Wall clock time and date at job start Wed Apr 1 2020 02:47:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 110.77889 * 2 1 4 4 C 1.54319 * 110.71847 * 236.75128 * 2 1 3 5 5 N 1.47028 * 107.26947 * 219.44394 * 4 2 1 6 6 C 1.36932 * 125.64498 * 178.99120 * 5 4 2 7 7 H 1.08005 * 120.00391 * 0.02562 * 6 5 4 8 8 C 1.38819 * 119.99874 * 180.02562 * 6 5 4 9 9 N 1.31617 * 119.99797 * 359.97438 * 8 6 5 10 10 Si 1.86795 * 119.99934 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47616 * 89.99956 * 10 8 6 12 12 H 1.48505 * 109.47178 * 209.99675 * 10 8 6 13 13 H 1.48495 * 109.47487 * 329.99308 * 10 8 6 14 14 C 1.47419 * 108.70371 * 358.94679 * 5 4 2 15 15 C 1.54912 * 104.83391 * 24.12534 * 14 5 4 16 16 H 1.08995 * 111.03512 * 81.08074 * 15 14 5 17 17 N 1.46498 * 111.00363 * 204.91815 * 15 14 5 18 18 C 1.34777 * 119.99828 * 266.91713 * 17 15 14 19 19 O 1.21283 * 120.00222 * 0.28168 * 18 17 15 20 20 C 1.50703 * 120.00290 * 180.27728 * 18 17 15 21 21 C 1.50701 * 109.47355 * 180.02562 * 20 18 17 22 22 C 1.38241 * 119.97282 * 99.99977 * 21 20 18 23 23 C 1.38366 * 120.02140 * 179.97438 * 22 21 20 24 24 F 1.35095 * 120.01121 * 180.02562 * 23 22 21 25 25 C 1.38685 * 119.97795 * 359.97438 * 23 22 21 26 26 F 1.35101 * 120.02192 * 180.02562 * 25 23 22 27 27 C 1.38350 * 119.95838 * 0.02562 * 25 23 22 28 28 C 1.38414 * 119.97725 * 279.72654 * 21 20 18 29 29 F 1.35108 * 119.99348 * 359.97438 * 28 21 20 30 30 H 1.09003 * 109.47263 * 296.77022 * 1 2 3 31 31 H 1.09000 * 109.46908 * 56.76956 * 1 2 3 32 32 H 1.09003 * 109.47343 * 176.76659 * 1 2 3 33 33 H 1.08999 * 109.88838 * 338.86726 * 4 2 1 34 34 H 1.09003 * 109.87868 * 100.03224 * 4 2 1 35 35 H 0.97002 * 120.00075 * 180.02562 * 9 8 6 36 36 H 1.09002 * 110.36625 * 265.29189 * 14 5 4 37 37 H 1.08996 * 110.36984 * 142.96546 * 14 5 4 38 38 H 0.97001 * 120.00384 * 87.20160 * 17 15 14 39 39 H 1.08998 * 109.46954 * 300.00581 * 20 18 17 40 40 H 1.09002 * 109.46946 * 59.99717 * 20 18 17 41 41 H 1.07995 * 119.99253 * 0.02598 * 22 21 20 42 42 H 1.08002 * 120.01441 * 180.02562 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0760 -0.7914 -1.2071 5 7 3.2445 -1.5509 -0.7387 6 6 4.0044 -2.3970 -1.5014 7 1 3.7618 -2.5503 -2.5426 8 6 5.0866 -3.0578 -0.9363 9 7 5.3825 -2.8706 0.3324 10 14 6.1236 -4.2114 -1.9770 11 1 7.2336 -3.4498 -2.6040 12 1 6.6837 -5.2849 -1.1172 13 1 5.2781 -4.8169 -3.0369 14 6 3.4632 -1.2498 0.6878 15 6 2.0789 -0.7954 1.2140 16 1 1.4447 -1.6530 1.4381 17 7 2.2214 0.0698 2.3875 18 6 2.1816 -0.4617 3.6254 19 8 2.0328 -1.6570 3.7677 20 6 2.3219 0.4290 4.8329 21 6 2.2444 -0.4061 6.0850 22 6 3.4029 -0.7660 6.7479 23 6 3.3329 -1.5323 7.8978 24 9 4.4651 -1.8835 8.5458 25 6 2.1000 -1.9388 8.3857 26 9 2.0306 -2.6866 9.5087 27 6 0.9411 -1.5782 7.7215 28 6 1.0131 -0.8074 6.5735 29 9 -0.1187 -0.4500 5.9281 30 1 -0.3634 0.4629 0.9175 31 1 -0.3633 0.5632 -0.8596 32 1 -0.3634 -1.0260 -0.0580 33 1 1.3130 -1.4760 -1.5774 34 1 2.3741 -0.1026 -1.9976 35 1 6.1389 -3.3320 0.7272 36 1 4.1930 -0.4478 0.7986 37 1 3.7959 -2.1425 1.2173 38 1 2.3403 1.0258 2.2739 39 1 3.2835 0.9410 4.7969 40 1 1.5182 1.1654 4.8365 41 1 4.3628 -0.4483 6.3686 42 1 -0.0195 -1.8939 8.1009 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001080511371.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:47:30 Heat of formation + Delta-G solvation = -140.915145 kcal Electronic energy + Delta-G solvation = -29710.087460 eV Core-core repulsion = 25047.489174 eV Total energy + Delta-G solvation = -4662.598286 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.130 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -50.63946 -50.11570 -49.71412 -41.11538 -39.88782 -38.92337 -35.60838 -34.34905 -33.78145 -32.14663 -31.54118 -29.90361 -28.31190 -27.28564 -25.31858 -24.57572 -23.53174 -22.19695 -21.56926 -20.91657 -19.44039 -19.04477 -18.91600 -18.46364 -18.15091 -17.50284 -17.36113 -16.90480 -16.74541 -16.50978 -16.13689 -16.10931 -15.66719 -15.61809 -15.52593 -15.28022 -14.94937 -14.45472 -14.39566 -14.24447 -14.05169 -13.91315 -13.43892 -13.35400 -13.05540 -12.86473 -12.83136 -12.73849 -12.57943 -12.49255 -12.20164 -12.00359 -11.83331 -11.63114 -11.39514 -10.95071 -10.76296 -10.22849 -9.92931 -9.68040 -8.89208 -7.77524 -5.23491 -0.42132 -0.27271 1.44659 1.47096 1.55761 1.71412 1.88306 2.35298 2.50788 2.52548 2.86759 3.24239 3.26026 3.32072 3.39373 3.69439 3.72788 3.83802 4.02676 4.06899 4.12668 4.28844 4.38015 4.44087 4.56226 4.62335 4.64701 4.67525 4.68596 4.80915 4.90541 4.94485 5.05506 5.10557 5.24819 5.33057 5.46138 5.51520 5.52923 5.68996 5.82988 6.29417 6.67185 7.08201 7.38481 7.77461 8.39439 9.22713 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.012052 B = 0.003028 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2322.681035 B = 9245.630108 C =10978.030889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.093 4.093 3 H 0.101 0.899 4 C 0.131 3.869 5 N -0.628 5.628 6 C -0.240 4.240 7 H 0.084 0.916 8 C -0.068 4.068 9 N -0.947 5.947 10 Si 0.979 3.021 11 H -0.283 1.283 12 H -0.297 1.297 13 H -0.268 1.268 14 C 0.156 3.844 15 C 0.137 3.863 16 H 0.063 0.937 17 N -0.699 5.699 18 C 0.507 3.493 19 O -0.584 6.584 20 C -0.094 4.094 21 C -0.083 4.083 22 C -0.083 4.083 23 C 0.047 3.953 24 F -0.132 7.132 25 C 0.087 3.913 26 F -0.127 7.127 27 C -0.158 4.158 28 C 0.130 3.870 29 F -0.125 7.125 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.041 0.959 33 H 0.027 0.973 34 H 0.033 0.967 35 H 0.244 0.756 36 H -0.004 1.004 37 H 0.060 0.940 38 H 0.418 0.582 39 H 0.148 0.852 40 H 0.145 0.855 41 H 0.177 0.823 42 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.338 13.168 14.109 21.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.112 4.112 3 H 0.119 0.881 4 C 0.006 3.994 5 N -0.354 5.354 6 C -0.369 4.369 7 H 0.102 0.898 8 C -0.261 4.261 9 N -0.597 5.597 10 Si 0.807 3.193 11 H -0.210 1.210 12 H -0.224 1.224 13 H -0.193 1.193 14 C 0.030 3.970 15 C 0.031 3.969 16 H 0.082 0.918 17 N -0.350 5.350 18 C 0.295 3.705 19 O -0.463 6.463 20 C -0.133 4.133 21 C -0.085 4.085 22 C -0.102 4.102 23 C 0.027 3.973 24 F -0.111 7.111 25 C 0.067 3.933 26 F -0.106 7.106 27 C -0.178 4.178 28 C 0.110 3.890 29 F -0.103 7.103 30 H 0.090 0.910 31 H 0.095 0.905 32 H 0.060 0.940 33 H 0.045 0.955 34 H 0.051 0.949 35 H 0.054 0.946 36 H 0.014 0.986 37 H 0.078 0.922 38 H 0.255 0.745 39 H 0.166 0.834 40 H 0.163 0.837 41 H 0.194 0.806 42 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -10.297 12.173 14.238 21.376 hybrid contribution 1.010 -0.933 -0.317 1.411 sum -9.286 11.239 13.921 20.159 Atomic orbital electron populations 1.21691 0.92204 1.01728 1.03073 1.22372 0.97259 0.99159 0.92409 0.88055 1.21618 0.88589 0.93290 0.95878 1.44703 1.31979 1.50895 1.07851 1.19479 1.06544 1.17395 0.93495 0.89837 1.25666 1.00362 1.02474 0.97552 1.70102 1.30094 1.47097 1.12408 0.85062 0.78647 0.78056 0.77490 1.20977 1.22380 1.19284 1.21897 0.92154 0.98323 0.84647 1.22110 0.97025 0.92992 0.84816 0.91840 1.45619 1.73317 1.11661 1.04451 1.21113 0.75350 0.88762 0.85292 1.90754 1.50564 1.18171 1.86842 1.20731 1.09507 0.96967 0.86065 1.19423 0.90993 1.00686 0.97356 1.21058 1.00668 0.96191 0.92236 1.17756 0.81150 1.02967 0.95420 1.91528 1.48536 1.90526 1.80496 1.17340 0.92876 0.96803 0.86307 1.91539 1.97038 1.73747 1.48248 1.21052 0.99717 1.01051 0.95948 1.17192 0.82288 0.97683 0.91794 1.91537 1.48767 1.89611 1.80432 0.91042 0.90456 0.93965 0.95526 0.94928 0.94603 0.98645 0.92240 0.74496 0.83377 0.83719 0.80598 0.80319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.01 9.16 71.98 0.66 -2.35 16 2 C -0.09 -2.77 3.20 -9.60 -0.03 -2.80 16 3 H 0.10 2.52 8.00 -2.39 -0.02 2.50 16 4 C 0.13 5.20 6.84 86.73 0.59 5.79 16 5 N -0.63 -32.57 3.39 -691.98 -2.35 -34.91 16 6 C -0.24 -13.67 10.27 84.04 0.86 -12.80 16 7 H 0.08 4.52 7.83 -2.91 -0.02 4.50 16 8 C -0.07 -3.95 5.49 84.86 0.47 -3.48 16 9 N -0.95 -58.38 10.09 21.65 0.22 -58.16 16 10 Si 0.98 46.64 29.55 68.60 2.03 48.67 16 11 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 12 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 13 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 14 C 0.16 7.78 5.58 86.86 0.48 8.26 16 15 C 0.14 5.07 2.87 46.39 0.13 5.21 16 16 H 0.06 2.75 7.44 -2.39 -0.02 2.73 16 17 N -0.70 -18.96 5.20 -435.96 -2.27 -21.22 16 18 C 0.51 14.57 7.82 87.66 0.69 15.26 16 19 O -0.58 -23.68 15.59 -3.04 -0.05 -23.73 16 20 C -0.09 -1.54 5.56 29.10 0.16 -1.38 16 21 C -0.08 -1.68 4.43 -19.82 -0.09 -1.77 16 22 C -0.08 -1.67 9.64 22.30 0.22 -1.45 16 23 C 0.05 1.08 7.31 22.41 0.16 1.24 16 24 F -0.13 -3.29 17.18 44.97 0.77 -2.52 16 25 C 0.09 1.93 7.31 22.40 0.16 2.09 16 26 F -0.13 -2.96 17.18 44.97 0.77 -2.19 16 27 C -0.16 -3.10 10.00 22.35 0.22 -2.88 16 28 C 0.13 2.77 7.13 22.37 0.16 2.93 16 29 F -0.13 -2.75 16.65 44.97 0.75 -2.00 16 30 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.04 1.11 8.06 -2.39 -0.02 1.09 16 33 H 0.03 1.06 7.76 -2.39 -0.02 1.04 16 34 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.24 14.73 8.31 -92.71 -0.77 13.96 16 36 H 0.00 -0.23 8.14 -2.39 -0.02 -0.24 16 37 H 0.06 3.60 5.87 -2.39 -0.01 3.59 16 38 H 0.42 7.57 8.57 -92.71 -0.79 6.77 16 39 H 0.15 1.47 8.00 -2.39 -0.02 1.46 16 40 H 0.15 1.44 7.94 -2.39 -0.02 1.42 16 41 H 0.18 2.78 8.03 -2.91 -0.02 2.75 16 42 H 0.18 2.60 8.06 -2.91 -0.02 2.58 16 Total: -1.00 -78.43 365.21 5.01 -73.41 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: 0.28 Total: 10.79 kcal Atomic # 6 Polarization: 7.01 SS G_CDS: 4.85 Total: 11.86 kcal Atomic # 7 Polarization: -109.90 SS G_CDS: -4.40 Total: -114.30 kcal Atomic # 8 Polarization: -23.68 SS G_CDS: -0.05 Total: -23.73 kcal Atomic # 9 Polarization: -9.00 SS G_CDS: 2.29 Total: -6.70 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 2.03 Total: 48.67 kcal Total: -78.43 5.01 -73.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080511371.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.501 kcal (2) G-P(sol) polarization free energy of solvation -78.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds