Wall clock time and date at job start Wed Apr 1 2020 00:46:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47469 * 2 1 4 4 H 1.09002 * 109.99521 * 56.17958 * 3 2 1 5 5 C 1.54325 * 109.88142 * 295.08107 * 3 2 1 6 6 H 1.08994 * 110.72327 * 336.92928 * 5 3 2 7 7 N 1.46500 * 110.71682 * 100.02759 * 5 3 2 8 8 C 1.34776 * 119.99619 * 202.55259 * 7 5 3 9 9 O 1.21592 * 120.00116 * 0.02562 * 8 7 5 10 10 C 1.47577 * 120.00158 * 179.97438 * 8 7 5 11 11 C 1.39738 * 120.13173 * 359.73094 * 10 8 7 12 12 C 1.37753 * 119.94578 * 179.76407 * 11 10 8 13 13 C 1.38718 * 120.21273 * 0.51021 * 12 11 10 14 14 F 1.35095 * 119.86760 * 179.72025 * 13 12 11 15 15 C 1.38664 * 120.26210 * 359.74259 * 13 12 11 16 16 F 1.35108 * 119.96597 * 179.97438 * 15 13 12 17 17 C 1.38379 * 120.06019 * 0.02562 * 15 13 12 18 18 F 1.35099 * 120.11108 * 180.02562 * 17 15 13 19 19 C 1.55158 * 103.09863 * 218.47672 * 5 3 2 20 20 C 1.54907 * 101.58448 * 35.41318 * 19 5 3 21 21 N 1.47319 * 110.06696 * 177.34873 * 3 2 1 22 22 C 1.36943 * 125.61456 * 298.25079 * 21 3 2 23 23 H 1.08003 * 119.99701 * 347.98036 * 22 21 3 24 24 C 1.38808 * 120.00376 * 167.98733 * 22 21 3 25 25 N 1.31622 * 119.99430 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 120.00326 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.47125 * 0.02562 * 26 24 22 28 28 H 1.48500 * 109.46794 * 119.99817 * 26 24 22 29 29 H 1.48496 * 109.47292 * 239.99769 * 26 24 22 30 30 H 1.08997 * 109.47136 * 65.49297 * 1 2 3 31 31 H 1.08998 * 109.47475 * 185.49489 * 1 2 3 32 32 H 1.09006 * 109.47257 * 305.49815 * 1 2 3 33 33 H 1.09000 * 109.47132 * 240.00115 * 2 1 3 34 34 H 1.08997 * 109.46968 * 120.00638 * 2 1 3 35 35 H 0.96996 * 120.00744 * 22.83360 * 7 5 3 36 36 H 1.08006 * 120.02796 * 359.97438 * 11 10 8 37 37 H 1.07996 * 119.89259 * 180.25813 * 12 11 10 38 38 H 1.09000 * 111.00378 * 153.49126 * 19 5 3 39 39 H 1.09006 * 111.00671 * 277.29720 * 19 5 3 40 40 H 1.09001 * 110.36396 * 81.82649 * 20 19 5 41 41 H 1.09003 * 110.36730 * 204.14965 * 20 19 5 42 42 H 0.97007 * 119.99621 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6268 1.9839 0.8510 5 6 1.6350 2.1423 -1.3144 6 1 1.4534 1.4102 -2.1011 7 7 0.4540 2.9849 -1.1104 8 6 -0.3276 3.3145 -2.1576 9 8 -0.0529 2.9122 -3.2717 10 6 -1.5176 4.1627 -1.9521 11 6 -1.8397 4.6211 -0.6719 12 6 -2.9487 5.4167 -0.4852 13 6 -3.7536 5.7562 -1.5627 14 9 -4.8427 6.5322 -1.3707 15 6 -3.4451 5.3019 -2.8360 16 9 -4.2336 5.6358 -3.8811 17 6 -2.3311 4.5060 -3.0370 18 9 -2.0293 4.0632 -4.2771 19 6 2.8773 3.0099 -1.6481 20 6 4.0320 2.1022 -1.1557 21 7 3.5118 1.4582 0.0640 22 6 4.2709 0.9549 1.0866 23 1 3.8036 0.6767 2.0197 24 6 5.6410 0.8026 0.9241 25 7 6.2104 1.1414 -0.2132 26 14 6.6766 0.1169 2.3193 27 1 5.8034 -0.1848 3.4819 28 1 7.3498 -1.1283 1.8702 29 1 7.6998 1.1178 2.7146 30 1 -0.3633 0.4263 -0.9351 31 1 -0.3634 -1.0229 0.0984 32 1 -0.3634 0.5968 0.8367 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 0.2369 3.3089 -0.2223 36 1 -1.2178 4.3546 0.1699 37 1 -3.1944 5.7739 0.5039 38 1 2.9517 3.1896 -2.7206 39 1 2.8566 3.9503 -1.0972 40 1 4.2716 1.3513 -1.9086 41 1 4.9123 2.7012 -0.9225 42 1 7.1678 1.0346 -0.3269 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087706653.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:46:03 Heat of formation + Delta-G solvation = -115.325232 kcal Electronic energy + Delta-G solvation = -30016.381300 eV Core-core repulsion = 25354.892676 eV Total energy + Delta-G solvation = -4661.488624 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.130 amu Computer time = 1.77 seconds Orbital eigenvalues (eV) -50.15247 -49.53689 -48.78902 -40.37382 -38.75249 -37.58760 -34.24977 -32.89745 -32.00898 -31.14299 -31.03454 -28.97548 -26.71211 -24.98845 -24.14216 -23.62573 -22.32154 -20.98041 -20.29659 -19.91622 -18.84688 -18.39124 -18.04038 -17.19793 -16.94147 -16.73403 -16.29705 -15.92126 -15.83801 -15.30457 -15.02282 -14.89434 -14.80632 -14.64501 -14.38062 -14.04704 -13.82988 -13.59608 -13.27380 -12.78086 -12.60651 -12.39772 -12.34016 -12.05116 -11.99190 -11.72048 -11.22960 -10.95549 -10.89310 -10.69205 -10.52962 -10.40809 -10.10131 -9.95530 -9.77374 -9.69995 -9.47557 -9.44340 -8.78266 -8.64450 -6.88974 -5.79154 -3.16131 -0.12245 0.22822 2.20936 2.72080 3.03630 3.16324 3.35116 3.40998 3.43416 3.64678 3.73372 3.89540 4.07614 4.24090 4.43814 4.85508 5.02629 5.16269 5.23169 5.24403 5.29350 5.32857 5.42932 5.48726 5.66910 5.72473 5.77519 5.97737 6.01601 6.14755 6.16160 6.33236 6.39046 6.47308 6.60993 6.63368 6.86127 7.04214 7.44880 7.48444 7.55770 7.74933 8.12251 8.21635 9.12827 9.73635 10.39916 11.31683 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.022614 B = 0.002533 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.856065 B =11049.811668 C =11353.658820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.133 4.133 3 C 0.161 3.839 4 H 0.036 0.964 5 C 0.137 3.863 6 H 0.097 0.903 7 N -0.703 5.703 8 C 0.556 3.444 9 O -0.518 6.518 10 C -0.149 4.149 11 C -0.037 4.037 12 C -0.142 4.142 13 C 0.120 3.880 14 F -0.115 7.115 15 C 0.021 3.979 16 F -0.114 7.114 17 C 0.157 3.843 18 F -0.092 7.092 19 C -0.157 4.157 20 C 0.172 3.828 21 N -0.594 5.594 22 C -0.227 4.227 23 H 0.077 0.923 24 C -0.004 4.004 25 N -0.917 5.917 26 Si 0.911 3.089 27 H -0.279 1.279 28 H -0.290 1.290 29 H -0.290 1.290 30 H 0.048 0.952 31 H 0.045 0.955 32 H 0.047 0.953 33 H 0.059 0.941 34 H 0.065 0.935 35 H 0.397 0.603 36 H 0.157 0.843 37 H 0.162 0.838 38 H 0.064 0.936 39 H 0.062 0.938 40 H 0.026 0.974 41 H 0.081 0.919 42 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.585 8.854 0.120 21.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.172 4.172 3 C 0.053 3.947 4 H 0.054 0.946 5 C 0.033 3.967 6 H 0.115 0.885 7 N -0.354 5.354 8 C 0.340 3.660 9 O -0.395 6.395 10 C -0.154 4.154 11 C -0.056 4.056 12 C -0.161 4.161 13 C 0.099 3.901 14 F -0.094 7.094 15 C 0.000 4.000 16 F -0.092 7.092 17 C 0.136 3.864 18 F -0.070 7.070 19 C -0.196 4.196 20 C 0.047 3.953 21 N -0.319 5.319 22 C -0.356 4.356 23 H 0.095 0.905 24 C -0.201 4.201 25 N -0.563 5.563 26 Si 0.741 3.259 27 H -0.205 1.205 28 H -0.217 1.217 29 H -0.217 1.217 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.232 0.768 36 H 0.175 0.825 37 H 0.179 0.821 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.044 0.956 41 H 0.099 0.901 42 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -19.171 8.520 -0.728 20.991 hybrid contribution 0.111 -0.099 0.685 0.701 sum -19.060 8.420 -0.043 20.837 Atomic orbital electron populations 1.21776 0.97223 1.00650 1.00861 1.22017 0.93602 0.99090 1.02535 1.21115 0.87158 0.93372 0.93024 0.94640 1.22216 0.83026 0.92364 0.99073 0.88540 1.45954 1.27499 1.51956 1.09959 1.17653 0.82197 0.80696 0.85403 1.90884 1.71955 1.53438 1.23184 1.20194 0.98474 1.03812 0.92909 1.21213 0.95331 0.93218 0.95829 1.21099 0.95225 1.00721 0.99015 1.17581 0.86494 0.93983 0.91993 1.91588 1.50721 1.71527 1.95522 1.17440 0.93465 1.04406 0.84674 1.91588 1.72002 1.90795 1.54857 1.17326 0.92676 0.94971 0.81467 1.91679 1.91969 1.86263 1.37075 1.23444 0.96563 0.99076 1.00539 1.21501 0.93366 0.93042 0.87413 1.44543 0.98219 1.68582 1.20573 1.18994 0.89058 1.35735 0.91785 0.90549 1.24877 0.97032 1.01081 0.97133 1.69933 1.10117 1.52624 1.23645 0.86072 0.80319 0.78446 0.81055 1.20461 1.21702 1.21748 0.93331 0.93585 0.93437 0.92259 0.91642 0.76759 0.82505 0.82085 0.91746 0.91926 0.95601 0.90097 0.93639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.57 37.16 0.36 -1.63 16 2 C -0.13 -2.29 5.42 -26.73 -0.14 -2.44 16 3 C 0.16 2.94 2.95 -66.79 -0.20 2.75 16 4 H 0.04 0.62 7.70 -51.93 -0.40 0.22 16 5 C 0.14 2.27 1.95 -66.09 -0.13 2.14 16 6 H 0.10 1.76 7.25 -51.93 -0.38 1.39 16 7 N -0.70 -8.89 4.87 -53.05 -0.26 -9.15 16 8 C 0.56 7.60 7.76 -12.45 -0.10 7.50 16 9 O -0.52 -9.28 15.02 5.28 0.08 -9.20 16 10 C -0.15 -1.55 5.88 -104.92 -0.62 -2.17 16 11 C -0.04 -0.24 9.53 -39.20 -0.37 -0.61 16 12 C -0.14 -0.80 10.00 -39.58 -0.40 -1.20 16 13 C 0.12 0.97 7.31 -39.25 -0.29 0.69 16 14 F -0.12 -0.99 17.17 2.25 0.04 -0.96 16 15 C 0.02 0.22 7.30 -39.37 -0.29 -0.07 16 16 F -0.11 -1.30 17.09 2.25 0.04 -1.26 16 17 C 0.16 1.82 7.29 -38.92 -0.28 1.54 16 18 F -0.09 -1.32 15.46 2.25 0.03 -1.29 16 19 C -0.16 -2.88 6.77 -24.58 -0.17 -3.05 16 20 C 0.17 3.97 5.46 -2.53 -0.01 3.96 16 21 N -0.59 -13.92 3.14 -162.35 -0.51 -14.43 16 22 C -0.23 -5.90 9.80 -15.06 -0.15 -6.05 16 23 H 0.08 1.92 7.83 -52.48 -0.41 1.51 16 24 C 0.00 -0.12 5.47 -17.43 -0.10 -0.21 16 25 N -0.92 -25.87 10.47 55.49 0.58 -25.28 16 26 Si 0.91 21.21 29.55 -169.99 -5.02 16.19 16 27 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 28 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 29 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 30 H 0.05 0.66 7.38 -51.93 -0.38 0.28 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 1.11 8.08 -51.93 -0.42 0.69 16 34 H 0.06 1.22 7.93 -51.93 -0.41 0.81 16 35 H 0.40 3.76 6.37 -40.82 -0.26 3.50 16 36 H 0.16 0.60 6.40 -52.48 -0.34 0.26 16 37 H 0.16 0.44 8.06 -52.49 -0.42 0.02 16 38 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.03 0.66 8.11 -51.93 -0.42 0.24 16 41 H 0.08 2.09 6.72 -51.93 -0.35 1.74 16 42 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 359.27 15.07 5.41 5.41 Total: -1.00 -31.12 359.27 -7.50 -38.63 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: -5.02 Total: 0.20 kcal Atomic # 6 Polarization: 4.04 SS G_CDS: -2.88 Total: 1.16 kcal Atomic # 7 Polarization: -48.68 SS G_CDS: -0.19 Total: -48.87 kcal Atomic # 8 Polarization: -9.28 SS G_CDS: 0.08 Total: -9.20 kcal Atomic # 9 Polarization: -3.62 SS G_CDS: 0.11 Total: -3.51 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.12 -7.50 -38.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087706653.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.699 kcal (2) G-P(sol) polarization free energy of solvation -31.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.77 seconds