Wall clock time and date at job start Wed Apr 1 2020 02:11:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.58615 * 2 1 4 4 C 1.53193 * 109.58350 * 120.43107 * 2 1 3 5 5 C 1.53046 * 109.31172 * 174.42275 * 4 2 1 6 6 C 1.53045 * 109.53278 * 298.62992 * 5 4 2 7 7 H 1.09006 * 109.49638 * 181.31448 * 6 5 4 8 8 N 1.46493 * 109.49966 * 301.38026 * 6 5 4 9 9 C 1.34779 * 120.00154 * 205.00043 * 8 6 5 10 10 O 1.21581 * 119.99860 * 0.02562 * 9 8 6 11 11 C 1.47580 * 120.00069 * 180.02562 * 9 8 6 12 12 C 1.39742 * 120.13092 * 359.97438 * 11 9 8 13 13 C 1.37752 * 119.94052 * 179.97438 * 12 11 9 14 14 C 1.38709 * 120.21599 * 0.02562 * 13 12 11 15 15 F 1.35105 * 119.86683 * 179.97438 * 14 13 12 16 16 C 1.38663 * 120.26842 * 359.97438 * 14 13 12 17 17 F 1.35097 * 119.97141 * 180.02562 * 16 14 13 18 18 C 1.38384 * 120.04772 * 359.78438 * 16 14 13 19 19 F 1.35102 * 120.10213 * 180.23255 * 18 16 14 20 20 C 1.52760 * 109.38321 * 61.24099 * 6 5 4 21 21 N 1.46923 * 109.00972 * 305.58613 * 20 6 5 22 22 C 1.36935 * 120.63227 * 233.58663 * 21 20 6 23 23 H 1.07997 * 120.00569 * 150.45253 * 22 21 20 24 24 C 1.38817 * 119.99629 * 330.45237 * 22 21 20 25 25 N 1.31619 * 120.00210 * 336.14094 * 24 22 21 26 26 Si 1.86806 * 119.99761 * 156.14606 * 24 22 21 27 27 H 1.48499 * 109.47090 * 60.00122 * 26 24 22 28 28 H 1.48493 * 109.47023 * 299.99778 * 26 24 22 29 29 H 1.48503 * 109.46685 * 179.97438 * 26 24 22 30 30 H 1.08998 * 109.46976 * 180.28350 * 1 2 3 31 31 H 1.09003 * 109.46853 * 300.28577 * 1 2 3 32 32 H 1.08994 * 109.46867 * 60.28276 * 1 2 3 33 33 H 1.08998 * 109.49431 * 294.36662 * 4 2 1 34 34 H 1.08996 * 109.50318 * 54.43257 * 4 2 1 35 35 H 1.08998 * 109.46262 * 58.64907 * 5 4 2 36 36 H 1.08998 * 109.46324 * 178.61396 * 5 4 2 37 37 H 0.97003 * 120.00318 * 25.00298 * 8 6 5 38 38 H 1.08001 * 120.03053 * 0.02562 * 12 11 9 39 39 H 1.08001 * 119.88989 * 180.02562 * 13 12 11 40 40 H 1.09002 * 109.50885 * 185.70100 * 20 6 5 41 41 H 1.09001 * 109.43410 * 65.42323 * 20 6 5 42 42 H 0.96996 * 120.00106 * 354.26881 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7310 1.2445 5 6 3.5675 -0.8496 1.1691 6 6 3.9569 -1.6658 -0.0656 7 1 5.0412 -1.7697 -0.1060 8 7 3.3411 -2.9928 0.0114 9 6 3.8978 -4.0329 -0.6403 10 8 4.9114 -3.8699 -1.2917 11 6 3.2772 -5.3697 -0.5632 12 6 2.1125 -5.5602 0.1852 13 6 1.5362 -6.8094 0.2540 14 6 2.1085 -7.8801 -0.4169 15 9 1.5376 -9.1025 -0.3441 16 6 3.2641 -7.7010 -1.1621 17 9 3.8160 -8.7479 -1.8136 18 6 3.8495 -6.4497 -1.2429 19 9 4.9728 -6.2730 -1.9724 20 6 3.4644 -0.9504 -1.3223 21 7 2.0225 -0.6981 -1.1954 22 6 1.1536 -1.1108 -2.1699 23 1 0.1371 -1.3698 -1.9128 24 6 1.5793 -1.1964 -3.4884 25 7 2.6004 -0.4742 -3.8985 26 14 0.7027 -2.3364 -4.6807 27 1 -0.7235 -1.9373 -4.7893 28 1 0.7895 -3.7332 -4.1844 29 1 1.3451 -2.2443 -6.0164 30 1 -0.3633 -1.0276 0.0051 31 1 -0.3633 0.5183 0.8874 32 1 -0.3633 0.5094 -0.8925 33 1 1.7661 -0.1696 2.1366 34 1 1.6025 -1.7267 1.2895 35 1 4.0062 0.1458 1.0995 36 1 3.9379 -1.3476 2.0652 37 1 2.5326 -3.1230 0.5314 38 1 1.6642 -4.7285 0.7084 39 1 0.6359 -6.9557 0.8323 40 1 3.6503 -1.5772 -2.1944 41 1 3.9928 -0.0033 -1.4311 42 1 3.0027 0.1783 -3.3042 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071780021.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:11:29 Heat of formation + Delta-G solvation = -118.363327 kcal Electronic energy + Delta-G solvation = -31214.133910 eV Core-core repulsion = 26552.513545 eV Total energy + Delta-G solvation = -4661.620366 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.130 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -49.91585 -49.28463 -48.53923 -40.14666 -38.65049 -37.50361 -34.41288 -33.05369 -31.75810 -30.86039 -30.15690 -29.72316 -26.37759 -25.04490 -24.31167 -23.41144 -22.16050 -21.34581 -20.62373 -18.98274 -18.74214 -18.16166 -17.93380 -16.94796 -16.93574 -16.67784 -15.98451 -15.62082 -15.43872 -15.13019 -14.98186 -14.75448 -14.60448 -14.41550 -14.19247 -13.93426 -13.54702 -13.45337 -13.38710 -13.20787 -12.63986 -12.31200 -12.12880 -12.07813 -11.84685 -11.45397 -11.33535 -11.28373 -10.89736 -10.69345 -10.44703 -10.09343 -10.02904 -9.83986 -9.68930 -9.26809 -9.20505 -9.16718 -8.62185 -8.36206 -6.86089 -6.03314 -3.24198 0.16005 0.49497 2.50078 2.99225 3.32002 3.46337 3.51383 3.54466 3.68805 3.90750 3.98542 4.15149 4.35636 4.53932 4.56704 5.08660 5.10836 5.19609 5.26033 5.30924 5.34957 5.46065 5.50478 5.52785 5.60069 5.80953 5.93031 5.98796 6.14208 6.20610 6.26311 6.28564 6.31656 6.42729 6.43820 6.59211 6.90577 6.95663 7.05093 7.18162 7.78598 8.01705 8.47436 8.57919 9.10828 9.84729 10.28968 11.23571 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.011134 B = 0.004415 C = 0.004010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2514.322898 B = 6339.784957 C = 6980.849395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.166 3.834 3 H 0.023 0.977 4 C -0.130 4.130 5 C -0.119 4.119 6 C 0.125 3.875 7 H 0.081 0.919 8 N -0.690 5.690 9 C 0.557 3.443 10 O -0.522 6.522 11 C -0.143 4.143 12 C -0.035 4.035 13 C -0.143 4.143 14 C 0.117 3.883 15 F -0.117 7.117 16 C 0.021 3.979 17 F -0.115 7.115 18 C 0.157 3.843 19 F -0.092 7.092 20 C 0.140 3.860 21 N -0.589 5.589 22 C -0.348 4.348 23 H 0.059 0.941 24 C -0.019 4.019 25 N -0.912 5.912 26 Si 1.055 2.945 27 H -0.293 1.293 28 H -0.295 1.295 29 H -0.285 1.285 30 H 0.052 0.948 31 H 0.036 0.964 32 H 0.061 0.939 33 H 0.055 0.945 34 H 0.054 0.946 35 H 0.072 0.928 36 H 0.055 0.945 37 H 0.395 0.605 38 H 0.155 0.845 39 H 0.160 0.840 40 H 0.088 0.912 41 H 0.025 0.975 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.149 -9.562 13.771 16.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.060 3.940 3 H 0.041 0.959 4 C -0.170 4.170 5 C -0.157 4.157 6 C 0.020 3.980 7 H 0.099 0.901 8 N -0.341 5.341 9 C 0.342 3.658 10 O -0.399 6.399 11 C -0.147 4.147 12 C -0.054 4.054 13 C -0.161 4.161 14 C 0.096 3.904 15 F -0.096 7.096 16 C -0.001 4.001 17 F -0.094 7.094 18 C 0.135 3.865 19 F -0.070 7.070 20 C 0.013 3.987 21 N -0.314 5.314 22 C -0.477 4.477 23 H 0.077 0.923 24 C -0.222 4.222 25 N -0.551 5.551 26 Si 0.886 3.114 27 H -0.220 1.220 28 H -0.222 1.222 29 H -0.211 1.211 30 H 0.071 0.929 31 H 0.055 0.945 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.091 0.909 36 H 0.074 0.926 37 H 0.232 0.768 38 H 0.172 0.828 39 H 0.177 0.823 40 H 0.106 0.894 41 H 0.043 0.957 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.364 -10.076 11.661 15.471 hybrid contribution -0.349 0.107 1.467 1.512 sum -1.713 -9.969 13.128 16.573 Atomic orbital electron populations 1.21766 0.95838 1.01253 1.00162 1.20457 0.93171 0.93402 0.86977 0.95914 1.22066 0.95003 1.00673 0.99233 1.21701 0.97119 1.00229 0.96663 1.21604 0.97193 0.81331 0.97906 0.90100 1.45693 1.29235 1.08407 1.50759 1.17577 0.84479 0.83350 0.80439 1.90858 1.24458 1.84518 1.40089 1.20219 0.98328 0.94430 1.01723 1.21165 0.92101 0.97219 0.94891 1.21049 1.02334 0.90907 1.01847 1.17533 0.91842 0.82008 0.99003 1.91573 1.83293 1.40188 1.94509 1.17410 0.96180 0.84604 1.01864 1.91568 1.84495 1.54379 1.78930 1.17325 0.85121 0.91048 0.92996 1.91672 1.46491 1.95499 1.73332 1.21277 0.84943 0.96841 0.95657 1.44115 1.02197 1.65190 1.19852 1.19827 0.95816 1.44023 0.88063 0.92291 1.25735 0.99973 1.00706 0.95790 1.70776 1.25493 1.20845 1.37982 0.83655 0.75023 0.76030 0.76721 1.22005 1.22198 1.21056 0.92925 0.94465 0.92038 0.92596 0.92726 0.90888 0.92594 0.76839 0.82797 0.82256 0.89383 0.95713 0.92001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.26 7.95 37.16 0.30 -1.97 16 2 C 0.17 3.03 3.50 -67.59 -0.24 2.80 16 3 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 4 C -0.13 -1.84 5.20 -26.61 -0.14 -1.98 16 5 C -0.12 -1.66 5.59 -26.68 -0.15 -1.81 16 6 C 0.13 2.18 2.81 -68.03 -0.19 1.99 16 7 H 0.08 1.45 7.58 -51.93 -0.39 1.06 16 8 N -0.69 -11.15 4.86 -54.93 -0.27 -11.42 16 9 C 0.56 10.03 7.73 -12.45 -0.10 9.94 16 10 O -0.52 -11.52 15.00 5.29 0.08 -11.44 16 11 C -0.14 -2.10 5.88 -104.92 -0.62 -2.72 16 12 C -0.03 -0.37 9.53 -39.20 -0.37 -0.74 16 13 C -0.14 -1.30 10.00 -39.59 -0.40 -1.69 16 14 C 0.12 1.32 7.31 -39.25 -0.29 1.04 16 15 F -0.12 -1.32 17.17 2.25 0.04 -1.29 16 16 C 0.02 0.28 7.30 -39.37 -0.29 -0.01 16 17 F -0.12 -1.66 17.09 2.25 0.04 -1.62 16 18 C 0.16 2.44 7.29 -38.92 -0.28 2.16 16 19 F -0.09 -1.68 15.46 2.25 0.03 -1.64 16 20 C 0.14 3.10 4.25 -3.93 -0.02 3.08 16 21 N -0.59 -13.12 2.76 -165.03 -0.45 -13.57 16 22 C -0.35 -8.86 8.49 -15.06 -0.13 -8.99 16 23 H 0.06 1.49 6.28 -52.49 -0.33 1.16 16 24 C -0.02 -0.52 4.70 -17.43 -0.08 -0.60 16 25 N -0.91 -27.04 12.46 55.49 0.69 -26.35 16 26 Si 1.06 25.28 29.98 -169.99 -5.10 20.19 16 27 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 28 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 29 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 30 H 0.05 0.89 7.44 -51.93 -0.39 0.51 16 31 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 1.19 7.62 -51.93 -0.40 0.79 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.05 0.73 6.41 -51.93 -0.33 0.40 16 35 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.40 5.35 4.80 -40.82 -0.20 5.15 16 38 H 0.15 1.25 6.40 -52.49 -0.34 0.91 16 39 H 0.16 0.92 8.06 -52.49 -0.42 0.50 16 40 H 0.09 2.36 6.40 -51.93 -0.33 2.03 16 41 H 0.03 0.57 7.85 -51.93 -0.41 0.16 16 42 H 0.27 8.00 6.69 -40.82 -0.27 7.72 16 LS Contribution 349.85 15.07 5.27 5.27 Total: -1.00 -31.82 349.85 -7.36 -39.18 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -4.71 Total: 2.19 kcal Atomic # 6 Polarization: 3.47 SS G_CDS: -2.99 Total: 0.48 kcal Atomic # 7 Polarization: -51.30 SS G_CDS: -0.03 Total: -51.33 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: 0.08 Total: -11.44 kcal Atomic # 9 Polarization: -4.66 SS G_CDS: 0.11 Total: -4.54 kcal Atomic # 14 Polarization: 25.28 SS G_CDS: -5.10 Total: 20.19 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.82 -7.36 -39.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071780021.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.182 kcal (2) G-P(sol) polarization free energy of solvation -31.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds