Wall clock time and date at job start Wed Apr 1 2020 02:07:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 F 1.39904 * 109.47096 * 2 1 4 4 F 1.39894 * 109.47289 * 239.99989 * 2 1 3 5 5 C 1.50695 * 109.47125 * 119.99540 * 2 1 3 6 6 O 1.21287 * 120.00499 * 335.00148 * 5 2 1 7 7 N 1.34785 * 119.99997 * 155.00085 * 5 2 1 8 8 C 1.48146 * 127.83657 * 180.02562 * 7 5 2 9 9 C 1.54389 * 104.71947 * 219.64948 * 8 7 5 10 10 H 1.09003 * 110.34006 * 95.05014 * 9 8 7 11 11 C 1.50694 * 110.34232 * 217.20514 * 9 8 7 12 12 C 1.38269 * 119.98624 * 238.54493 * 11 9 8 13 13 C 1.38222 * 120.05015 * 180.02562 * 12 11 9 14 14 C 1.38223 * 120.02653 * 359.97438 * 13 12 11 15 15 C 1.38440 * 119.97456 * 0.02562 * 14 13 12 16 16 F 1.35094 * 120.02497 * 180.02562 * 15 14 13 17 17 C 1.38172 * 119.98931 * 58.27751 * 11 9 8 18 18 C 1.54289 * 104.96102 * 336.07694 * 9 8 7 19 19 H 1.08999 * 110.34364 * 241.02435 * 18 9 8 20 20 N 1.46498 * 110.34572 * 118.86791 * 18 9 8 21 21 C 1.36932 * 120.00297 * 154.99650 * 20 18 9 22 22 H 1.08005 * 119.99727 * 0.02562 * 21 20 18 23 23 C 1.38811 * 120.00247 * 179.97438 * 21 20 18 24 24 N 1.31618 * 120.00032 * 180.02562 * 23 21 20 25 25 Si 1.86799 * 120.00008 * 0.02562 * 23 21 20 26 26 H 1.48501 * 109.47188 * 89.99518 * 25 23 21 27 27 H 1.48500 * 109.47306 * 209.99533 * 25 23 21 28 28 H 1.48500 * 109.47093 * 329.99498 * 25 23 21 29 29 C 1.48427 * 127.97962 * 0.09805 * 7 5 2 30 30 H 1.08998 * 109.46954 * 300.00285 * 1 2 3 31 31 H 1.08999 * 109.47153 * 60.00392 * 1 2 3 32 32 H 1.09002 * 109.46832 * 180.02562 * 1 2 3 33 33 H 1.09002 * 110.40776 * 100.80694 * 8 7 5 34 34 H 1.09002 * 110.40863 * 338.49103 * 8 7 5 35 35 H 1.08000 * 119.97597 * 0.02562 * 12 11 9 36 36 H 1.08005 * 119.99067 * 180.02562 * 13 12 11 37 37 H 1.08004 * 120.01125 * 179.97438 * 14 13 12 38 38 H 1.08001 * 120.01134 * 359.97438 * 17 11 9 39 39 H 0.97007 * 119.99847 * 335.00673 * 20 18 9 40 40 H 0.97001 * 119.99916 * 180.02562 * 24 23 21 41 41 H 1.09004 * 110.39413 * 21.57126 * 29 7 5 42 42 H 1.09006 * 110.49084 * 259.21157 * 29 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9964 1.3190 0.0000 4 9 1.9964 -0.6595 -1.1422 5 6 2.0324 -0.7103 1.2305 6 8 1.3370 -0.7704 2.2224 7 7 3.2544 -1.2789 1.2287 8 6 3.9160 -2.0145 2.3314 9 6 5.3919 -1.5651 2.2727 10 1 5.5648 -0.7410 2.9649 11 6 6.3044 -2.7200 2.5960 12 6 7.1834 -2.6295 3.6594 13 6 8.0213 -3.6878 3.9568 14 6 7.9810 -4.8381 3.1915 15 6 7.1013 -4.9298 2.1264 16 9 7.0607 -6.0538 1.3781 17 6 6.2585 -3.8710 1.8329 18 6 5.6093 -1.1007 0.8175 19 1 6.3774 -1.7068 0.3371 20 7 5.9847 0.3150 0.7853 21 6 6.7033 0.8090 -0.2705 22 1 6.9929 0.1549 -1.0797 23 6 7.0585 2.1505 -0.3012 24 7 7.7487 2.6254 -1.3163 25 14 6.5570 3.2818 1.0980 26 1 7.6161 3.2812 2.1390 27 1 6.3744 4.6609 0.5785 28 1 5.2817 2.8027 1.6891 29 6 4.2455 -1.3106 0.1243 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 3.8395 -3.0898 2.1706 34 1 3.4735 -1.7418 3.2895 35 1 7.2153 -1.7313 4.2582 36 1 8.7073 -3.6163 4.7879 37 1 8.6362 -5.6647 3.4238 38 1 5.5684 -3.9433 1.0052 39 1 5.7244 0.9024 1.5121 40 1 7.9973 3.5628 -1.3376 41 1 4.0510 -0.5051 -0.5838 42 1 4.2211 -2.2753 -0.3827 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001079167657.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:07:30 Heat of formation + Delta-G solvation = -124.217801 kcal Electronic energy + Delta-G solvation = -30854.454599 eV Core-core repulsion = 26192.580364 eV Total energy + Delta-G solvation = -4661.874235 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.130 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.10277 -48.91823 -47.08241 -40.33154 -39.11484 -37.52807 -34.21843 -32.86471 -31.59130 -31.26947 -30.59619 -28.97789 -27.95054 -25.67943 -23.66100 -23.33168 -22.62103 -21.43245 -20.13840 -19.99640 -18.19181 -17.70415 -17.61357 -17.31345 -16.68868 -16.31229 -16.13600 -15.74014 -15.63815 -15.50979 -14.78794 -14.34949 -14.21871 -14.04374 -13.85033 -13.62846 -13.41982 -13.37582 -13.14199 -13.06513 -12.80466 -12.70637 -12.59528 -12.41873 -12.16876 -12.09786 -11.89156 -11.79817 -11.41435 -11.09573 -10.91192 -10.88662 -10.76124 -10.22629 -9.96317 -9.69205 -9.26174 -8.98785 -8.81655 -8.62963 -7.40701 -5.86858 -3.25062 1.09954 1.14197 2.15179 2.53006 3.32141 3.36141 3.41053 3.50277 3.68867 3.87839 4.15582 4.35346 4.48966 4.51251 4.53556 4.62303 4.81666 4.90361 4.92979 5.10580 5.24030 5.27285 5.29753 5.31168 5.43808 5.45893 5.53231 5.66666 5.69779 5.74623 5.82387 5.92402 5.99766 6.02810 6.03534 6.22383 6.26996 6.48475 6.53595 6.83662 7.33394 7.73986 7.85262 8.30941 9.06585 9.79333 9.96057 11.30508 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.008137 B = 0.005116 C = 0.003642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3440.349156 B = 5471.526846 C = 7687.275441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.286 3.714 3 F -0.175 7.175 4 F -0.185 7.185 5 C 0.507 3.493 6 O -0.521 6.521 7 N -0.598 5.598 8 C 0.114 3.886 9 C -0.080 4.080 10 H 0.098 0.902 11 C -0.030 4.030 12 C -0.120 4.120 13 C -0.088 4.088 14 C -0.161 4.161 15 C 0.099 3.901 16 F -0.142 7.142 17 C -0.149 4.149 18 C 0.182 3.818 19 H 0.085 0.915 20 N -0.735 5.735 21 C -0.254 4.254 22 H 0.094 0.906 23 C 0.015 3.985 24 N -0.926 5.926 25 Si 0.879 3.121 26 H -0.283 1.283 27 H -0.289 1.289 28 H -0.276 1.276 29 C 0.063 3.937 30 H 0.099 0.901 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.130 0.870 36 H 0.131 0.869 37 H 0.132 0.868 38 H 0.136 0.864 39 H 0.363 0.637 40 H 0.261 0.739 41 H 0.101 0.899 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.954 -13.139 8.060 17.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.246 3.754 3 F -0.156 7.156 4 F -0.166 7.166 5 C 0.290 3.710 6 O -0.397 6.397 7 N -0.330 5.330 8 C -0.008 4.008 9 C -0.100 4.100 10 H 0.116 0.884 11 C -0.031 4.031 12 C -0.138 4.138 13 C -0.106 4.106 14 C -0.180 4.180 15 C 0.080 3.920 16 F -0.121 7.121 17 C -0.167 4.167 18 C 0.070 3.930 19 H 0.103 0.897 20 N -0.377 5.377 21 C -0.383 4.383 22 H 0.111 0.889 23 C -0.182 4.182 24 N -0.573 5.573 25 Si 0.709 3.291 26 H -0.210 1.210 27 H -0.215 1.215 28 H -0.202 1.202 29 C -0.062 4.062 30 H 0.118 0.882 31 H 0.109 0.891 32 H 0.110 0.890 33 H 0.098 0.902 34 H 0.104 0.896 35 H 0.148 0.852 36 H 0.149 0.851 37 H 0.149 0.851 38 H 0.154 0.846 39 H 0.196 0.804 40 H 0.071 0.929 41 H 0.119 0.881 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -8.241 -13.083 8.286 17.542 hybrid contribution -0.071 0.864 0.531 1.017 sum -8.311 -12.218 8.817 17.208 Atomic orbital electron populations 1.22624 0.89143 1.05972 1.06022 1.21210 0.95218 0.76667 0.82283 1.93146 1.90449 1.35534 1.96486 1.93060 1.90263 1.80635 1.52679 1.20360 0.81227 0.80117 0.89263 1.90738 1.55782 1.59682 1.33528 1.49018 1.14518 1.52288 1.17165 1.22485 0.90825 0.96143 0.91341 1.21577 0.92185 0.95849 1.00412 0.88395 1.19457 0.96028 0.93433 0.94153 1.21165 0.95984 0.99154 0.97487 1.20972 0.98297 0.92344 0.99018 1.21104 1.00502 1.00141 0.96263 1.17640 0.98630 0.83476 0.92225 1.91491 1.95705 1.49598 1.75285 1.20987 1.00921 0.92840 1.02000 1.21214 0.93438 0.87757 0.90575 0.89677 1.42829 1.65545 1.04112 1.25182 1.19026 1.26413 0.94007 0.98893 0.88863 1.24637 0.99589 0.96680 0.97313 1.69690 1.42445 1.14441 1.30686 0.86643 0.78397 0.81283 0.82809 1.20966 1.21523 1.20189 1.23983 0.89346 1.02795 0.90085 0.88247 0.89136 0.89044 0.90210 0.89561 0.85216 0.85089 0.85052 0.84617 0.80351 0.92870 0.88097 0.90890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.98 8.92 37.16 0.33 -1.65 16 2 C 0.29 4.29 2.11 -27.88 -0.06 4.24 16 3 F -0.18 -3.12 17.05 2.25 0.04 -3.08 16 4 F -0.19 -2.82 14.43 2.25 0.03 -2.78 16 5 C 0.51 8.20 7.34 -10.98 -0.08 8.12 16 6 O -0.52 -9.09 16.36 5.55 0.09 -9.00 16 7 N -0.60 -9.19 3.33 -169.04 -0.56 -9.76 16 8 C 0.11 1.49 6.50 -2.41 -0.02 1.48 16 9 C -0.08 -1.10 3.05 -90.37 -0.28 -1.38 16 10 H 0.10 1.40 7.46 -51.93 -0.39 1.01 16 11 C -0.03 -0.37 4.75 -104.64 -0.50 -0.87 16 12 C -0.12 -1.36 9.68 -39.58 -0.38 -1.74 16 13 C -0.09 -0.88 10.04 -39.59 -0.40 -1.28 16 14 C -0.16 -1.70 10.03 -39.51 -0.40 -2.09 16 15 C 0.10 1.20 7.30 -39.42 -0.29 0.91 16 16 F -0.14 -1.80 17.27 2.25 0.04 -1.76 16 17 C -0.15 -1.79 8.05 -39.52 -0.32 -2.11 16 18 C 0.18 3.10 3.11 -66.51 -0.21 2.89 16 19 H 0.09 1.48 7.23 -51.93 -0.38 1.10 16 20 N -0.74 -16.06 4.92 -52.05 -0.26 -16.32 16 21 C -0.25 -6.73 10.44 -15.06 -0.16 -6.88 16 22 H 0.09 2.63 8.06 -52.48 -0.42 2.21 16 23 C 0.01 0.41 5.50 -17.43 -0.10 0.32 16 24 N -0.93 -28.19 13.97 55.49 0.78 -27.42 16 25 Si 0.88 21.66 27.74 -169.99 -4.71 16.95 16 26 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 27 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 28 H -0.28 -6.55 6.52 56.52 0.37 -6.18 16 29 C 0.06 1.00 5.78 -2.23 -0.01 0.99 16 30 H 0.10 1.08 7.87 -51.93 -0.41 0.67 16 31 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.08 0.90 6.97 -51.93 -0.36 0.54 16 34 H 0.09 1.12 7.88 -51.93 -0.41 0.71 16 35 H 0.13 1.33 7.97 -52.49 -0.42 0.91 16 36 H 0.13 0.98 8.06 -52.48 -0.42 0.55 16 37 H 0.13 1.12 8.06 -52.48 -0.42 0.69 16 38 H 0.14 1.52 7.79 -52.49 -0.41 1.11 16 39 H 0.36 8.05 5.42 -40.82 -0.22 7.83 16 40 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 41 H 0.10 1.89 6.37 -51.93 -0.33 1.56 16 42 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 LS Contribution 360.25 15.07 5.43 5.43 Total: -1.00 -31.75 360.25 -7.01 -38.75 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -5.03 Total: 8.04 kcal Atomic # 6 Polarization: 3.80 SS G_CDS: -2.85 Total: 0.95 kcal Atomic # 7 Polarization: -53.45 SS G_CDS: -0.04 Total: -53.49 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: 0.09 Total: -9.00 kcal Atomic # 9 Polarization: -7.73 SS G_CDS: 0.11 Total: -7.62 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.71 Total: 16.95 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.75 -7.01 -38.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079167657.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.464 kcal (2) G-P(sol) polarization free energy of solvation -31.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds