Wall clock time and date at job start Wed Apr 1 2020 02:12:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09008 * 109.58362 * 2 1 4 4 C 1.53190 * 109.58728 * 239.71766 * 2 1 3 5 5 C 1.53046 * 109.31100 * 185.57755 * 4 2 1 6 6 C 1.53041 * 109.53877 * 61.35784 * 5 4 2 7 7 H 1.09005 * 109.49625 * 178.64641 * 6 5 4 8 8 N 1.46500 * 109.49294 * 58.59034 * 6 5 4 9 9 C 1.34783 * 120.00083 * 154.99671 * 8 6 5 10 10 O 1.21605 * 119.99897 * 0.02562 * 9 8 6 11 11 C 1.47416 * 120.00287 * 179.97438 * 9 8 6 12 12 C 1.39976 * 120.16238 * 89.72699 * 11 9 8 13 13 F 1.35100 * 120.08640 * 359.97348 * 12 11 9 14 14 C 1.38102 * 119.83174 * 179.70049 * 12 11 9 15 15 C 1.38599 * 120.16363 * 0.59815 * 14 12 11 16 16 F 1.35102 * 119.83474 * 179.69961 * 15 14 12 17 17 C 1.38597 * 120.33221 * 359.67703 * 15 14 12 18 18 C 1.38101 * 120.16355 * 0.02562 * 17 15 14 19 19 F 1.35103 * 120.08485 * 180.02562 * 18 17 15 20 20 C 1.53182 * 109.31739 * 298.63674 * 6 5 4 21 21 N 1.46924 * 109.58754 * 120.41938 * 2 1 3 22 22 C 1.36933 * 120.62918 * 353.38467 * 21 2 1 23 23 H 1.07996 * 120.00672 * 29.50526 * 22 21 2 24 24 C 1.38821 * 119.99756 * 209.50665 * 22 21 2 25 25 N 1.31626 * 119.99857 * 14.30668 * 24 22 21 26 26 Si 1.86796 * 120.00063 * 194.31215 * 24 22 21 27 27 H 1.48497 * 109.47583 * 89.99689 * 26 24 22 28 28 H 1.48508 * 109.47067 * 209.99864 * 26 24 22 29 29 H 1.48505 * 109.47093 * 329.99609 * 26 24 22 30 30 H 1.08997 * 109.46751 * 180.28421 * 1 2 3 31 31 H 1.08995 * 109.47240 * 300.28492 * 1 2 3 32 32 H 1.08996 * 109.47009 * 60.28694 * 1 2 3 33 33 H 1.08993 * 109.50383 * 65.62324 * 4 2 1 34 34 H 1.08999 * 109.49675 * 305.52371 * 4 2 1 35 35 H 1.09005 * 109.45663 * 301.34371 * 5 4 2 36 36 H 1.09003 * 109.44817 * 181.37537 * 5 4 2 37 37 H 0.97002 * 120.00577 * 335.27396 * 8 6 5 38 38 H 1.08000 * 119.91636 * 180.32133 * 14 12 11 39 39 H 1.07995 * 119.92086 * 180.02562 * 17 15 14 40 40 H 1.09002 * 109.58903 * 174.42111 * 20 6 5 41 41 H 1.09000 * 109.59040 * 294.84696 * 20 6 5 42 42 H 0.96996 * 119.99583 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0436 -0.7278 -1.2463 5 6 3.5676 -0.8464 -1.1711 6 6 3.9570 -1.6656 0.0615 7 1 5.0413 -1.7700 0.1013 8 7 3.3407 -2.9922 -0.0184 9 6 3.8973 -4.0341 0.6307 10 8 4.9108 -3.8728 1.2831 11 6 3.2768 -5.3690 0.5507 12 6 3.6447 -6.2556 -0.4680 13 9 4.5698 -5.8905 -1.3823 14 6 3.0636 -7.5068 -0.5328 15 6 2.1094 -7.8806 0.4003 16 9 1.5408 -9.1040 0.3270 17 6 1.7359 -7.0060 1.4085 18 6 2.3127 -5.7538 1.4897 19 9 1.9478 -4.9027 2.4735 20 6 3.4652 -0.9484 1.3226 21 7 2.0226 -0.7009 1.1937 22 6 1.1538 -1.1153 2.1676 23 1 0.1382 -1.3769 1.9096 24 6 1.5784 -1.1991 3.4866 25 7 2.7044 -0.6245 3.8532 26 14 0.5519 -2.1274 4.7410 27 1 0.9776 -3.5497 4.7741 28 1 0.7439 -1.5219 6.0834 29 1 -0.8821 -2.0486 4.3631 30 1 -0.3633 -1.0276 0.0051 31 1 -0.3633 0.5182 0.8874 32 1 -0.3633 0.5094 -0.8925 33 1 1.7661 -0.1642 -2.1370 34 1 1.6031 -1.7237 -1.2934 35 1 4.0062 0.1489 -1.0991 36 1 3.9377 -1.3423 -2.0685 37 1 2.5343 -3.1217 -0.5417 38 1 3.3502 -8.1939 -1.3152 39 1 0.9920 -7.3044 2.1323 40 1 3.6519 -1.5743 2.1953 41 1 3.9904 0.0004 1.4318 42 1 3.0013 -0.6833 4.7748 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071783144.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:12:47 Heat of formation + Delta-G solvation = -118.358196 kcal Electronic energy + Delta-G solvation = -31618.372643 eV Core-core repulsion = 26956.752500 eV Total energy + Delta-G solvation = -4661.620143 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.130 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -49.41769 -49.33451 -49.00123 -39.81495 -38.49169 -37.37978 -34.16446 -32.74607 -31.58407 -30.89455 -30.17861 -29.79912 -26.27057 -25.03756 -24.11517 -23.41423 -22.17641 -21.17647 -20.41171 -18.83115 -18.76863 -18.08671 -17.91370 -16.59309 -16.29895 -16.21710 -16.06387 -15.68903 -15.47599 -15.41585 -15.23865 -14.90047 -14.61449 -14.19082 -14.07832 -13.80431 -13.60323 -13.23065 -12.86521 -12.68550 -12.54329 -12.48634 -12.19850 -11.90023 -11.82874 -11.25585 -11.17183 -10.94970 -10.89441 -10.68235 -10.37800 -10.32527 -9.95329 -9.75930 -9.49573 -9.45856 -9.21586 -9.10241 -8.47112 -8.42052 -6.58647 -5.72187 -3.17281 0.36379 0.55401 2.77750 2.80998 3.20292 3.41593 3.46734 3.48620 3.50477 3.87422 3.95457 4.41431 4.50287 4.53177 4.72995 5.29242 5.31256 5.34084 5.38068 5.39445 5.44492 5.50176 5.52476 5.59825 5.61594 5.99234 6.09130 6.13244 6.31260 6.32592 6.34380 6.42493 6.49240 6.58771 6.64515 6.84193 7.03675 7.10313 7.35128 7.68818 7.85382 7.93313 8.51079 8.56217 9.25935 9.90229 10.45954 11.35821 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.010729 B = 0.005234 C = 0.004210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2609.133603 B = 5348.106746 C = 6649.554358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.165 3.835 3 H 0.025 0.975 4 C -0.131 4.131 5 C -0.118 4.118 6 C 0.116 3.884 7 H 0.078 0.922 8 N -0.683 5.683 9 C 0.565 3.435 10 O -0.523 6.523 11 C -0.203 4.203 12 C 0.191 3.809 13 F -0.114 7.114 14 C -0.209 4.209 15 C 0.173 3.827 16 F -0.121 7.121 17 C -0.207 4.207 18 C 0.204 3.796 19 F -0.092 7.092 20 C 0.162 3.838 21 N -0.582 5.582 22 C -0.249 4.249 23 H 0.067 0.933 24 C 0.010 3.990 25 N -0.900 5.900 26 Si 0.891 3.109 27 H -0.282 1.282 28 H -0.293 1.293 29 H -0.280 1.280 30 H 0.051 0.949 31 H 0.060 0.940 32 H 0.036 0.964 33 H 0.054 0.946 34 H 0.053 0.947 35 H 0.072 0.928 36 H 0.052 0.948 37 H 0.397 0.603 38 H 0.159 0.841 39 H 0.161 0.839 40 H 0.099 0.901 41 H 0.027 0.973 42 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.216 -11.148 -11.785 16.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.058 3.942 3 H 0.043 0.957 4 C -0.170 4.170 5 C -0.156 4.156 6 C 0.011 3.989 7 H 0.096 0.904 8 N -0.332 5.332 9 C 0.347 3.653 10 O -0.400 6.400 11 C -0.208 4.208 12 C 0.171 3.829 13 F -0.092 7.092 14 C -0.228 4.228 15 C 0.153 3.847 16 F -0.099 7.099 17 C -0.227 4.227 18 C 0.183 3.817 19 F -0.070 7.070 20 C 0.035 3.965 21 N -0.305 5.305 22 C -0.379 4.379 23 H 0.085 0.915 24 C -0.189 4.189 25 N -0.544 5.544 26 Si 0.721 3.279 27 H -0.209 1.209 28 H -0.219 1.219 29 H -0.206 1.206 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.055 0.945 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.091 0.909 36 H 0.071 0.929 37 H 0.232 0.768 38 H 0.177 0.823 39 H 0.179 0.821 40 H 0.117 0.883 41 H 0.045 0.955 42 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -0.426 -10.957 -11.132 15.626 hybrid contribution -0.901 -0.584 0.559 1.210 sum -1.327 -11.541 -10.574 15.708 Atomic orbital electron populations 1.21790 0.96126 1.01211 1.00136 1.20462 0.92886 0.93644 0.87165 0.95729 1.22075 0.95104 1.00645 0.99206 1.21694 0.97077 1.00189 0.96663 1.21910 0.97048 0.81245 0.98708 0.90408 1.45823 1.29087 1.08366 1.49958 1.17427 0.84373 0.83060 0.80415 1.90828 1.24508 1.84301 1.40341 1.20207 1.02999 0.98739 0.98848 1.16762 0.87994 0.91761 0.86386 1.91595 1.62346 1.91658 1.63565 1.20895 1.01263 0.97140 1.03550 1.16878 0.92665 0.80680 0.94454 1.91571 1.82891 1.39800 1.95669 1.21049 1.06008 0.93218 1.02386 1.16958 0.91811 0.87322 0.85601 1.91792 1.89165 1.68487 1.57541 1.21200 0.83861 0.97165 0.94292 1.44035 1.02651 1.64664 1.19194 1.19047 0.94769 1.38030 0.86047 0.91523 1.25032 0.97560 0.99378 0.96951 1.69970 1.23022 1.44521 1.16866 0.86468 0.79818 0.80371 0.81253 1.20901 1.21921 1.20587 0.93001 0.92051 0.94463 0.92775 0.92795 0.90894 0.92938 0.76805 0.82292 0.82112 0.88340 0.95486 0.93689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 7.95 37.16 0.30 -2.11 16 2 C 0.17 3.19 3.50 -67.60 -0.24 2.95 16 3 H 0.03 0.51 8.14 -51.92 -0.42 0.08 16 4 C -0.13 -2.04 5.21 -26.61 -0.14 -2.18 16 5 C -0.12 -1.83 5.58 -26.69 -0.15 -1.98 16 6 C 0.12 2.20 2.81 -67.82 -0.19 2.01 16 7 H 0.08 1.51 7.58 -51.93 -0.39 1.12 16 8 N -0.68 -12.33 4.91 -54.77 -0.27 -12.60 16 9 C 0.56 10.94 6.50 -12.52 -0.08 10.86 16 10 O -0.52 -12.12 16.77 5.27 0.09 -12.04 16 11 C -0.20 -3.21 5.64 -104.86 -0.59 -3.80 16 12 C 0.19 2.46 7.29 -38.98 -0.28 2.18 16 13 F -0.11 -1.51 16.83 2.25 0.04 -1.47 16 14 C -0.21 -2.10 9.99 -39.50 -0.39 -2.49 16 15 C 0.17 1.80 7.30 -39.32 -0.29 1.51 16 16 F -0.12 -1.19 17.26 2.25 0.04 -1.16 16 17 C -0.21 -2.43 9.99 -39.50 -0.39 -2.83 16 18 C 0.20 3.15 7.29 -38.98 -0.28 2.87 16 19 F -0.09 -1.81 16.83 2.25 0.04 -1.77 16 20 C 0.16 3.81 4.88 -3.71 -0.02 3.79 16 21 N -0.58 -13.59 2.91 -164.77 -0.48 -14.07 16 22 C -0.25 -6.48 8.60 -15.06 -0.13 -6.61 16 23 H 0.07 1.70 6.21 -52.49 -0.33 1.38 16 24 C 0.01 0.27 4.97 -17.42 -0.09 0.19 16 25 N -0.90 -26.31 11.13 55.49 0.62 -25.69 16 26 Si 0.89 21.93 29.58 -169.99 -5.03 16.90 16 27 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 28 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 29 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 30 H 0.05 0.93 7.40 -51.93 -0.38 0.54 16 31 H 0.06 1.20 7.66 -51.93 -0.40 0.81 16 32 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.05 0.83 6.40 -51.93 -0.33 0.49 16 35 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 36 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.40 6.43 6.76 -40.82 -0.28 6.15 16 38 H 0.16 1.16 8.06 -52.49 -0.42 0.73 16 39 H 0.16 1.58 8.06 -52.49 -0.42 1.16 16 40 H 0.10 2.76 6.08 -51.93 -0.32 2.44 16 41 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 356.38 15.07 5.37 5.37 Total: -1.00 -30.95 356.38 -7.50 -38.45 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: -4.94 Total: 3.73 kcal Atomic # 6 Polarization: 7.32 SS G_CDS: -2.97 Total: 4.36 kcal Atomic # 7 Polarization: -52.24 SS G_CDS: -0.13 Total: -52.37 kcal Atomic # 8 Polarization: -12.12 SS G_CDS: 0.09 Total: -12.04 kcal Atomic # 9 Polarization: -4.51 SS G_CDS: 0.11 Total: -4.40 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.03 Total: 16.90 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.95 -7.50 -38.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071783144.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.911 kcal (2) G-P(sol) polarization free energy of solvation -30.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds