Wall clock time and date at job start Wed Apr 1 2020 02:12:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.58417 * 2 1 4 4 C 1.53193 * 109.58540 * 120.28501 * 2 1 3 5 5 C 1.53041 * 109.30926 * 174.42304 * 4 2 1 6 6 C 1.53040 * 109.53872 * 298.63030 * 5 4 2 7 7 H 1.09002 * 109.49778 * 301.42013 * 6 5 4 8 8 N 1.46498 * 109.49599 * 181.35373 * 6 5 4 9 9 C 1.34774 * 119.99520 * 155.00317 * 8 6 5 10 10 O 1.21599 * 120.00529 * 0.02562 * 9 8 6 11 11 C 1.47427 * 119.99582 * 179.97438 * 9 8 6 12 12 C 1.39980 * 120.16200 * 89.72215 * 11 9 8 13 13 F 1.35101 * 120.08482 * 0.02562 * 12 11 9 14 14 C 1.38102 * 119.83211 * 179.76807 * 12 11 9 15 15 C 1.38605 * 120.16141 * 0.51054 * 14 12 11 16 16 F 1.35099 * 119.83423 * 179.72151 * 15 14 12 17 17 C 1.38597 * 120.33085 * 359.73865 * 15 14 12 18 18 C 1.38096 * 120.16637 * 0.02562 * 17 15 14 19 19 F 1.35104 * 120.08436 * 180.02562 * 18 17 15 20 20 C 1.53188 * 109.30982 * 61.36767 * 6 5 4 21 21 N 1.46923 * 109.58311 * 239.57484 * 2 1 3 22 22 C 1.36929 * 120.63553 * 6.57815 * 21 2 1 23 23 H 1.08001 * 120.00141 * 330.16332 * 22 21 2 24 24 C 1.38812 * 120.00149 * 150.16452 * 22 21 2 25 25 N 1.31620 * 119.99919 * 344.51006 * 24 22 21 26 26 Si 1.86802 * 120.00159 * 164.50925 * 24 22 21 27 27 H 1.48507 * 109.47053 * 60.00245 * 26 24 22 28 28 H 1.48500 * 109.47180 * 180.02562 * 26 24 22 29 29 H 1.48501 * 109.47482 * 300.00150 * 26 24 22 30 30 H 1.08995 * 109.46794 * 299.71564 * 1 2 3 31 31 H 1.08996 * 109.47230 * 179.71627 * 1 2 3 32 32 H 1.09006 * 109.47071 * 59.71528 * 1 2 3 33 33 H 1.09000 * 109.49221 * 294.37191 * 4 2 1 34 34 H 1.08994 * 109.49797 * 54.43407 * 4 2 1 35 35 H 1.08996 * 109.46268 * 58.65386 * 5 4 2 36 36 H 1.09001 * 109.45248 * 178.61086 * 5 4 2 37 37 H 0.96997 * 120.00181 * 334.99816 * 8 6 5 38 38 H 1.07995 * 119.92010 * 180.25177 * 14 12 11 39 39 H 1.08006 * 119.91877 * 180.02562 * 17 15 14 40 40 H 1.09004 * 109.58843 * 65.15599 * 20 6 5 41 41 H 1.09002 * 109.58725 * 185.58045 * 20 6 5 42 42 H 0.97003 * 120.00224 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7279 1.2463 5 6 3.5675 -0.8465 1.1712 6 6 3.9570 -1.6658 -0.0614 7 1 3.4983 -2.6529 -0.0019 8 7 5.4142 -1.8062 -0.1148 9 6 5.9673 -2.8500 -0.7636 10 8 5.2568 -3.6750 -1.3051 11 6 7.4338 -2.9909 -0.8178 12 6 8.1095 -3.7014 0.1813 13 9 7.4193 -4.2611 1.1989 14 6 9.4829 -3.8333 0.1212 15 6 10.1931 -3.2553 -0.9193 16 9 11.5371 -3.3837 -0.9685 17 6 9.5315 -2.5460 -1.9093 18 6 8.1580 -2.4097 -1.8652 19 9 7.5147 -1.7184 -2.8314 20 6 3.4651 -0.9486 -1.3225 21 7 2.0225 -0.7010 -1.1936 22 6 1.1537 -1.1162 -2.1671 23 1 0.1399 -1.3834 -1.9079 24 6 1.5759 -1.1937 -3.4872 25 7 2.6864 -0.5931 -3.8593 26 14 0.5680 -2.1504 -4.7356 27 1 -0.7927 -1.5627 -4.8281 28 1 1.2292 -2.0807 -6.0635 29 1 0.4666 -3.5687 -4.3076 30 1 -0.3633 0.5094 0.8925 31 1 -0.3633 -1.0276 -0.0051 32 1 -0.3633 0.5183 -0.8875 33 1 1.7660 -0.1641 2.1370 34 1 1.6025 -1.7234 1.2938 35 1 4.0062 0.1487 1.0991 36 1 3.9378 -1.3422 2.0686 37 1 5.9810 -1.1479 0.3168 38 1 10.0052 -4.3846 0.8890 39 1 10.0916 -2.0987 -2.7172 40 1 3.9904 0.0002 -1.4317 41 1 3.6518 -1.5746 -2.1952 42 1 2.9817 -0.6475 -4.7817 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071783146.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:12:54 Heat of formation + Delta-G solvation = -141.937556 kcal Electronic energy + Delta-G solvation = -30496.960628 eV Core-core repulsion = 25834.318007 eV Total energy + Delta-G solvation = -4662.642621 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.130 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -50.38284 -50.36238 -50.25299 -41.28060 -39.71152 -38.96794 -36.12767 -34.69138 -32.93411 -31.89145 -31.85291 -31.40066 -27.81273 -26.88055 -25.19143 -24.45224 -24.01155 -22.51345 -21.79236 -21.03343 -19.87112 -19.16547 -19.04504 -18.36499 -17.75794 -17.28869 -17.24192 -17.14606 -16.93074 -16.64577 -16.50765 -16.32626 -15.90850 -15.66936 -15.51446 -15.42591 -15.21395 -14.98961 -14.51048 -14.18450 -13.93907 -13.57959 -13.52834 -13.16147 -13.09223 -12.92157 -12.78928 -12.71240 -12.58797 -12.32290 -12.15839 -12.02985 -11.71719 -11.52350 -11.21731 -11.12468 -10.55133 -10.25389 -10.21038 -10.18910 -8.63833 -7.86822 -5.33474 -0.68857 -0.43694 1.22396 1.39462 1.45303 1.49159 1.75400 1.95484 2.21550 2.49117 2.85630 2.92375 3.25099 3.32953 3.47893 3.59009 3.70706 3.90912 4.06344 4.21794 4.33214 4.36014 4.37285 4.39906 4.42833 4.56795 4.69281 4.71281 4.77391 4.86661 4.99763 5.04948 5.15120 5.23587 5.28654 5.34356 5.36128 5.54093 5.58909 5.69277 5.74725 6.31256 6.42434 7.00807 7.15041 7.88079 8.37843 9.18428 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.013908 B = 0.003521 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2012.734618 B = 7950.586407 C = 9159.401446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.153 3.847 3 H 0.023 0.977 4 C -0.118 4.118 5 C -0.107 4.107 6 C 0.128 3.872 7 H 0.054 0.946 8 N -0.692 5.692 9 C 0.558 3.442 10 O -0.568 6.568 11 C -0.223 4.223 12 C 0.191 3.809 13 F -0.119 7.119 14 C -0.177 4.177 15 C 0.191 3.809 16 F -0.109 7.109 17 C -0.184 4.184 18 C 0.179 3.821 19 F -0.128 7.128 20 C 0.182 3.818 21 N -0.603 5.603 22 C -0.254 4.254 23 H 0.075 0.925 24 C -0.051 4.051 25 N -0.933 5.933 26 Si 0.955 3.045 27 H -0.266 1.266 28 H -0.297 1.297 29 H -0.286 1.286 30 H 0.079 0.921 31 H 0.045 0.955 32 H 0.037 0.963 33 H 0.098 0.902 34 H 0.053 0.947 35 H 0.075 0.925 36 H 0.087 0.913 37 H 0.414 0.586 38 H 0.196 0.804 39 H 0.187 0.813 40 H -0.001 1.001 41 H 0.040 0.960 42 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.024 -1.962 13.540 21.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.048 3.952 3 H 0.040 0.960 4 C -0.157 4.157 5 C -0.145 4.145 6 C 0.022 3.978 7 H 0.072 0.928 8 N -0.343 5.343 9 C 0.342 3.658 10 O -0.447 6.447 11 C -0.228 4.228 12 C 0.170 3.830 13 F -0.097 7.097 14 C -0.197 4.197 15 C 0.171 3.829 16 F -0.087 7.087 17 C -0.203 4.203 18 C 0.158 3.842 19 F -0.106 7.106 20 C 0.054 3.946 21 N -0.327 5.327 22 C -0.385 4.385 23 H 0.093 0.907 24 C -0.247 4.247 25 N -0.579 5.579 26 Si 0.784 3.216 27 H -0.191 1.191 28 H -0.223 1.223 29 H -0.213 1.213 30 H 0.098 0.902 31 H 0.064 0.936 32 H 0.056 0.944 33 H 0.117 0.883 34 H 0.071 0.929 35 H 0.094 0.906 36 H 0.106 0.894 37 H 0.251 0.749 38 H 0.213 0.787 39 H 0.204 0.796 40 H 0.017 0.983 41 H 0.058 0.942 42 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 16.524 -2.502 13.016 21.183 hybrid contribution -0.425 -0.165 -1.362 1.436 sum 16.099 -2.667 11.654 20.052 Atomic orbital electron populations 1.21733 0.94692 1.01155 1.01081 1.20822 0.94360 0.93391 0.86646 0.95953 1.21958 0.94321 1.00990 0.98422 1.21657 0.97315 0.99949 0.95563 1.21674 0.78304 0.99523 0.98271 0.92766 1.45912 1.08282 1.25942 1.54124 1.18189 0.87426 0.81796 0.78355 1.90855 1.63747 1.43980 1.46114 1.19944 0.93714 1.09094 1.00040 1.16792 0.89347 0.92922 0.83917 1.91598 1.79618 1.82180 1.56282 1.21198 0.90952 1.05323 1.02192 1.16789 0.77679 0.95051 0.93418 1.91624 1.27731 1.93497 1.95865 1.21181 0.91394 1.04577 1.03145 1.17054 0.90098 0.91962 0.85064 1.91643 1.82117 1.76206 1.60661 1.20715 0.83995 0.95242 0.94603 1.44300 1.02386 1.65543 1.20452 1.19439 0.95586 1.36822 0.86614 0.90726 1.25811 0.99074 1.00776 0.99004 1.70153 1.25833 1.45482 1.16393 0.85519 0.78853 0.78967 0.78285 1.19117 1.22304 1.21276 0.90178 0.93556 0.94364 0.88335 0.92861 0.90647 0.89447 0.74884 0.78655 0.79574 0.98291 0.94170 0.94629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.67 7.95 71.98 0.57 -4.10 16 2 C 0.15 6.11 3.50 44.98 0.16 6.27 16 3 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 4 C -0.12 -3.65 5.37 30.67 0.16 -3.49 16 5 C -0.11 -3.18 5.35 30.62 0.16 -3.01 16 6 C 0.13 5.11 2.60 45.07 0.12 5.23 16 7 H 0.05 2.51 7.58 -2.39 -0.02 2.49 16 8 N -0.69 -23.59 5.08 -445.45 -2.26 -25.86 16 9 C 0.56 21.25 6.50 86.66 0.56 21.81 16 10 O -0.57 -28.11 16.77 -4.03 -0.07 -28.17 16 11 C -0.22 -6.25 5.64 -20.01 -0.11 -6.37 16 12 C 0.19 4.05 7.29 22.66 0.17 4.22 16 13 F -0.12 -2.80 16.83 44.97 0.76 -2.04 16 14 C -0.18 -2.40 9.99 22.32 0.22 -2.17 16 15 C 0.19 2.59 7.30 22.44 0.16 2.75 16 16 F -0.11 -1.34 17.26 44.97 0.78 -0.57 16 17 C -0.18 -3.04 9.98 22.32 0.22 -2.81 16 18 C 0.18 4.56 7.29 22.66 0.17 4.72 16 19 F -0.13 -4.24 16.83 44.97 0.76 -3.48 16 20 C 0.18 9.30 4.86 86.36 0.42 9.72 16 21 N -0.60 -30.99 2.99 -675.21 -2.02 -33.01 16 22 C -0.25 -14.46 8.58 84.03 0.72 -13.74 16 23 H 0.08 4.08 6.23 -2.91 -0.02 4.06 16 24 C -0.05 -3.05 4.94 84.86 0.42 -2.63 16 25 N -0.93 -58.87 11.23 21.65 0.24 -58.63 16 26 Si 0.96 48.23 29.58 68.60 2.03 50.26 16 27 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 28 H -0.30 -15.13 7.11 99.48 0.71 -14.42 16 29 H -0.29 -14.44 7.11 99.48 0.71 -13.74 16 30 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 31 H 0.05 1.72 7.40 -2.39 -0.02 1.70 16 32 H 0.04 1.53 7.67 -2.38 -0.02 1.51 16 33 H 0.10 2.30 8.14 -2.39 -0.02 2.29 16 34 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.41 10.67 8.59 -92.71 -0.80 9.87 16 38 H 0.20 1.33 8.06 -2.91 -0.02 1.31 16 39 H 0.19 2.15 8.06 -2.91 -0.02 2.13 16 40 H 0.00 -0.05 8.14 -2.38 -0.02 -0.07 16 41 H 0.04 2.48 6.15 -2.39 -0.01 2.47 16 42 H 0.24 15.21 8.31 -92.71 -0.77 14.44 16 Total: -1.00 -78.61 360.04 4.63 -73.98 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: 0.28 Total: 11.13 kcal Atomic # 6 Polarization: 12.26 SS G_CDS: 4.13 Total: 16.39 kcal Atomic # 7 Polarization: -113.46 SS G_CDS: -4.03 Total: -117.50 kcal Atomic # 8 Polarization: -28.11 SS G_CDS: -0.07 Total: -28.17 kcal Atomic # 9 Polarization: -8.38 SS G_CDS: 2.29 Total: -6.09 kcal Atomic # 14 Polarization: 48.23 SS G_CDS: 2.03 Total: 50.26 kcal Total: -78.61 4.63 -73.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071783146.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.955 kcal (2) G-P(sol) polarization free energy of solvation -78.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds