Wall clock time and date at job start Wed Apr 1 2020 03:05:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.46796 * 2 1 4 4 C 1.53001 * 109.46508 * 119.99286 * 2 1 3 5 5 C 1.53006 * 109.46654 * 184.99930 * 4 2 1 6 6 N 1.46505 * 109.46975 * 180.02562 * 5 4 2 7 7 C 1.34773 * 119.99859 * 180.02562 * 6 5 4 8 8 O 1.21285 * 119.99944 * 359.97438 * 7 6 5 9 9 C 1.50698 * 120.00119 * 179.97438 * 7 6 5 10 10 N 1.46496 * 109.47503 * 179.97438 * 9 7 6 11 11 N 1.28884 * 125.44750 * 89.99989 * 10 9 7 12 12 C 1.31041 * 107.91319 * 180.02562 * 11 10 9 13 13 N 1.33317 * 106.90551 * 359.97438 * 12 11 10 14 14 N 1.28782 * 125.45025 * 269.69775 * 10 9 7 15 15 N 1.46497 * 109.47335 * 239.99136 * 2 1 3 16 16 C 1.34777 * 119.99525 * 84.99977 * 15 2 1 17 17 O 1.21283 * 120.00463 * 0.02562 * 16 15 2 18 18 C 1.50700 * 119.99675 * 179.72583 * 16 15 2 19 19 S 1.80997 * 109.47151 * 180.27780 * 18 16 15 20 20 C 1.76196 * 100.00314 * 179.97438 * 19 18 16 21 21 H 1.08005 * 120.00018 * 0.02562 * 20 19 18 22 22 C 1.38799 * 120.00626 * 179.97438 * 20 19 18 23 23 N 1.31633 * 119.99674 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00584 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47157 * 59.99781 * 24 22 20 26 26 H 1.48496 * 109.47271 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.46802 * 300.00045 * 24 22 20 28 28 H 1.08998 * 109.46811 * 60.00625 * 1 2 3 29 29 H 1.08994 * 109.47201 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47273 * 300.00977 * 1 2 3 31 31 H 1.09000 * 109.47404 * 304.99977 * 4 2 1 32 32 H 1.09001 * 109.47466 * 65.00446 * 4 2 1 33 33 H 1.09000 * 109.47254 * 300.00139 * 5 4 2 34 34 H 1.09001 * 109.46763 * 60.00085 * 5 4 2 35 35 H 0.97001 * 119.99746 * 359.97438 * 6 5 4 36 36 H 1.09000 * 109.46994 * 299.99970 * 9 7 6 37 37 H 1.09006 * 109.46984 * 59.99729 * 9 7 6 38 38 H 1.08009 * 126.54666 * 180.02562 * 12 11 10 39 39 H 0.97000 * 120.00580 * 265.00723 * 15 2 1 40 40 H 1.09009 * 109.47352 * 300.27556 * 18 16 15 41 41 H 1.08998 * 109.47585 * 60.27844 * 18 16 15 42 42 H 0.97003 * 120.00297 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 3.5648 -0.6132 1.3138 6 7 4.0531 -1.3042 2.5098 7 6 5.3739 -1.3396 2.7755 8 8 6.1583 -0.7998 2.0242 9 6 5.8763 -2.0499 4.0060 10 7 7.3363 -1.9467 4.0677 11 7 7.9951 -1.0034 4.6485 12 6 9.2728 -1.2499 4.4941 13 7 9.3676 -2.3819 3.7963 14 7 8.1668 -2.7869 3.5551 15 7 2.0185 -0.6908 -1.1960 16 6 2.1472 -0.0185 -2.3570 17 8 1.8591 1.1584 -2.4116 18 6 2.6554 -0.7275 -3.5859 19 16 2.7226 0.4369 -4.9699 20 6 3.3326 -0.6266 -6.2353 21 1 3.5410 -1.6633 -6.0155 22 6 3.5443 -0.1325 -7.5150 23 7 3.2888 1.1306 -7.7834 24 14 4.1903 -1.2601 -8.8567 25 1 3.2408 -2.3839 -9.0587 26 1 4.3279 -0.4955 -10.1223 27 1 5.5153 -1.7977 -8.4560 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5140 0.8898 31 1 1.6053 -0.2615 2.1370 32 1 1.7516 -1.7714 1.2059 33 1 3.9995 -1.0728 0.4262 34 1 3.8531 0.4371 1.3574 35 1 3.4257 -1.7356 3.1109 36 1 5.4414 -1.5905 4.8937 37 1 5.5881 -3.1003 3.9623 38 1 10.0925 -0.6509 4.8627 39 1 2.2491 -1.6319 -1.1524 40 1 3.6539 -1.1197 -3.3923 41 1 1.9842 -1.5494 -3.8349 42 1 3.4371 1.4761 -8.6776 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076649629.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:11 Heat of formation + Delta-G solvation = 55.622017 kcal Electronic energy + Delta-G solvation = -25972.416612 eV Core-core repulsion = 21924.393916 eV Total energy + Delta-G solvation = -4048.022696 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.126 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.68826 -40.41692 -39.46911 -36.85906 -35.39552 -34.95030 -33.44427 -32.42288 -32.01835 -30.52931 -28.91513 -28.45522 -25.48050 -24.49686 -24.31516 -23.13609 -21.80886 -21.15592 -20.40138 -18.64976 -18.41537 -17.83115 -16.80501 -16.75731 -16.45995 -16.25783 -16.04632 -15.48533 -14.97586 -14.80218 -14.71813 -14.38583 -14.20574 -13.97238 -13.74147 -13.30024 -13.21614 -12.99583 -12.66867 -12.35700 -12.23840 -12.00463 -11.91843 -11.66474 -11.55327 -11.33328 -11.19490 -11.04139 -11.03070 -11.02543 -10.76054 -10.39848 -9.82223 -9.73027 -9.42623 -9.06291 -8.97841 -8.24395 -6.49753 -6.20935 -3.91670 0.77369 1.30895 1.83461 1.92045 2.45852 3.00134 3.05758 3.24531 3.28170 3.31362 3.60014 3.67800 3.80124 3.99281 4.08067 4.21205 4.28866 4.45296 4.52248 4.59727 5.09609 5.11213 5.14191 5.21072 5.23320 5.33536 5.35363 5.43161 5.52012 5.54970 5.63149 5.64030 5.76136 5.87434 5.92648 6.09846 6.13453 6.58705 6.71352 7.44929 7.59798 7.64503 7.98910 8.35606 8.57339 9.24304 10.86431 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.010379 B = 0.002086 C = 0.001797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2697.145252 B =13421.308624 C =15574.326216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.146 3.854 3 H 0.092 0.908 4 C -0.137 4.137 5 C 0.116 3.884 6 N -0.720 5.720 7 C 0.500 3.500 8 O -0.511 6.511 9 C 0.111 3.889 10 N -0.130 5.130 11 N -0.303 5.303 12 C 0.148 3.852 13 N -0.282 5.282 14 N -0.048 5.048 15 N -0.737 5.737 16 C 0.534 3.466 17 O -0.515 6.515 18 C -0.155 4.155 19 S -0.060 6.060 20 C -0.536 4.536 21 H 0.072 0.928 22 C 0.073 3.927 23 N -0.868 5.868 24 Si 0.919 3.081 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 H 0.067 0.933 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.404 0.596 36 H 0.147 0.853 37 H 0.148 0.852 38 H 0.237 0.763 39 H 0.397 0.603 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.929 -9.006 30.712 32.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.041 3.959 3 H 0.110 0.890 4 C -0.175 4.175 5 C -0.007 4.007 6 N -0.374 5.374 7 C 0.282 3.718 8 O -0.385 6.385 9 C -0.013 4.013 10 N -0.041 5.041 11 N -0.152 5.152 12 C -0.155 4.155 13 N -0.153 5.153 14 N -0.042 5.042 15 N -0.392 5.392 16 C 0.320 3.680 17 O -0.389 6.389 18 C -0.305 4.305 19 S 0.167 5.833 20 C -0.684 4.684 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.199 1.199 28 H 0.086 0.914 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.105 0.895 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.239 0.761 36 H 0.164 0.836 37 H 0.166 0.834 38 H 0.253 0.747 39 H 0.231 0.769 40 H 0.108 0.892 41 H 0.107 0.893 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.160 -6.956 29.618 30.446 hybrid contribution 0.772 -2.262 -0.249 2.403 sum -0.388 -9.218 29.368 30.783 Atomic orbital electron populations 1.22173 0.94885 1.02147 1.02918 1.20772 0.94265 0.97755 0.83142 0.89026 1.22115 0.94040 1.02287 0.99079 1.21533 0.93972 0.98162 0.86991 1.45808 1.06449 1.57316 1.27788 1.20250 0.83377 0.81406 0.86771 1.90893 1.55034 1.44078 1.48453 1.21964 0.72408 1.06097 1.00878 1.49468 1.09181 1.12978 1.32487 1.74707 1.06955 1.14320 1.19198 1.27386 0.93415 0.95444 0.99284 1.75912 1.12392 1.11970 1.15035 1.79023 0.94251 1.16354 1.14607 1.46135 1.69620 1.13877 1.09571 1.20310 0.76702 0.87210 0.83748 1.90703 1.48205 1.15699 1.84324 1.23541 1.03630 1.04908 0.98449 1.85380 1.86031 1.12901 0.98984 1.22822 1.50976 0.98119 0.96513 0.90993 1.24993 0.95088 0.95553 0.97951 1.70008 1.45424 1.13195 1.21672 0.86222 0.79357 0.79990 0.79929 1.19949 1.20799 1.19911 0.91361 0.92490 0.91843 0.89547 0.90403 0.90415 0.90642 0.76149 0.83568 0.83406 0.74651 0.76917 0.89246 0.89251 0.92124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.45 9.48 37.16 0.35 -1.10 16 2 C 0.15 1.37 2.57 -67.93 -0.17 1.20 16 3 H 0.09 1.08 7.58 -51.93 -0.39 0.69 16 4 C -0.14 -0.69 4.87 -26.73 -0.13 -0.82 16 5 C 0.12 0.85 5.56 -4.04 -0.02 0.82 16 6 N -0.72 -3.34 5.56 -60.29 -0.33 -3.67 16 7 C 0.50 3.86 7.90 -10.99 -0.09 3.77 16 8 O -0.51 -7.18 16.43 5.55 0.09 -7.09 16 9 C 0.11 0.46 7.08 -5.20 -0.04 0.43 16 10 N -0.13 -1.19 3.49 -11.72 -0.04 -1.23 16 11 N -0.30 -2.94 12.13 29.34 0.36 -2.59 16 12 C 0.15 1.32 13.26 -91.58 -1.21 0.10 16 13 N -0.28 -3.28 12.50 29.34 0.37 -2.91 16 14 N -0.05 -0.55 13.25 60.35 0.80 0.24 16 15 N -0.74 -8.68 4.53 -53.80 -0.24 -8.93 16 16 C 0.53 9.52 7.81 -10.98 -0.09 9.43 16 17 O -0.52 -11.29 15.52 5.55 0.09 -11.20 16 18 C -0.15 -3.08 6.16 36.01 0.22 -2.86 16 19 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 20 C -0.54 -15.39 9.50 30.94 0.29 -15.09 16 21 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 22 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 23 N -0.87 -26.37 13.22 55.49 0.73 -25.64 16 24 Si 0.92 21.64 29.55 -169.99 -5.02 16.62 16 25 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 26 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 27 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 28 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.09 0.28 8.14 -51.93 -0.42 -0.15 16 32 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 33 H 0.08 0.74 7.75 -51.93 -0.40 0.34 16 34 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.40 0.15 8.47 -40.82 -0.35 -0.20 16 36 H 0.15 0.07 8.14 -51.93 -0.42 -0.36 16 37 H 0.15 0.08 8.14 -51.93 -0.42 -0.34 16 38 H 0.24 0.99 8.06 -52.48 -0.42 0.56 16 39 H 0.40 3.58 8.60 -40.82 -0.35 3.22 16 40 H 0.09 1.68 8.14 -51.91 -0.42 1.26 16 41 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 42 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 385.77 15.07 5.81 5.81 Total: -1.00 -42.54 385.77 -6.27 -48.81 By element: Atomic # 1 Polarization: 3.38 SS G_CDS: -5.69 Total: -2.31 kcal Atomic # 6 Polarization: -1.12 SS G_CDS: -0.98 Total: -2.09 kcal Atomic # 7 Polarization: -46.35 SS G_CDS: 1.64 Total: -44.72 kcal Atomic # 8 Polarization: -18.47 SS G_CDS: 0.18 Total: -18.29 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -42.54 -6.27 -48.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076649629.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.437 kcal (2) G-P(sol) polarization free energy of solvation -42.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds