Wall clock time and date at job start Wed Apr 1 2020 02:12:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.58045 * 2 1 4 4 C 1.53189 * 109.70151 * 239.64684 * 2 1 3 5 5 C 1.53042 * 109.33694 * 185.52269 * 4 2 1 6 6 C 1.53043 * 109.53795 * 61.31762 * 5 4 2 7 7 H 1.09000 * 109.49750 * 58.64894 * 6 5 4 8 8 N 1.46497 * 109.49647 * 178.71539 * 6 5 4 9 9 C 1.34779 * 120.00455 * 204.93530 * 8 6 5 10 10 O 1.21602 * 119.99260 * 359.97438 * 9 8 6 11 11 C 1.47416 * 120.00252 * 179.97438 * 9 8 6 12 12 C 1.39977 * 120.16636 * 269.99869 * 11 9 8 13 13 F 1.35099 * 120.08052 * 0.02562 * 12 11 9 14 14 C 1.38101 * 119.83289 * 179.97438 * 12 11 9 15 15 C 1.38592 * 120.16589 * 0.27139 * 14 12 11 16 16 F 1.35095 * 119.83825 * 179.72757 * 15 14 12 17 17 C 1.38604 * 120.32982 * 359.44796 * 15 14 12 18 18 C 1.38092 * 120.16497 * 0.55772 * 17 15 14 19 19 F 1.35101 * 120.08904 * 179.74355 * 18 17 15 20 20 C 1.53196 * 109.33650 * 298.67926 * 6 5 4 21 21 N 1.46922 * 109.58577 * 120.28381 * 2 1 3 22 22 C 1.36936 * 120.63517 * 353.51832 * 21 2 1 23 23 H 1.07997 * 119.99743 * 29.03604 * 22 21 2 24 24 C 1.38810 * 120.00376 * 209.04248 * 22 21 2 25 25 N 1.31623 * 119.99640 * 15.00585 * 24 22 21 26 26 Si 1.86794 * 120.00171 * 195.00769 * 24 22 21 27 27 H 1.48496 * 109.47172 * 59.99778 * 26 24 22 28 28 H 1.48505 * 109.47078 * 179.97438 * 26 24 22 29 29 H 1.48506 * 109.47127 * 299.99811 * 26 24 22 30 30 H 1.09009 * 109.47027 * 299.71621 * 1 2 3 31 31 H 1.08996 * 109.47349 * 59.71350 * 1 2 3 32 32 H 1.08996 * 109.47541 * 179.71723 * 1 2 3 33 33 H 1.08999 * 109.49702 * 305.45787 * 4 2 1 34 34 H 1.08996 * 109.49951 * 65.52237 * 4 2 1 35 35 H 1.08995 * 109.43059 * 301.31066 * 5 4 2 36 36 H 1.09003 * 109.48624 * 181.35117 * 5 4 2 37 37 H 0.97005 * 120.00173 * 24.93147 * 8 6 5 38 38 H 1.08002 * 119.91571 * 180.02562 * 14 12 11 39 39 H 1.07998 * 119.91792 * 180.25188 * 17 15 14 40 40 H 1.09000 * 109.58290 * 174.40390 * 20 6 5 41 41 H 1.08997 * 109.58621 * 294.83499 * 20 6 5 42 42 H 0.97005 * 119.99506 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0464 -0.7288 -1.2445 5 6 3.5705 -0.8449 -1.1678 6 6 3.9601 -1.6608 0.0670 7 1 3.5040 -2.6490 0.0089 8 7 5.4177 -1.7974 0.1228 9 6 5.9726 -2.8378 0.7756 10 8 5.2633 -3.6628 1.3187 11 6 7.4392 -2.9755 0.8313 12 6 8.1165 -3.6930 -0.1617 13 9 7.4277 -4.2616 -1.1753 14 6 9.4907 -3.8173 -0.1031 15 6 10.1985 -3.2385 0.9385 16 9 11.5421 -3.3689 0.9923 17 6 9.5354 -2.5217 1.9221 18 6 8.1616 -2.3889 1.8771 19 9 7.5163 -1.6943 2.8395 20 6 3.4654 -0.9424 1.3264 21 7 2.0225 -0.6980 1.1953 22 6 1.1534 -1.1126 2.1690 23 1 0.1365 -1.3693 1.9114 24 6 1.5794 -1.2028 3.4870 25 7 2.7011 -0.6222 3.8572 26 14 0.5608 -2.1481 4.7352 27 1 0.4344 -3.5627 4.3015 28 1 1.2282 -2.0951 6.0608 29 1 -0.7897 -1.5386 4.8356 30 1 -0.3633 0.5095 0.8926 31 1 -0.3634 0.5182 -0.8874 32 1 -0.3634 -1.0276 -0.0051 33 1 1.6079 -1.7256 -1.2905 34 1 1.7683 -0.1675 -2.1365 35 1 4.0070 0.1513 -1.0975 36 1 3.9428 -1.3419 -2.0637 37 1 5.9835 -1.1391 -0.3102 38 1 10.0146 -4.3702 -0.8687 39 1 10.0940 -2.0700 2.7286 40 1 3.6523 -1.5665 2.2002 41 1 3.9886 0.0076 1.4345 42 1 2.9990 -0.6855 4.7783 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071783145.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:12:50 Heat of formation + Delta-G solvation = -141.540968 kcal Electronic energy + Delta-G solvation = -30502.196464 eV Core-core repulsion = 25839.571040 eV Total energy + Delta-G solvation = -4662.625424 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.130 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -50.38240 -50.36221 -50.25350 -41.27770 -39.71117 -38.96684 -36.12584 -34.69477 -32.93356 -31.89108 -31.84465 -31.39636 -27.81449 -26.88540 -25.19036 -24.45138 -24.00629 -22.51402 -21.78875 -21.03118 -19.87053 -19.16470 -19.04141 -18.36762 -17.75758 -17.29031 -17.24064 -17.14554 -16.92940 -16.64500 -16.50774 -16.32562 -15.90138 -15.66598 -15.51304 -15.42344 -15.21266 -14.99164 -14.50756 -14.17679 -13.93810 -13.58139 -13.53103 -13.16017 -13.08841 -12.92065 -12.78424 -12.71244 -12.58519 -12.31599 -12.15499 -12.02945 -11.71406 -11.52327 -11.21818 -11.12546 -10.54812 -10.25169 -10.20971 -10.18738 -8.64528 -7.86232 -5.32579 -0.68788 -0.43604 1.22712 1.39637 1.45435 1.49313 1.75469 1.95651 2.21753 2.49346 2.85721 2.92451 3.25493 3.33184 3.47976 3.59074 3.70870 3.91193 4.06190 4.21976 4.33290 4.36078 4.37360 4.40028 4.42942 4.57087 4.69222 4.71334 4.77453 4.86767 4.99674 5.04879 5.15214 5.23707 5.28882 5.34638 5.36595 5.54098 5.59827 5.69007 5.75960 6.31377 6.42591 7.01127 7.15211 7.88496 8.37622 9.18844 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.013919 B = 0.003522 C = 0.003058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2011.206841 B = 7947.800737 C = 9154.070985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.153 3.847 3 H 0.023 0.977 4 C -0.117 4.117 5 C -0.107 4.107 6 C 0.128 3.872 7 H 0.054 0.946 8 N -0.692 5.692 9 C 0.557 3.443 10 O -0.568 6.568 11 C -0.223 4.223 12 C 0.191 3.809 13 F -0.119 7.119 14 C -0.177 4.177 15 C 0.191 3.809 16 F -0.109 7.109 17 C -0.184 4.184 18 C 0.179 3.821 19 F -0.128 7.128 20 C 0.180 3.820 21 N -0.603 5.603 22 C -0.253 4.253 23 H 0.076 0.924 24 C -0.053 4.053 25 N -0.933 5.933 26 Si 0.956 3.044 27 H -0.286 1.286 28 H -0.297 1.297 29 H -0.266 1.266 30 H 0.038 0.962 31 H 0.079 0.921 32 H 0.045 0.955 33 H 0.052 0.948 34 H 0.098 0.902 35 H 0.075 0.925 36 H 0.087 0.913 37 H 0.414 0.586 38 H 0.196 0.804 39 H 0.187 0.813 40 H 0.043 0.957 41 H -0.002 1.002 42 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.982 -1.865 -13.500 21.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.048 3.952 3 H 0.040 0.960 4 C -0.157 4.157 5 C -0.145 4.145 6 C 0.022 3.978 7 H 0.072 0.928 8 N -0.343 5.343 9 C 0.342 3.658 10 O -0.447 6.447 11 C -0.228 4.228 12 C 0.170 3.830 13 F -0.097 7.097 14 C -0.197 4.197 15 C 0.171 3.829 16 F -0.087 7.087 17 C -0.203 4.203 18 C 0.158 3.842 19 F -0.106 7.106 20 C 0.053 3.947 21 N -0.327 5.327 22 C -0.384 4.384 23 H 0.094 0.906 24 C -0.248 4.248 25 N -0.580 5.580 26 Si 0.785 3.215 27 H -0.213 1.213 28 H -0.223 1.223 29 H -0.191 1.191 30 H 0.057 0.943 31 H 0.098 0.902 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.117 0.883 35 H 0.093 0.907 36 H 0.105 0.895 37 H 0.251 0.749 38 H 0.213 0.787 39 H 0.204 0.796 40 H 0.061 0.939 41 H 0.016 0.984 42 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 16.482 -2.409 -12.975 21.114 hybrid contribution -0.430 -0.163 1.354 1.430 sum 16.051 -2.572 -11.621 19.983 Atomic orbital electron populations 1.21733 0.94670 1.01171 1.01107 1.20820 0.94361 0.93415 0.86624 0.95957 1.21954 0.94317 1.00976 0.98437 1.21658 0.97311 0.99976 0.95544 1.21678 0.78287 0.99523 0.98288 0.92807 1.45913 1.08264 1.26152 1.53928 1.18188 0.87421 0.81785 0.78376 1.90856 1.63835 1.43887 1.46122 1.19942 0.93725 1.08954 1.00178 1.16792 0.89358 0.92775 0.84049 1.91597 1.79691 1.81809 1.56589 1.21194 0.90948 1.05397 1.02132 1.16787 0.77693 0.95031 0.93421 1.91623 1.27772 1.93491 1.95830 1.21180 0.91371 1.04503 1.03248 1.17056 0.90078 0.91901 0.85135 1.91642 1.82020 1.76056 1.60900 1.20743 0.83906 0.95298 0.94744 1.44318 1.02376 1.65729 1.20311 1.19461 0.95287 1.36876 0.86736 0.90637 1.25800 0.99021 1.00986 0.98996 1.70154 1.25115 1.46193 1.16494 0.85504 0.78816 0.78943 0.78276 1.21261 1.22332 1.19143 0.94325 0.90174 0.93543 0.92882 0.88327 0.90655 0.89455 0.74894 0.78653 0.79574 0.93851 0.98351 0.94655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.67 7.95 71.98 0.57 -4.10 16 2 C 0.15 6.10 3.49 44.97 0.16 6.26 16 3 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 4 C -0.12 -3.65 5.38 30.67 0.16 -3.49 16 5 C -0.11 -3.18 5.36 30.62 0.16 -3.02 16 6 C 0.13 5.12 2.60 45.07 0.12 5.24 16 7 H 0.05 2.50 7.58 -2.39 -0.02 2.48 16 8 N -0.69 -23.66 5.08 -445.44 -2.26 -25.92 16 9 C 0.56 21.30 6.50 86.66 0.56 21.86 16 10 O -0.57 -28.18 16.77 -4.04 -0.07 -28.24 16 11 C -0.22 -6.27 5.64 -20.01 -0.11 -6.39 16 12 C 0.19 4.07 7.29 22.66 0.17 4.24 16 13 F -0.12 -2.81 16.83 44.97 0.76 -2.05 16 14 C -0.18 -2.41 9.99 22.32 0.22 -2.18 16 15 C 0.19 2.60 7.30 22.44 0.16 2.76 16 16 F -0.11 -1.35 17.26 44.97 0.78 -0.57 16 17 C -0.18 -3.04 9.99 22.32 0.22 -2.82 16 18 C 0.18 4.57 7.29 22.66 0.17 4.74 16 19 F -0.13 -4.24 16.83 44.97 0.76 -3.49 16 20 C 0.18 9.24 4.86 86.36 0.42 9.66 16 21 N -0.60 -31.03 2.99 -675.24 -2.02 -33.05 16 22 C -0.25 -14.40 8.60 84.03 0.72 -13.68 16 23 H 0.08 4.12 6.21 -2.91 -0.02 4.10 16 24 C -0.05 -3.14 4.96 84.86 0.42 -2.72 16 25 N -0.93 -58.95 11.14 21.65 0.24 -58.71 16 26 Si 0.96 48.25 29.58 68.60 2.03 50.28 16 27 H -0.29 -14.41 7.11 99.48 0.71 -13.71 16 28 H -0.30 -15.15 7.11 99.48 0.71 -14.44 16 29 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 30 H 0.04 1.54 7.62 -2.38 -0.02 1.53 16 31 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 32 H 0.05 1.72 7.44 -2.39 -0.02 1.70 16 33 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 35 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.41 10.70 8.59 -92.70 -0.80 9.90 16 38 H 0.20 1.34 8.06 -2.91 -0.02 1.32 16 39 H 0.19 2.16 8.06 -2.91 -0.02 2.13 16 40 H 0.04 2.69 6.06 -2.39 -0.01 2.67 16 41 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 42 H 0.24 15.21 8.31 -92.70 -0.77 14.44 16 Total: -1.00 -78.63 359.89 4.62 -74.01 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: 0.28 Total: 11.39 kcal Atomic # 6 Polarization: 12.23 SS G_CDS: 4.13 Total: 16.36 kcal Atomic # 7 Polarization: -113.64 SS G_CDS: -4.04 Total: -117.68 kcal Atomic # 8 Polarization: -28.18 SS G_CDS: -0.07 Total: -28.24 kcal Atomic # 9 Polarization: -8.40 SS G_CDS: 2.29 Total: -6.11 kcal Atomic # 14 Polarization: 48.25 SS G_CDS: 2.03 Total: 50.28 kcal Total: -78.63 4.62 -74.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071783145.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.536 kcal (2) G-P(sol) polarization free energy of solvation -78.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds