Wall clock time and date at job start Wed Apr 1 2020 02:12:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09008 * 109.58362 * 2 1 4 4 C 1.53190 * 109.58728 * 239.71766 * 2 1 3 5 5 C 1.53046 * 109.31100 * 185.57755 * 4 2 1 6 6 C 1.53041 * 109.53877 * 61.35784 * 5 4 2 7 7 H 1.09005 * 109.49625 * 178.64641 * 6 5 4 8 8 N 1.46500 * 109.49294 * 58.59034 * 6 5 4 9 9 C 1.34783 * 120.00083 * 154.99671 * 8 6 5 10 10 O 1.21605 * 119.99897 * 0.02562 * 9 8 6 11 11 C 1.47416 * 120.00287 * 179.97438 * 9 8 6 12 12 C 1.39976 * 120.16238 * 89.72699 * 11 9 8 13 13 F 1.35100 * 120.08640 * 359.97348 * 12 11 9 14 14 C 1.38102 * 119.83174 * 179.70049 * 12 11 9 15 15 C 1.38599 * 120.16363 * 0.59815 * 14 12 11 16 16 F 1.35102 * 119.83474 * 179.69961 * 15 14 12 17 17 C 1.38597 * 120.33221 * 359.67703 * 15 14 12 18 18 C 1.38101 * 120.16355 * 0.02562 * 17 15 14 19 19 F 1.35103 * 120.08485 * 180.02562 * 18 17 15 20 20 C 1.53182 * 109.31739 * 298.63674 * 6 5 4 21 21 N 1.46924 * 109.58754 * 120.41938 * 2 1 3 22 22 C 1.36933 * 120.62918 * 353.38467 * 21 2 1 23 23 H 1.07996 * 120.00672 * 29.50526 * 22 21 2 24 24 C 1.38821 * 119.99756 * 209.50665 * 22 21 2 25 25 N 1.31626 * 119.99857 * 14.30668 * 24 22 21 26 26 Si 1.86796 * 120.00063 * 194.31215 * 24 22 21 27 27 H 1.48497 * 109.47583 * 89.99689 * 26 24 22 28 28 H 1.48508 * 109.47067 * 209.99864 * 26 24 22 29 29 H 1.48505 * 109.47093 * 329.99609 * 26 24 22 30 30 H 1.08997 * 109.46751 * 180.28421 * 1 2 3 31 31 H 1.08995 * 109.47240 * 300.28492 * 1 2 3 32 32 H 1.08996 * 109.47009 * 60.28694 * 1 2 3 33 33 H 1.08993 * 109.50383 * 65.62324 * 4 2 1 34 34 H 1.08999 * 109.49675 * 305.52371 * 4 2 1 35 35 H 1.09005 * 109.45663 * 301.34371 * 5 4 2 36 36 H 1.09003 * 109.44817 * 181.37537 * 5 4 2 37 37 H 0.97002 * 120.00577 * 335.27396 * 8 6 5 38 38 H 1.08000 * 119.91636 * 180.32133 * 14 12 11 39 39 H 1.07995 * 119.92086 * 180.02562 * 17 15 14 40 40 H 1.09002 * 109.58903 * 174.42111 * 20 6 5 41 41 H 1.09000 * 109.59040 * 294.84696 * 20 6 5 42 42 H 0.96996 * 119.99583 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0436 -0.7278 -1.2463 5 6 3.5676 -0.8464 -1.1711 6 6 3.9570 -1.6656 0.0615 7 1 5.0413 -1.7700 0.1013 8 7 3.3407 -2.9922 -0.0184 9 6 3.8973 -4.0341 0.6307 10 8 4.9108 -3.8728 1.2831 11 6 3.2768 -5.3690 0.5507 12 6 3.6447 -6.2556 -0.4680 13 9 4.5698 -5.8905 -1.3823 14 6 3.0636 -7.5068 -0.5328 15 6 2.1094 -7.8806 0.4003 16 9 1.5408 -9.1040 0.3270 17 6 1.7359 -7.0060 1.4085 18 6 2.3127 -5.7538 1.4897 19 9 1.9478 -4.9027 2.4735 20 6 3.4652 -0.9484 1.3226 21 7 2.0226 -0.7009 1.1937 22 6 1.1538 -1.1153 2.1676 23 1 0.1382 -1.3769 1.9096 24 6 1.5784 -1.1991 3.4866 25 7 2.7044 -0.6245 3.8532 26 14 0.5519 -2.1274 4.7410 27 1 0.9776 -3.5497 4.7741 28 1 0.7439 -1.5219 6.0834 29 1 -0.8821 -2.0486 4.3631 30 1 -0.3633 -1.0276 0.0051 31 1 -0.3633 0.5182 0.8874 32 1 -0.3633 0.5094 -0.8925 33 1 1.7661 -0.1642 -2.1370 34 1 1.6031 -1.7237 -1.2934 35 1 4.0062 0.1489 -1.0991 36 1 3.9377 -1.3423 -2.0685 37 1 2.5343 -3.1217 -0.5417 38 1 3.3502 -8.1939 -1.3152 39 1 0.9920 -7.3044 2.1323 40 1 3.6519 -1.5743 2.1953 41 1 3.9904 0.0004 1.4318 42 1 3.0013 -0.6833 4.7748 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071783144.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:12:46 Heat of formation + Delta-G solvation = -137.388490 kcal Electronic energy + Delta-G solvation = -31619.197859 eV Core-core repulsion = 26956.752500 eV Total energy + Delta-G solvation = -4662.445359 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.130 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -50.35452 -50.31370 -50.25166 -41.27482 -39.73793 -38.86480 -35.85392 -34.53045 -32.91919 -31.87406 -31.77695 -31.34689 -27.89589 -26.82231 -25.30459 -24.42750 -23.88767 -22.52261 -21.99243 -20.43733 -19.86980 -19.20797 -19.13237 -18.25854 -17.58586 -17.25470 -17.14244 -17.12263 -16.81550 -16.60531 -16.48280 -16.28770 -15.88530 -15.68801 -15.51755 -15.43882 -15.16308 -14.75635 -14.44222 -14.07897 -13.92859 -13.69708 -13.49991 -13.14084 -12.99668 -12.90512 -12.83971 -12.63047 -12.56888 -12.41790 -12.11640 -12.07408 -11.58830 -11.32790 -11.16763 -11.06637 -10.50952 -10.20136 -10.16417 -10.09409 -8.56584 -7.80695 -5.26175 -0.66311 -0.42480 1.32033 1.39789 1.45412 1.49045 1.79039 2.08914 2.24871 2.51898 2.87282 2.95289 3.36097 3.39097 3.50741 3.60867 3.63430 3.99153 4.08009 4.17157 4.34312 4.39693 4.42135 4.45792 4.47441 4.63053 4.70916 4.73296 4.79728 4.95041 5.01941 5.05773 5.10655 5.25403 5.30772 5.36662 5.55014 5.57822 5.63880 5.73097 5.74645 6.43421 6.45688 7.09442 7.20378 7.94336 8.44627 9.24618 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.010729 B = 0.005234 C = 0.004210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2609.133603 B = 5348.106746 C = 6649.554358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.153 3.847 3 H 0.016 0.984 4 C -0.120 4.120 5 C -0.109 4.109 6 C 0.124 3.876 7 H 0.067 0.933 8 N -0.674 5.674 9 C 0.559 3.441 10 O -0.574 6.574 11 C -0.223 4.223 12 C 0.192 3.808 13 F -0.116 7.116 14 C -0.177 4.177 15 C 0.191 3.809 16 F -0.109 7.109 17 C -0.190 4.190 18 C 0.174 3.826 19 F -0.128 7.128 20 C 0.172 3.828 21 N -0.594 5.594 22 C -0.231 4.231 23 H 0.075 0.925 24 C -0.049 4.049 25 N -0.937 5.937 26 Si 0.939 3.061 27 H -0.287 1.287 28 H -0.303 1.303 29 H -0.262 1.262 30 H 0.050 0.950 31 H 0.034 0.966 32 H 0.076 0.924 33 H 0.092 0.908 34 H 0.060 0.940 35 H 0.076 0.924 36 H 0.086 0.914 37 H 0.408 0.592 38 H 0.199 0.801 39 H 0.181 0.819 40 H 0.048 0.952 41 H 0.000 1.000 42 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.983 -13.413 -15.365 20.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.048 3.952 3 H 0.033 0.967 4 C -0.158 4.158 5 C -0.147 4.147 6 C 0.018 3.982 7 H 0.086 0.914 8 N -0.323 5.323 9 C 0.344 3.656 10 O -0.455 6.455 11 C -0.228 4.228 12 C 0.171 3.829 13 F -0.094 7.094 14 C -0.196 4.196 15 C 0.170 3.830 16 F -0.087 7.087 17 C -0.210 4.210 18 C 0.154 3.846 19 F -0.106 7.106 20 C 0.044 3.956 21 N -0.318 5.318 22 C -0.362 4.362 23 H 0.092 0.908 24 C -0.244 4.244 25 N -0.585 5.585 26 Si 0.769 3.231 27 H -0.214 1.214 28 H -0.231 1.231 29 H -0.186 1.186 30 H 0.069 0.931 31 H 0.053 0.947 32 H 0.095 0.905 33 H 0.111 0.889 34 H 0.079 0.921 35 H 0.095 0.905 36 H 0.105 0.895 37 H 0.245 0.755 38 H 0.216 0.784 39 H 0.198 0.802 40 H 0.066 0.934 41 H 0.018 0.982 42 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -2.252 -13.228 -14.778 19.961 hybrid contribution -0.372 0.076 1.583 1.628 sum -2.624 -13.152 -13.195 18.814 Atomic orbital electron populations 1.21717 0.94700 1.01272 1.00819 1.20780 0.94174 0.93271 0.86958 0.96660 1.21966 0.94623 1.00995 0.98261 1.21671 0.97396 0.99945 0.95696 1.21645 0.96431 0.81875 0.98263 0.91443 1.45760 1.29237 1.07774 1.49573 1.18034 0.83745 0.84648 0.79182 1.90789 1.26901 1.85455 1.42306 1.20010 1.04277 0.97546 1.00942 1.16757 0.88211 0.92168 0.85735 1.91591 1.62541 1.91828 1.63467 1.21184 0.99137 0.95902 1.03399 1.16755 0.92059 0.80537 0.93600 1.91618 1.82614 1.38993 1.95488 1.21170 1.05359 0.91607 1.02834 1.17203 0.93408 0.88422 0.85572 1.91697 1.89803 1.69923 1.59188 1.20845 0.84369 0.95390 0.94954 1.44238 1.02114 1.65355 1.20058 1.19343 0.95071 1.35457 0.86303 0.90788 1.25667 0.98702 1.01135 0.98908 1.70147 1.25023 1.47089 1.16222 0.85671 0.79613 0.78855 0.79005 1.21439 1.23074 1.18617 0.93116 0.94679 0.90549 0.88920 0.92089 0.90491 0.89510 0.75490 0.78426 0.80190 0.93361 0.98234 0.94982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.26 7.95 71.98 0.57 -3.69 16 2 C 0.15 5.71 3.50 44.98 0.16 5.87 16 3 H 0.02 0.62 8.14 -2.38 -0.02 0.60 16 4 C -0.12 -3.31 5.21 30.67 0.16 -3.15 16 5 C -0.11 -3.12 5.58 30.62 0.17 -2.95 16 6 C 0.12 4.76 2.81 45.07 0.13 4.89 16 7 H 0.07 2.73 7.58 -2.38 -0.02 2.72 16 8 N -0.67 -24.48 4.91 -445.44 -2.19 -26.67 16 9 C 0.56 22.39 6.50 86.66 0.56 22.95 16 10 O -0.57 -28.28 16.77 -4.05 -0.07 -28.34 16 11 C -0.22 -7.01 5.64 -20.02 -0.11 -7.12 16 12 C 0.19 4.50 7.29 22.66 0.17 4.67 16 13 F -0.12 -2.85 16.83 44.97 0.76 -2.09 16 14 C -0.18 -2.80 9.99 22.32 0.22 -2.58 16 15 C 0.19 3.20 7.30 22.44 0.16 3.37 16 16 F -0.11 -1.64 17.26 44.97 0.78 -0.86 16 17 C -0.19 -4.05 9.99 22.32 0.22 -3.83 16 18 C 0.17 5.37 7.29 22.66 0.17 5.54 16 19 F -0.13 -5.23 16.83 44.97 0.76 -4.47 16 20 C 0.17 8.53 4.88 86.36 0.42 8.95 16 21 N -0.59 -28.31 2.91 -675.22 -1.96 -30.27 16 22 C -0.23 -12.29 8.60 84.04 0.72 -11.57 16 23 H 0.07 3.79 6.21 -2.91 -0.02 3.77 16 24 C -0.05 -2.84 4.97 84.86 0.42 -2.41 16 25 N -0.94 -58.44 11.13 21.66 0.24 -58.20 16 26 Si 0.94 46.81 29.58 68.60 2.03 48.84 16 27 H -0.29 -14.41 7.11 99.48 0.71 -13.70 16 28 H -0.30 -15.51 7.11 99.48 0.71 -14.80 16 29 H -0.26 -12.08 7.11 99.48 0.71 -11.37 16 30 H 0.05 1.69 7.40 -2.39 -0.02 1.67 16 31 H 0.03 1.33 7.66 -2.39 -0.02 1.31 16 32 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.06 1.63 6.40 -2.39 -0.02 1.62 16 35 H 0.08 2.18 8.14 -2.38 -0.02 2.16 16 36 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.41 12.74 6.76 -92.71 -0.63 12.12 16 38 H 0.20 1.68 8.06 -2.91 -0.02 1.65 16 39 H 0.18 3.08 8.06 -2.91 -0.02 3.05 16 40 H 0.05 2.91 6.08 -2.39 -0.01 2.89 16 41 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 42 H 0.24 14.96 8.31 -92.71 -0.77 14.19 16 Total: -1.00 -74.39 356.38 4.94 -69.45 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: 0.46 Total: 13.70 kcal Atomic # 6 Polarization: 14.78 SS G_CDS: 4.14 Total: 18.92 kcal Atomic # 7 Polarization: -111.23 SS G_CDS: -3.91 Total: -115.14 kcal Atomic # 8 Polarization: -28.28 SS G_CDS: -0.07 Total: -28.34 kcal Atomic # 9 Polarization: -9.72 SS G_CDS: 2.29 Total: -7.43 kcal Atomic # 14 Polarization: 46.81 SS G_CDS: 2.03 Total: 48.84 kcal Total: -74.39 4.94 -69.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071783144.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.938 kcal (2) G-P(sol) polarization free energy of solvation -74.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds