Wall clock time and date at job start Wed Apr 1 2020 02:13:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.58417 * 2 1 4 4 C 1.53193 * 109.58540 * 120.28501 * 2 1 3 5 5 C 1.53041 * 109.30926 * 174.42304 * 4 2 1 6 6 C 1.53040 * 109.53872 * 298.63030 * 5 4 2 7 7 H 1.09002 * 109.49778 * 301.42013 * 6 5 4 8 8 N 1.46498 * 109.49599 * 181.35373 * 6 5 4 9 9 C 1.34774 * 119.99520 * 155.00317 * 8 6 5 10 10 O 1.21599 * 120.00529 * 0.02562 * 9 8 6 11 11 C 1.47427 * 119.99582 * 179.97438 * 9 8 6 12 12 C 1.39980 * 120.16200 * 89.72215 * 11 9 8 13 13 F 1.35101 * 120.08482 * 0.02562 * 12 11 9 14 14 C 1.38102 * 119.83211 * 179.76807 * 12 11 9 15 15 C 1.38605 * 120.16141 * 0.51054 * 14 12 11 16 16 F 1.35099 * 119.83423 * 179.72151 * 15 14 12 17 17 C 1.38597 * 120.33085 * 359.73865 * 15 14 12 18 18 C 1.38096 * 120.16637 * 0.02562 * 17 15 14 19 19 F 1.35104 * 120.08436 * 180.02562 * 18 17 15 20 20 C 1.53188 * 109.30982 * 61.36767 * 6 5 4 21 21 N 1.46923 * 109.58311 * 239.57484 * 2 1 3 22 22 C 1.36929 * 120.63553 * 6.57815 * 21 2 1 23 23 H 1.08001 * 120.00141 * 330.16332 * 22 21 2 24 24 C 1.38812 * 120.00149 * 150.16452 * 22 21 2 25 25 N 1.31620 * 119.99919 * 344.51006 * 24 22 21 26 26 Si 1.86802 * 120.00159 * 164.50925 * 24 22 21 27 27 H 1.48507 * 109.47053 * 60.00245 * 26 24 22 28 28 H 1.48500 * 109.47180 * 180.02562 * 26 24 22 29 29 H 1.48501 * 109.47482 * 300.00150 * 26 24 22 30 30 H 1.08995 * 109.46794 * 299.71564 * 1 2 3 31 31 H 1.08996 * 109.47230 * 179.71627 * 1 2 3 32 32 H 1.09006 * 109.47071 * 59.71528 * 1 2 3 33 33 H 1.09000 * 109.49221 * 294.37191 * 4 2 1 34 34 H 1.08994 * 109.49797 * 54.43407 * 4 2 1 35 35 H 1.08996 * 109.46268 * 58.65386 * 5 4 2 36 36 H 1.09001 * 109.45248 * 178.61086 * 5 4 2 37 37 H 0.96997 * 120.00181 * 334.99816 * 8 6 5 38 38 H 1.07995 * 119.92010 * 180.25177 * 14 12 11 39 39 H 1.08006 * 119.91877 * 180.02562 * 17 15 14 40 40 H 1.09004 * 109.58843 * 65.15599 * 20 6 5 41 41 H 1.09002 * 109.58725 * 185.58045 * 20 6 5 42 42 H 0.97003 * 120.00224 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7279 1.2463 5 6 3.5675 -0.8465 1.1712 6 6 3.9570 -1.6658 -0.0614 7 1 3.4983 -2.6529 -0.0019 8 7 5.4142 -1.8062 -0.1148 9 6 5.9673 -2.8500 -0.7636 10 8 5.2568 -3.6750 -1.3051 11 6 7.4338 -2.9909 -0.8178 12 6 8.1095 -3.7014 0.1813 13 9 7.4193 -4.2611 1.1989 14 6 9.4829 -3.8333 0.1212 15 6 10.1931 -3.2553 -0.9193 16 9 11.5371 -3.3837 -0.9685 17 6 9.5315 -2.5460 -1.9093 18 6 8.1580 -2.4097 -1.8652 19 9 7.5147 -1.7184 -2.8314 20 6 3.4651 -0.9486 -1.3225 21 7 2.0225 -0.7010 -1.1936 22 6 1.1537 -1.1162 -2.1671 23 1 0.1399 -1.3834 -1.9079 24 6 1.5759 -1.1937 -3.4872 25 7 2.6864 -0.5931 -3.8593 26 14 0.5680 -2.1504 -4.7356 27 1 -0.7927 -1.5627 -4.8281 28 1 1.2292 -2.0807 -6.0635 29 1 0.4666 -3.5687 -4.3076 30 1 -0.3633 0.5094 0.8925 31 1 -0.3633 -1.0276 -0.0051 32 1 -0.3633 0.5183 -0.8875 33 1 1.7660 -0.1641 2.1370 34 1 1.6025 -1.7234 1.2938 35 1 4.0062 0.1487 1.0991 36 1 3.9378 -1.3422 2.0686 37 1 5.9810 -1.1479 0.3168 38 1 10.0052 -4.3846 0.8890 39 1 10.0916 -2.0987 -2.7172 40 1 3.9904 0.0002 -1.4317 41 1 3.6518 -1.5746 -2.1952 42 1 2.9817 -0.6475 -4.7817 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071783146.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:13:06 Heat of formation + Delta-G solvation = -120.917698 kcal Electronic energy + Delta-G solvation = -30496.049139 eV Core-core repulsion = 25834.318007 eV Total energy + Delta-G solvation = -4661.731132 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.130 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -49.54472 -49.44515 -49.28032 -39.89811 -38.52195 -37.47830 -34.47755 -32.82128 -31.66565 -31.05531 -30.27942 -29.78178 -26.13928 -25.09553 -24.04840 -23.58165 -22.28275 -21.12072 -20.26135 -19.36755 -18.95766 -18.25046 -17.78648 -16.75400 -16.41634 -16.34779 -16.26241 -15.87044 -15.64137 -15.51547 -15.47463 -15.01592 -14.74948 -14.16697 -14.10894 -13.78809 -13.68016 -13.36223 -12.91763 -12.75829 -12.64631 -12.42318 -12.31234 -12.07860 -11.85403 -11.45848 -11.12072 -10.88962 -10.67981 -10.55886 -10.40450 -10.26781 -10.02534 -9.91182 -9.53204 -9.47365 -9.37461 -9.26256 -8.64084 -8.39885 -6.59530 -5.72233 -3.17311 0.20683 0.39289 2.61993 2.63388 3.04361 3.28061 3.44582 3.50630 3.52643 3.72203 3.77898 4.27006 4.34224 4.49880 4.58870 5.16716 5.20669 5.25697 5.30520 5.33763 5.36955 5.45173 5.49349 5.57193 5.66603 5.95498 6.09277 6.16264 6.26645 6.28987 6.39048 6.44231 6.47149 6.62491 6.70835 6.83781 7.04937 7.13236 7.29334 7.72010 7.73436 7.88628 8.37868 8.52419 9.26096 9.90336 10.45877 11.36001 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.013908 B = 0.003521 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2012.734618 B = 7950.586407 C = 9159.401446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.165 3.835 3 H 0.025 0.975 4 C -0.126 4.126 5 C -0.116 4.116 6 C 0.115 3.885 7 H 0.085 0.915 8 N -0.704 5.704 9 C 0.561 3.439 10 O -0.507 6.507 11 C -0.203 4.203 12 C 0.194 3.806 13 F -0.111 7.111 14 C -0.206 4.206 15 C 0.174 3.826 16 F -0.120 7.120 17 C -0.204 4.204 18 C 0.200 3.800 19 F -0.101 7.101 20 C 0.169 3.831 21 N -0.582 5.582 22 C -0.256 4.256 23 H 0.070 0.930 24 C 0.008 3.992 25 N -0.899 5.899 26 Si 0.900 3.100 27 H -0.283 1.283 28 H -0.291 1.291 29 H -0.283 1.283 30 H 0.037 0.963 31 H 0.053 0.947 32 H 0.061 0.939 33 H 0.055 0.945 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.052 0.948 37 H 0.395 0.605 38 H 0.161 0.839 39 H 0.163 0.837 40 H 0.019 0.981 41 H 0.093 0.907 42 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.310 -2.002 10.707 18.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.058 3.942 3 H 0.043 0.957 4 C -0.166 4.166 5 C -0.154 4.154 6 C 0.010 3.990 7 H 0.103 0.897 8 N -0.354 5.354 9 C 0.343 3.657 10 O -0.381 6.381 11 C -0.209 4.209 12 C 0.173 3.827 13 F -0.089 7.089 14 C -0.225 4.225 15 C 0.154 3.846 16 F -0.098 7.098 17 C -0.224 4.224 18 C 0.179 3.821 19 F -0.079 7.079 20 C 0.042 3.958 21 N -0.306 5.306 22 C -0.386 4.386 23 H 0.087 0.913 24 C -0.191 4.191 25 N -0.543 5.543 26 Si 0.730 3.270 27 H -0.209 1.209 28 H -0.217 1.217 29 H -0.209 1.209 30 H 0.056 0.944 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.070 0.930 37 H 0.228 0.772 38 H 0.179 0.821 39 H 0.180 0.820 40 H 0.037 0.963 41 H 0.112 0.888 42 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 14.797 -2.580 10.123 18.113 hybrid contribution 0.017 -0.168 -0.543 0.569 sum 14.815 -2.748 9.579 17.855 Atomic orbital electron populations 1.21800 0.95963 1.01442 1.00169 1.20494 0.93112 0.93542 0.87018 0.95729 1.22051 0.94135 1.01400 0.98991 1.21679 0.97551 0.99631 0.96549 1.22132 0.76920 1.01226 0.98733 0.89731 1.46064 1.09067 1.25695 1.54557 1.17519 0.85581 0.82687 0.79930 1.90899 1.61649 1.41823 1.43758 1.20213 0.96410 1.06374 0.97862 1.16769 0.88479 0.92907 0.84506 1.91615 1.79183 1.82044 1.56101 1.20950 0.92534 1.06990 1.02069 1.16886 0.77449 0.96145 0.94098 1.91581 1.28465 1.93740 1.96001 1.21026 0.93058 1.05704 1.02595 1.16860 0.88932 0.90847 0.85430 1.91707 1.81346 1.75316 1.59555 1.21065 0.83725 0.96946 0.94082 1.43998 1.02538 1.64597 1.19447 1.19081 0.95092 1.38391 0.85991 0.91263 1.25086 0.97776 0.99182 0.97044 1.69988 1.24027 1.43418 1.16825 0.86416 0.79458 0.80480 0.80686 1.20901 1.21660 1.20894 0.94353 0.92772 0.91994 0.92588 0.92014 0.92165 0.92955 0.77211 0.82135 0.81984 0.96334 0.88838 0.93625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 7.95 37.16 0.30 -2.26 16 2 C 0.16 3.36 3.50 -67.60 -0.24 3.13 16 3 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 4 C -0.13 -2.12 5.37 -26.61 -0.14 -2.27 16 5 C -0.12 -1.85 5.35 -26.69 -0.14 -2.00 16 6 C 0.11 2.23 2.60 -67.81 -0.18 2.05 16 7 H 0.08 1.87 7.58 -51.93 -0.39 1.48 16 8 N -0.70 -11.69 5.08 -54.77 -0.28 -11.96 16 9 C 0.56 10.15 6.50 -12.52 -0.08 10.07 16 10 O -0.51 -11.65 16.77 5.28 0.09 -11.56 16 11 C -0.20 -2.82 5.64 -104.85 -0.59 -3.42 16 12 C 0.19 2.21 7.29 -38.98 -0.28 1.93 16 13 F -0.11 -1.38 16.83 2.25 0.04 -1.35 16 14 C -0.21 -1.76 9.99 -39.50 -0.39 -2.15 16 15 C 0.17 1.50 7.30 -39.31 -0.29 1.21 16 16 F -0.12 -1.00 17.26 2.25 0.04 -0.96 16 17 C -0.20 -1.91 9.98 -39.50 -0.39 -2.30 16 18 C 0.20 2.54 7.29 -38.98 -0.28 2.26 16 19 F -0.10 -1.58 16.83 2.25 0.04 -1.54 16 20 C 0.17 4.09 4.86 -3.71 -0.02 4.07 16 21 N -0.58 -14.52 2.99 -164.77 -0.49 -15.01 16 22 C -0.26 -7.03 8.58 -15.06 -0.13 -7.16 16 23 H 0.07 1.85 6.23 -52.49 -0.33 1.52 16 24 C 0.01 0.24 4.94 -17.43 -0.09 0.15 16 25 N -0.90 -26.75 11.23 55.49 0.62 -26.13 16 26 Si 0.90 22.53 29.58 -169.99 -5.03 17.50 16 27 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 28 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 29 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 30 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.05 1.03 7.40 -51.93 -0.38 0.65 16 32 H 0.06 1.26 7.67 -51.93 -0.40 0.86 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.39 5.16 8.59 -40.82 -0.35 4.81 16 38 H 0.16 0.97 8.06 -52.49 -0.42 0.54 16 39 H 0.16 1.16 8.06 -52.48 -0.42 0.74 16 40 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.09 2.69 6.15 -51.93 -0.32 2.37 16 42 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 360.04 15.07 5.43 5.43 Total: -1.00 -32.63 360.04 -7.61 -40.24 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -5.11 Total: 2.02 kcal Atomic # 6 Polarization: 6.27 SS G_CDS: -2.95 Total: 3.32 kcal Atomic # 7 Polarization: -52.95 SS G_CDS: -0.15 Total: -53.10 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: 0.09 Total: -11.56 kcal Atomic # 9 Polarization: -3.96 SS G_CDS: 0.11 Total: -3.84 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.03 Total: 17.50 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.63 -7.61 -40.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071783146.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.679 kcal (2) G-P(sol) polarization free energy of solvation -32.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.84 seconds