Wall clock time and date at job start Wed Apr 1 2020 02:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 110.63983 * 2 1 4 4 C 1.54337 * 110.99773 * 236.92188 * 2 1 3 5 5 N 1.47020 * 107.26210 * 219.60002 * 4 2 1 6 6 C 1.36945 * 125.64525 * 178.85184 * 5 4 2 7 7 H 1.07997 * 119.99756 * 359.71717 * 6 5 4 8 8 C 1.38805 * 119.99878 * 179.71622 * 6 5 4 9 9 N 1.31624 * 120.00257 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99929 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.47187 * 179.97438 * 10 8 6 12 12 H 1.48494 * 109.47141 * 300.00154 * 10 8 6 13 13 H 1.48498 * 109.47018 * 60.00200 * 10 8 6 14 14 C 1.47420 * 108.70626 * 358.58837 * 5 4 2 15 15 C 1.54914 * 104.83159 * 24.35323 * 14 5 4 16 16 H 1.09002 * 111.00120 * 81.06703 * 15 14 5 17 17 N 1.46492 * 111.00284 * 204.91262 * 15 14 5 18 18 C 1.34779 * 120.00542 * 273.54715 * 17 15 14 19 19 O 1.21565 * 119.99899 * 0.02562 * 18 17 15 20 20 C 1.47696 * 119.99878 * 180.02562 * 18 17 15 21 21 C 1.39650 * 120.16906 * 0.02562 * 20 18 17 22 22 C 1.37857 * 119.87786 * 179.97438 * 21 20 18 23 23 C 1.38452 * 120.22115 * 0.02562 * 22 21 20 24 24 C 1.38209 * 120.33708 * 0.02562 * 23 22 21 25 25 C 1.50705 * 119.94227 * 179.97438 * 24 23 22 26 26 F 1.39901 * 109.47010 * 120.00048 * 25 24 23 27 27 F 1.39894 * 109.47128 * 240.00064 * 25 24 23 28 28 C 1.38325 * 120.11643 * 359.69940 * 24 23 22 29 29 F 1.35095 * 120.11113 * 180.29898 * 28 24 23 30 30 H 1.09000 * 109.47012 * 296.85820 * 1 2 3 31 31 H 1.09000 * 109.47235 * 56.85241 * 1 2 3 32 32 H 1.08999 * 109.47449 * 176.86112 * 1 2 3 33 33 H 1.09001 * 109.98748 * 100.12718 * 4 2 1 34 34 H 1.09001 * 109.78230 * 338.96187 * 4 2 1 35 35 H 0.97001 * 119.99885 * 179.97438 * 9 8 6 36 36 H 1.08999 * 110.36700 * 143.19620 * 14 5 4 37 37 H 1.08998 * 110.36896 * 265.40859 * 14 5 4 38 38 H 0.97002 * 119.99551 * 93.55061 * 17 15 14 39 39 H 1.08005 * 120.06339 * 359.95148 * 21 20 18 40 40 H 1.08009 * 119.89118 * 180.02562 * 22 21 20 41 41 H 1.08002 * 119.83807 * 179.97438 * 23 22 21 42 42 H 1.08999 * 109.46516 * 0.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0831 -0.7864 -1.2074 5 7 3.2493 -1.5470 -0.7354 6 6 4.0124 -2.3919 -1.4965 7 1 3.7712 -2.5469 -2.5378 8 6 5.0957 -3.0490 -0.9298 9 7 5.3894 -2.8604 0.3394 10 14 6.1362 -4.2020 -1.9678 11 1 7.2238 -4.7734 -1.1338 12 1 5.2849 -5.2999 -2.4922 13 1 6.7273 -3.4487 -3.1028 14 6 3.4652 -1.2447 0.6912 15 6 2.0789 -0.7934 1.2151 16 1 1.4469 -1.6529 1.4383 17 7 2.2176 0.0726 2.3885 18 6 2.3114 -0.4695 3.6189 19 8 2.2815 -1.6771 3.7549 20 6 2.4506 0.4038 4.8019 21 6 2.4848 1.7915 4.6497 22 6 2.6144 2.6010 5.7581 23 6 2.7112 2.0426 7.0213 24 6 2.6794 0.6703 7.1822 25 6 2.7861 0.0720 8.5613 26 9 1.6378 -0.6794 8.8337 27 9 3.9114 -0.7567 8.6244 28 6 2.5441 -0.1548 6.0803 29 9 2.5070 -1.4960 6.2383 30 1 -0.3633 0.4643 0.9168 31 1 -0.3634 0.5619 -0.8604 32 1 -0.3634 -1.0261 -0.0563 33 1 2.3847 -0.0961 -1.9951 34 1 1.3215 -1.4701 -1.5824 35 1 6.1463 -3.3199 0.7355 36 1 3.7993 -2.1364 1.2216 37 1 4.1944 -0.4423 0.8029 38 1 2.2418 1.0362 2.2799 39 1 2.4103 2.2299 3.6654 40 1 2.6405 3.6743 5.6406 41 1 2.8130 2.6825 7.8853 42 1 2.8805 0.8704 9.2973 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001079712705.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:46:49 Heat of formation + Delta-G solvation = -123.154917 kcal Electronic energy + Delta-G solvation = -30056.243025 eV Core-core repulsion = 25394.414880 eV Total energy + Delta-G solvation = -4661.828145 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.130 amu Computer time = 26.02 seconds Orbital eigenvalues (eV) -49.44657 -48.74099 -47.20796 -40.13447 -38.77085 -37.39847 -34.07055 -33.01628 -32.26436 -31.08141 -30.36530 -27.87830 -26.44878 -25.67151 -24.60813 -23.32480 -22.26559 -20.90373 -20.13417 -19.67029 -18.31256 -17.83014 -17.48543 -17.37929 -16.92319 -16.40409 -16.26659 -15.79488 -15.60804 -15.11783 -14.89135 -14.30126 -14.27379 -14.07419 -13.72933 -13.60616 -13.56269 -13.13994 -13.01361 -12.90176 -12.66975 -12.50666 -12.38384 -12.28306 -12.22887 -11.73444 -11.32817 -11.22945 -11.08451 -10.75802 -10.64949 -10.41045 -10.00079 -9.78600 -9.74906 -9.64813 -9.61672 -9.13151 -8.62832 -8.50743 -6.82432 -5.60453 -3.04874 0.33370 0.62117 2.65046 3.16105 3.34652 3.43844 3.47673 3.50074 3.54242 3.69980 3.85198 4.15696 4.40751 4.49436 4.52712 4.62336 4.70116 4.86615 5.03821 5.16443 5.28093 5.40257 5.46459 5.55032 5.58495 5.64147 5.73366 5.77745 5.92582 6.00833 6.12470 6.21100 6.29060 6.35770 6.45532 6.64823 6.74082 6.91867 7.43784 7.62968 7.76422 7.93284 8.39604 8.47942 9.23662 9.85152 10.47808 11.42240 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.013760 B = 0.003043 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.401843 B = 9200.596307 C =10438.921799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.111 4.111 3 H 0.073 0.927 4 C 0.142 3.858 5 N -0.603 5.603 6 C -0.230 4.230 7 H 0.078 0.922 8 C -0.008 4.008 9 N -0.917 5.917 10 Si 0.915 3.085 11 H -0.290 1.290 12 H -0.284 1.284 13 H -0.286 1.286 14 C 0.148 3.852 15 C 0.121 3.879 16 H 0.092 0.908 17 N -0.706 5.706 18 C 0.551 3.449 19 O -0.510 6.510 20 C -0.165 4.165 21 C -0.038 4.038 22 C -0.142 4.142 23 C -0.037 4.037 24 C -0.224 4.224 25 C 0.319 3.681 26 F -0.195 7.195 27 F -0.194 7.194 28 C 0.198 3.802 29 F -0.099 7.099 30 H 0.050 0.950 31 H 0.053 0.947 32 H 0.057 0.943 33 H 0.024 0.976 34 H 0.028 0.972 35 H 0.254 0.746 36 H 0.113 0.887 37 H 0.013 0.987 38 H 0.392 0.608 39 H 0.142 0.858 40 H 0.143 0.857 41 H 0.144 0.856 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.597 16.714 14.974 24.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.130 4.130 3 H 0.091 0.909 4 C 0.015 3.985 5 N -0.329 5.329 6 C -0.358 4.358 7 H 0.096 0.904 8 C -0.204 4.204 9 N -0.565 5.565 10 Si 0.745 3.255 11 H -0.215 1.215 12 H -0.211 1.211 13 H -0.212 1.212 14 C 0.022 3.978 15 C 0.016 3.984 16 H 0.110 0.890 17 N -0.357 5.357 18 C 0.336 3.664 19 O -0.386 6.386 20 C -0.169 4.169 21 C -0.057 4.057 22 C -0.160 4.160 23 C -0.056 4.056 24 C -0.226 4.226 25 C 0.265 3.735 26 F -0.177 7.177 27 F -0.175 7.175 28 C 0.177 3.823 29 F -0.077 7.077 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.042 0.958 34 H 0.046 0.954 35 H 0.065 0.935 36 H 0.131 0.869 37 H 0.031 0.969 38 H 0.227 0.773 39 H 0.160 0.840 40 H 0.161 0.839 41 H 0.161 0.839 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -8.431 15.552 15.079 23.245 hybrid contribution 0.666 -0.304 -0.607 0.952 sum -7.764 15.248 14.472 22.410 Atomic orbital electron populations 1.21747 0.94870 1.02026 1.00891 1.22426 0.95245 0.99141 0.96217 0.90854 1.21334 0.90340 0.93201 0.93598 1.44380 1.30967 1.50481 1.07074 1.19007 1.06249 1.17599 0.92911 0.90371 1.24826 0.98745 1.00491 0.96367 1.69789 1.29958 1.45966 1.10764 0.86151 0.79797 0.80637 0.78874 1.21541 1.21071 1.21230 1.22237 0.89129 1.01294 0.85096 1.22746 1.01317 0.92251 0.82112 0.89007 1.45738 1.74124 1.09890 1.05929 1.17804 0.78058 0.87719 0.82774 1.90902 1.48206 1.13820 1.85647 1.20286 1.08662 0.94910 0.93076 1.21422 0.92895 0.91212 1.00123 1.21114 1.02511 1.00841 0.91574 1.20980 0.93805 0.92028 0.98753 1.20497 1.12605 0.95403 0.94118 1.20260 0.72170 0.86672 0.94384 1.93049 1.50696 1.79187 1.94723 1.93063 1.52055 1.75061 1.97285 1.17461 0.94486 0.78123 0.92198 1.91672 1.91889 1.28112 1.95990 0.93104 0.92790 0.92382 0.95838 0.95431 0.93537 0.86890 0.96907 0.77347 0.83990 0.83892 0.83859 0.85749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 9.17 37.16 0.34 -1.48 16 2 C -0.11 -1.81 3.15 -88.78 -0.28 -2.09 16 3 H 0.07 1.07 8.00 -51.93 -0.42 0.65 16 4 C 0.14 2.90 6.85 -3.06 -0.02 2.88 16 5 N -0.60 -15.67 3.39 -170.07 -0.58 -16.24 16 6 C -0.23 -6.52 10.27 -15.06 -0.15 -6.67 16 7 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 8 C -0.01 -0.24 5.49 -17.43 -0.10 -0.33 16 9 N -0.92 -27.92 10.09 55.49 0.56 -27.36 16 10 Si 0.92 22.64 29.55 -169.99 -5.02 17.62 16 11 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 12 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 13 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 14 C 0.15 3.72 5.58 -2.53 -0.01 3.71 16 15 C 0.12 2.34 2.76 -65.79 -0.18 2.16 16 16 H 0.09 1.98 7.64 -51.93 -0.40 1.59 16 17 N -0.71 -11.18 5.18 -52.72 -0.27 -11.46 16 18 C 0.55 9.83 7.77 -12.40 -0.10 9.73 16 19 O -0.51 -11.69 15.09 5.31 0.08 -11.61 16 20 C -0.17 -2.28 5.88 -104.91 -0.62 -2.90 16 21 C -0.04 -0.34 9.54 -39.19 -0.37 -0.71 16 22 C -0.14 -0.92 10.03 -39.64 -0.40 -1.32 16 23 C -0.04 -0.25 9.66 -39.51 -0.38 -0.63 16 24 C -0.22 -2.34 5.37 -104.60 -0.56 -2.90 16 25 C 0.32 3.03 5.16 36.01 0.19 3.22 16 26 F -0.20 -2.33 17.06 2.25 0.04 -2.30 16 27 F -0.19 -2.42 17.09 2.25 0.04 -2.39 16 28 C 0.20 2.89 7.11 -38.96 -0.28 2.61 16 29 F -0.10 -1.81 14.74 2.25 0.03 -1.78 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.82 8.08 -51.93 -0.42 0.40 16 33 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.03 0.56 7.78 -51.93 -0.40 0.16 16 35 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 36 H 0.11 3.37 5.87 -51.93 -0.31 3.07 16 37 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.39 4.61 6.55 -40.82 -0.27 4.34 16 39 H 0.14 0.91 6.41 -52.48 -0.34 0.57 16 40 H 0.14 0.45 8.06 -52.48 -0.42 0.03 16 41 H 0.14 0.37 7.94 -52.49 -0.42 -0.04 16 42 H 0.13 0.54 7.87 -51.93 -0.41 0.13 16 LS Contribution 360.19 15.07 5.43 5.43 Total: -1.00 -36.85 360.19 -7.65 -44.50 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -5.03 Total: 0.31 kcal Atomic # 6 Polarization: 8.19 SS G_CDS: -2.93 Total: 5.27 kcal Atomic # 7 Polarization: -54.77 SS G_CDS: -0.29 Total: -55.06 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: 0.08 Total: -11.61 kcal Atomic # 9 Polarization: -6.57 SS G_CDS: 0.11 Total: -6.46 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -36.85 -7.65 -44.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079712705.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.652 kcal (2) G-P(sol) polarization free energy of solvation -36.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 26.02 seconds