Wall clock time and date at job start Wed Apr 1 2020 03:05:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.46875 * 2 1 4 4 C 1.52999 * 109.47524 * 120.00190 * 2 1 3 5 5 C 1.52999 * 109.47222 * 185.00123 * 4 2 1 6 6 N 1.46497 * 109.46733 * 179.97438 * 5 4 2 7 7 C 1.34777 * 119.99874 * 179.97438 * 6 5 4 8 8 O 1.21281 * 119.99965 * 0.02562 * 7 6 5 9 9 C 1.50705 * 120.00386 * 180.02562 * 7 6 5 10 10 S 1.80998 * 109.47109 * 180.02562 * 9 7 6 11 11 C 1.76201 * 99.99682 * 180.02562 * 10 9 7 12 12 H 1.08004 * 120.00136 * 359.97438 * 11 10 9 13 13 C 1.38801 * 120.00038 * 180.02562 * 11 10 9 14 14 N 1.31625 * 119.99863 * 179.97438 * 13 11 10 15 15 Si 1.86795 * 119.99827 * 359.97438 * 13 11 10 16 16 H 1.48504 * 109.47270 * 90.00477 * 15 13 11 17 17 H 1.48501 * 109.47181 * 210.00313 * 15 13 11 18 18 H 1.48502 * 109.47417 * 330.00522 * 15 13 11 19 19 N 1.46499 * 109.47022 * 240.00416 * 2 1 3 20 20 C 1.34784 * 119.99971 * 84.99732 * 19 2 1 21 21 O 1.21538 * 119.99953 * 359.72729 * 20 19 2 22 22 C 1.47996 * 119.99695 * 179.97438 * 20 19 2 23 23 N 1.34190 * 126.70414 * 0.03128 * 22 20 19 24 24 N 1.28982 * 107.25650 * 179.97438 * 23 22 20 25 25 N 1.28718 * 108.98383 * 0.02562 * 24 23 22 26 26 C 1.46505 * 125.31503 * 180.02562 * 25 24 23 27 27 N 1.28869 * 109.36395 * 359.72353 * 25 24 23 28 28 H 1.09005 * 109.47314 * 299.99734 * 1 2 3 29 29 H 1.09001 * 109.47831 * 59.99682 * 1 2 3 30 30 H 1.08996 * 109.47227 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46897 * 305.00274 * 4 2 1 32 32 H 1.08995 * 109.47110 * 64.99598 * 4 2 1 33 33 H 1.09001 * 109.46785 * 299.99862 * 5 4 2 34 34 H 1.09002 * 109.47226 * 59.99951 * 5 4 2 35 35 H 0.96998 * 120.00391 * 0.02562 * 6 5 4 36 36 H 1.09002 * 109.46731 * 300.00191 * 9 7 6 37 37 H 1.08990 * 109.46831 * 59.99716 * 9 7 6 38 38 H 0.97005 * 119.99914 * 179.97438 * 14 13 11 39 39 H 0.96999 * 119.99984 * 264.99579 * 19 2 1 40 40 H 1.09000 * 109.47219 * 89.97345 * 26 25 24 41 41 H 1.09002 * 109.46753 * 209.97040 * 26 25 24 42 42 H 1.09001 * 109.47097 * 329.97172 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5649 -0.6132 1.3136 6 7 4.0531 -1.3034 2.5100 7 6 5.3740 -1.3395 2.7752 8 8 6.1584 -0.8002 2.0236 9 6 5.8765 -2.0499 4.0057 10 16 7.6803 -1.9219 4.0819 11 6 7.9874 -2.8119 5.5713 12 1 7.1637 -3.2348 6.1274 13 6 9.2879 -2.9687 6.0305 14 7 9.5172 -3.6332 7.1434 15 14 10.7124 -2.2368 5.0692 16 1 10.9744 -0.8555 5.5472 17 1 11.9256 -3.0690 5.2714 18 1 10.3698 -2.2040 3.6246 19 7 2.0183 -0.6905 -1.1962 20 6 2.1469 -0.0181 -2.3572 21 8 1.8531 1.1600 -2.4129 22 6 2.6408 -0.7156 -3.5655 23 7 2.9965 -2.0062 -3.6574 24 7 3.3666 -2.2152 -4.8752 25 7 3.2579 -1.1184 -5.5400 26 6 3.5835 -0.9522 -6.9587 27 7 2.8121 -0.1909 -4.7643 28 1 -0.3634 0.5138 0.8900 29 1 -0.3635 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 1.6054 -0.2618 2.1369 32 1 1.7517 -1.7715 1.2055 33 1 3.9994 -1.0727 0.4258 34 1 3.8532 0.4370 1.3572 35 1 3.4258 -1.7350 3.1110 36 1 5.4421 -1.5901 4.8934 37 1 5.5878 -3.1000 3.9622 38 1 10.4261 -3.7431 7.4641 39 1 2.2490 -1.6317 -1.1527 40 1 2.6989 -1.1590 -7.5611 41 1 3.9142 0.0708 -7.1381 42 1 4.3794 -1.6447 -7.2324 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075679091.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:18 Heat of formation + Delta-G solvation = 53.450604 kcal Electronic energy + Delta-G solvation = -26010.776007 eV Core-core repulsion = 21962.659152 eV Total energy + Delta-G solvation = -4048.116855 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.126 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.88340 -40.29440 -39.24661 -37.00016 -35.74909 -34.56677 -33.65984 -32.43322 -32.15080 -30.26616 -29.25646 -28.23818 -25.86690 -25.60623 -23.81219 -23.36579 -21.98127 -21.15700 -20.42247 -18.97039 -18.10240 -17.87066 -17.31535 -16.91176 -16.32679 -16.07941 -15.51857 -15.37904 -14.94922 -14.90075 -14.56114 -14.18613 -14.13011 -13.88930 -13.82938 -13.80277 -13.35912 -12.97326 -12.78910 -12.64605 -12.46935 -12.28245 -11.75240 -11.66066 -11.61831 -11.58053 -11.35685 -11.25259 -11.00004 -10.88161 -10.75988 -10.59595 -9.85296 -9.66424 -9.50085 -9.01775 -8.96126 -8.49015 -6.90956 -6.28263 -3.99846 0.50812 0.98628 1.24385 2.35518 2.66159 2.76591 2.98615 3.29509 3.34593 3.49440 3.51664 3.61263 3.64736 4.24006 4.32244 4.34133 4.39387 4.44932 4.56461 4.66807 4.74250 4.76820 5.01235 5.02381 5.10785 5.10869 5.24834 5.29158 5.34608 5.45099 5.51506 5.65112 5.78273 5.78573 5.85539 5.97894 6.01916 6.50772 6.87520 7.52441 7.60190 7.72144 7.94802 8.42196 8.49775 9.18028 10.80904 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.013422 B = 0.002024 C = 0.001819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2085.610184 B =13829.265272 C =15385.439946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.147 3.853 3 H 0.099 0.901 4 C -0.140 4.140 5 C 0.119 3.881 6 N -0.737 5.737 7 C 0.529 3.471 8 O -0.519 6.519 9 C -0.124 4.124 10 S -0.143 6.143 11 C -0.521 4.521 12 H 0.088 0.912 13 C 0.095 3.905 14 N -0.880 5.880 15 Si 0.857 3.143 16 H -0.267 1.267 17 H -0.274 1.274 18 H -0.235 1.235 19 N -0.702 5.702 20 C 0.622 3.378 21 O -0.505 6.505 22 C 0.127 3.873 23 N -0.251 5.251 24 N -0.051 5.051 25 N -0.133 5.133 26 C 0.091 3.909 27 N -0.246 5.246 28 H 0.072 0.928 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.093 0.907 32 H 0.080 0.920 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.400 0.600 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.271 0.729 39 H 0.412 0.588 40 H 0.107 0.893 41 H 0.115 0.885 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.097 4.639 -24.794 32.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.043 3.957 3 H 0.117 0.883 4 C -0.179 4.179 5 C -0.006 4.006 6 N -0.392 5.392 7 C 0.315 3.685 8 O -0.393 6.393 9 C -0.274 4.274 10 S 0.084 5.916 11 C -0.669 4.669 12 H 0.106 0.894 13 C -0.113 4.113 14 N -0.517 5.517 15 Si 0.682 3.318 16 H -0.192 1.192 17 H -0.200 1.200 18 H -0.159 1.159 19 N -0.355 5.355 20 C 0.401 3.599 21 O -0.376 6.376 22 C -0.157 4.157 23 N -0.127 5.127 24 N -0.045 5.045 25 N -0.046 5.046 26 C -0.049 4.049 27 N -0.101 5.101 28 H 0.091 0.909 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.111 0.889 32 H 0.099 0.901 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.234 0.766 36 H 0.115 0.885 37 H 0.116 0.884 38 H 0.080 0.920 39 H 0.249 0.751 40 H 0.125 0.875 41 H 0.134 0.866 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -19.648 5.893 -26.344 33.388 hybrid contribution -0.457 -0.814 1.113 1.453 sum -20.104 5.079 -25.230 32.658 Atomic orbital electron populations 1.22188 0.94212 1.02691 1.03156 1.21041 0.94549 0.97827 0.82256 0.88309 1.22143 0.95451 1.02283 0.97979 1.21297 0.92671 0.98097 0.88500 1.45934 1.07721 1.58496 1.27062 1.20295 0.81652 0.79756 0.86766 1.90710 1.54998 1.44500 1.49096 1.23276 1.03007 1.03277 0.97881 1.84813 0.98186 1.73820 1.34822 1.22318 0.97283 1.39500 1.07762 0.89372 1.24715 0.98311 0.93905 0.94417 1.69938 1.21700 1.39486 1.20554 0.86733 0.82144 0.79879 0.83087 1.19216 1.19954 1.15925 1.45824 1.66292 1.14833 1.08596 1.16038 0.78002 0.85282 0.80566 1.90870 1.48703 1.14285 1.83759 1.25262 1.05780 0.90087 0.94580 1.76147 1.13680 1.13897 1.08929 1.78971 1.16052 1.10507 0.98994 1.50286 1.37856 1.03476 1.13016 1.22607 1.04730 1.07051 0.70474 1.75084 1.15087 1.18235 1.01660 0.90895 0.91742 0.91997 0.88900 0.90102 0.91481 0.91379 0.76623 0.88484 0.88431 0.91954 0.75138 0.87498 0.86605 0.86353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.96 9.48 37.16 0.35 -0.61 16 2 C 0.15 1.03 2.57 -67.93 -0.17 0.86 16 3 H 0.10 0.83 7.58 -51.92 -0.39 0.44 16 4 C -0.14 -0.85 4.87 -26.73 -0.13 -0.98 16 5 C 0.12 1.22 5.56 -4.04 -0.02 1.20 16 6 N -0.74 -8.77 5.56 -60.29 -0.33 -9.11 16 7 C 0.53 9.31 7.85 -10.98 -0.09 9.22 16 8 O -0.52 -11.33 15.86 5.56 0.09 -11.24 16 9 C -0.12 -2.37 6.16 36.01 0.22 -2.15 16 10 S -0.14 -3.64 18.55 -107.50 -1.99 -5.63 16 11 C -0.52 -15.04 10.04 30.94 0.31 -14.73 16 12 H 0.09 2.64 8.03 -52.48 -0.42 2.22 16 13 C 0.10 2.79 5.50 -17.43 -0.10 2.70 16 14 N -0.88 -26.60 13.97 55.49 0.78 -25.82 16 15 Si 0.86 21.93 27.74 -169.99 -4.71 17.21 16 16 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 17 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 18 H -0.24 -6.03 6.74 56.52 0.38 -5.64 16 19 N -0.70 -5.80 4.53 -54.70 -0.25 -6.04 16 20 C 0.62 6.91 7.80 -12.26 -0.10 6.81 16 21 O -0.51 -6.94 16.76 5.33 0.09 -6.85 16 22 C 0.13 1.43 8.14 -156.24 -1.27 0.16 16 23 N -0.25 -2.79 12.26 32.10 0.39 -2.40 16 24 N -0.05 -0.51 13.23 60.35 0.80 0.29 16 25 N -0.13 -1.05 4.39 -16.64 -0.07 -1.13 16 26 C 0.09 0.15 11.62 59.85 0.70 0.85 16 27 N -0.25 -2.63 12.17 32.11 0.39 -2.24 16 28 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.78 7.75 -51.93 -0.40 0.38 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.40 3.45 8.47 -40.82 -0.35 3.10 16 36 H 0.10 1.71 8.14 -51.91 -0.42 1.29 16 37 H 0.10 1.72 8.14 -51.92 -0.42 1.30 16 38 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 39 H 0.41 2.94 8.35 -40.82 -0.34 2.60 16 40 H 0.11 -0.05 8.14 -51.93 -0.42 -0.47 16 41 H 0.12 0.04 8.14 -51.93 -0.42 -0.39 16 42 H 0.12 -0.03 8.14 -51.93 -0.42 -0.46 16 LS Contribution 383.61 15.07 5.78 5.78 Total: -1.00 -39.64 383.61 -5.05 -44.70 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: -5.71 Total: -0.85 kcal Atomic # 6 Polarization: 3.64 SS G_CDS: -0.30 Total: 3.34 kcal Atomic # 7 Polarization: -48.15 SS G_CDS: 1.70 Total: -46.45 kcal Atomic # 8 Polarization: -18.27 SS G_CDS: 0.18 Total: -18.09 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.71 Total: 17.21 kcal Atomic # 16 Polarization: -3.64 SS G_CDS: -1.99 Total: -5.63 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -39.64 -5.05 -44.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075679091.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.147 kcal (2) G-P(sol) polarization free energy of solvation -39.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds