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.048 3.952 3 H 0.031 0.969 4 C -0.159 4.159 5 C -0.148 4.148 6 C 0.022 3.978 7 H 0.087 0.913 8 N -0.330 5.330 9 C 0.337 3.663 10 O -0.451 6.451 11 C -0.163 4.163 12 C -0.069 4.069 13 C 0.037 3.963 14 F -0.098 7.098 15 C 0.107 3.893 16 F -0.091 7.091 17 C -0.176 4.176 18 C 0.141 3.859 19 F -0.097 7.097 20 C 0.042 3.958 21 N -0.318 5.318 22 C -0.363 4.363 23 H 0.097 0.903 24 C -0.249 4.249 25 N -0.584 5.584 26 Si 0.774 3.226 27 H -0.224 1.224 28 H -0.231 1.231 29 H -0.184 1.184 30 H 0.052 0.948 31 H 0.093 0.907 32 H 0.073 0.927 33 H 0.110 0.890 34 H 0.084 0.916 35 H 0.092 0.908 36 H 0.107 0.893 37 H 0.246 0.754 38 H 0.198 0.802 39 H 0.210 0.790 40 H 0.015 0.985 41 H 0.068 0.932 42 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -1.565 -11.455 -14.249 18.349 hybrid contribution -0.486 -0.364 1.463 1.584 sum -2.051 -11.819 -12.786 17.532 Atomic orbital electron populations 1.21732 0.94693 1.01495 1.00747 1.20786 0.94145 0.93246 0.87030 0.96909 1.21979 0.94645 1.01202 0.98096 1.21680 0.97365 0.99937 0.95858 1.21566 0.96529 0.81862 0.97881 0.91314 1.45623 1.29529 1.07805 1.50069 1.18087 0.83997 0.84659 0.79571 1.90827 1.26784 1.85394 1.42119 1.19975 0.98816 0.93783 1.03739 1.21169 0.92505 0.96747 0.96445 1.17342 0.87219 0.93381 0.98374 1.91581 1.47559 1.95700 1.74920 1.17390 0.93247 0.80207 0.98486 1.91594 1.83563 1.39539 1.94435 1.21038 0.95953 0.97755 1.02807 1.17533 0.83956 0.92965 0.91397 1.91613 1.47927 1.95918 1.74203 1.20882 0.84227 0.95428 0.95268 1.44266 1.02138 1.65355 1.20043 1.19431 0.95132 1.35309 0.86424 0.90334 1.25702 0.98840 1.01470 0.98927 1.70146 1.25327 1.46698 1.16218 0.85592 0.79651 0.78270 0.79067 1.22362 1.23051 1.18442 0.94819 0.90663 0.92710 0.89044 0.91567 0.90792 0.89298 0.75364 0.80200 0.78951 0.98486 0.93212 0.94947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.07 7.94 71.98 0.57 -3.50 16 2 C 0.15 5.39 3.50 44.98 0.16 5.55 16 3 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 4 C -0.12 -3.02 5.21 30.67 0.16 -2.86 16 5 C -0.11 -2.89 5.59 30.62 0.17 -2.72 16 6 C 0.13 4.55 2.81 45.07 0.13 4.67 16 7 H 0.07 2.60 7.58 -2.38 -0.02 2.58 16 8 N -0.68 -21.93 4.87 -445.31 -2.17 -24.09 16 9 C 0.55 20.12 7.73 86.71 0.67 20.79 16 10 O -0.57 -26.17 15.00 -4.00 -0.06 -26.23 16 11 C -0.16 -4.56 5.88 -20.05 -0.12 -4.68 16 12 C -0.05 -1.07 9.51 22.56 0.21 -0.85 16 13 C 0.06 1.18 7.29 22.37 0.16 1.34 16 14 F -0.12 -2.47 17.17 44.97 0.77 -1.70 16 15 C 0.13 2.52 7.31 22.49 0.16 2.69 16 16 F -0.11 -2.20 17.17 44.97 0.77 -1.43 16 17 C -0.16 -3.11 9.99 22.31 0.22 -2.89 16 18 C 0.16 4.49 7.28 22.66 0.16 4.65 16 19 F -0.12 -3.98 15.54 44.97 0.70 -3.28 16 20 C 0.17 8.03 4.90 86.36 0.42 8.45 16 21 N -0.59 -27.01 2.91 -675.21 -1.96 -28.98 16 22 C -0.23 -11.86 8.60 84.04 0.72 -11.14 16 23 H 0.08 3.81 6.20 -2.91 -0.02 3.79 16 24 C -0.05 -3.05 4.96 84.86 0.42 -2.63 16 25 N -0.94 -57.04 11.14 21.65 0.24 -56.80 16 26 Si 0.94 45.64 29.58 68.60 2.03 47.66 16 27 H -0.30 -14.49 7.11 99.48 0.71 -13.79 16 28 H -0.30 -15.13 7.11 99.48 0.71 -14.43 16 29 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 30 H 0.03 1.23 7.63 -2.39 -0.02 1.21 16 31 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.05 1.68 7.43 -2.39 -0.02 1.67 16 33 H 0.09 1.75 8.14 -2.38 -0.02 1.73 16 34 H 0.07 1.52 6.41 -2.39 -0.02 1.51 16 35 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.09 1.79 8.14 -2.38 -0.02 1.77 16 37 H 0.41 10.53 4.80 -92.70 -0.45 10.09 16 38 H 0.18 3.02 6.40 -2.91 -0.02 3.01 16 39 H 0.19 2.66 8.06 -2.91 -0.02 2.64 16 40 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 41 H 0.05 2.88 6.05 -2.39 -0.01 2.86 16 42 H 0.24 14.67 8.31 -92.71 -0.77 13.90 16 Total: -1.00 -71.46 350.91 5.20 -66.26 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: 0.64 Total: 11.71 kcal Atomic # 6 Polarization: 12.64 SS G_CDS: 4.24 Total: 16.87 kcal Atomic # 7 Polarization: -105.98 SS G_CDS: -3.89 Total: -109.87 kcal Atomic # 8 Polarization: -26.17 SS G_CDS: -0.06 Total: -26.23 kcal Atomic # 9 Polarization: -8.65 SS G_CDS: 2.24 Total: -6.41 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.66 kcal Total: -71.46 5.20 -66.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071771862.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.901 kcal (2) G-P(sol) polarization free energy of solvation -71.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds