Wall clock time and date at job start Wed Apr 1 2020 00:46:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47057 * 2 1 4 4 H 1.09000 * 109.99916 * 305.73102 * 3 2 1 5 5 C 1.54340 * 109.99273 * 184.69906 * 3 2 1 6 6 H 1.09003 * 110.50790 * 336.97611 * 5 3 2 7 7 N 1.46498 * 111.00241 * 100.12584 * 5 3 2 8 8 C 1.34777 * 119.99913 * 200.23511 * 7 5 3 9 9 O 1.21589 * 119.99973 * 0.02562 * 8 7 5 10 10 C 1.47571 * 120.00141 * 180.02562 * 8 7 5 11 11 C 1.39753 * 120.13027 * 359.97438 * 10 8 7 12 12 C 1.37917 * 119.87611 * 179.97438 * 11 10 8 13 13 F 1.35098 * 119.92908 * 179.97438 * 12 11 10 14 14 C 1.38940 * 120.14605 * 0.02562 * 12 11 10 15 15 F 1.35105 * 119.86839 * 179.97438 * 14 12 11 16 16 C 1.38452 * 120.27002 * 359.97128 * 14 12 11 17 17 C 1.38215 * 120.11659 * 359.79501 * 16 14 12 18 18 F 1.35101 * 120.07219 * 180.25628 * 17 16 14 19 19 C 1.55154 * 103.01909 * 218.66645 * 5 3 2 20 20 C 1.54915 * 101.58149 * 35.30574 * 19 5 3 21 21 N 1.47013 * 109.88115 * 66.83036 * 3 2 1 22 22 C 1.36939 * 125.65006 * 298.38988 * 21 3 2 23 23 H 1.07998 * 120.00219 * 325.76779 * 22 21 3 24 24 C 1.38811 * 119.99832 * 145.76486 * 22 21 3 25 25 N 1.31621 * 120.00421 * 339.05074 * 24 22 21 26 26 Si 1.86794 * 120.00074 * 159.04938 * 24 22 21 27 27 H 1.48496 * 109.47774 * 180.02562 * 26 24 22 28 28 H 1.48501 * 109.47174 * 300.00422 * 26 24 22 29 29 H 1.48505 * 109.47224 * 59.99674 * 26 24 22 30 30 H 1.08992 * 109.47208 * 291.18083 * 1 2 3 31 31 H 1.09008 * 109.47223 * 51.18114 * 1 2 3 32 32 H 1.09004 * 109.47139 * 171.17725 * 1 2 3 33 33 H 1.09008 * 109.46903 * 240.00295 * 2 1 3 34 34 H 1.08999 * 109.47326 * 120.00318 * 2 1 3 35 35 H 0.96999 * 120.00336 * 20.23600 * 7 5 3 36 36 H 1.07999 * 120.06341 * 0.02562 * 11 10 8 37 37 H 1.07995 * 119.94073 * 180.02562 * 16 14 12 38 38 H 1.08993 * 111.00570 * 277.22644 * 19 5 3 39 39 H 1.09004 * 111.03140 * 153.39091 * 19 5 3 40 40 H 1.09002 * 110.36505 * 204.14984 * 20 19 5 41 41 H 1.09001 * 110.46109 * 81.87990 * 20 19 5 42 42 H 0.97003 * 119.99485 * 353.68314 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6003 1.9933 -0.8315 5 6 3.5787 1.4582 -0.1188 6 1 3.9978 0.5119 0.2234 7 7 3.9963 1.7406 -1.4943 8 6 5.2358 1.4061 -1.9045 9 8 6.0073 0.8695 -1.1329 10 6 5.6566 1.6911 -3.2899 11 6 4.7719 2.3073 -4.1791 12 6 5.1709 2.5717 -5.4725 13 9 4.3164 3.1669 -6.3332 14 6 6.4494 2.2264 -5.8927 15 9 6.8342 2.4875 -7.1612 16 6 7.3308 1.6157 -5.0169 17 6 6.9441 1.3500 -3.7168 18 9 7.8067 0.7588 -2.8614 19 6 3.9906 2.6157 0.8286 20 6 2.9392 2.4820 1.9584 21 7 1.6938 2.0952 1.2710 22 6 0.4247 2.3040 1.7413 23 1 -0.3790 2.5148 1.0514 24 6 0.1713 2.2446 3.1048 25 7 1.0006 1.6038 3.9011 26 14 -1.3467 3.0740 3.8096 27 1 -1.3870 2.8663 5.2794 28 1 -1.2966 4.5291 3.5171 29 1 -2.5632 2.4868 3.1927 30 1 -0.3633 0.3713 0.9582 31 1 -0.3634 0.6442 -0.8007 32 1 -0.3634 -1.0155 -0.1576 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 3.3807 2.1684 -2.1099 36 1 3.7780 2.5767 -3.8538 37 1 8.3235 1.3499 -5.3490 38 1 3.9053 3.5799 0.3275 39 1 4.9993 2.4659 1.2138 40 1 2.8095 3.4354 2.4706 41 1 3.2374 1.7092 2.6669 42 1 1.7378 1.0964 3.5266 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087706708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:46:07 Heat of formation + Delta-G solvation = -122.114361 kcal Electronic energy + Delta-G solvation = -29944.300535 eV Core-core repulsion = 25282.517512 eV Total energy + Delta-G solvation = -4661.783023 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.130 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -50.07312 -49.35594 -49.12660 -40.39105 -38.78018 -37.73564 -34.46107 -32.66809 -32.38973 -31.44571 -30.63937 -28.63984 -26.99887 -25.00455 -24.35377 -23.50541 -21.93250 -21.21318 -20.42621 -19.77451 -18.93041 -18.44233 -18.09883 -17.37190 -17.03690 -17.02253 -16.24584 -15.94702 -15.74990 -15.52631 -15.08840 -15.04372 -14.83554 -14.62389 -14.34478 -14.04840 -13.71527 -13.53325 -13.20664 -12.97870 -12.83041 -12.43442 -12.34716 -12.30254 -12.09021 -11.64926 -11.13147 -10.99708 -10.79856 -10.55603 -10.33986 -10.20528 -10.11251 -10.01343 -9.90218 -9.86447 -9.43571 -9.22891 -8.88664 -8.44499 -6.90703 -6.06031 -3.37309 -0.17137 0.19592 2.13776 2.85020 2.99699 3.09140 3.36479 3.44925 3.48157 3.66041 3.74116 3.75938 4.08021 4.39917 4.52762 4.80722 4.90437 4.98405 5.05522 5.21425 5.24799 5.30518 5.33108 5.37546 5.62926 5.87509 5.93701 5.97502 5.97851 6.11160 6.21766 6.30663 6.43543 6.54162 6.62291 6.72290 6.87861 6.99407 7.06093 7.32567 7.38969 7.89612 8.04902 8.47002 8.96202 9.72826 10.34256 11.17144 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.019217 B = 0.002648 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.677921 B =10570.103850 C =11230.027751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.122 4.122 3 C 0.155 3.845 4 H 0.036 0.964 5 C 0.134 3.866 6 H 0.096 0.904 7 N -0.705 5.705 8 C 0.557 3.443 9 O -0.517 6.517 10 C -0.149 4.149 11 C -0.064 4.064 12 C 0.054 3.946 13 F -0.119 7.119 14 C 0.123 3.877 15 F -0.115 7.115 16 C -0.174 4.174 17 C 0.184 3.816 18 F -0.098 7.098 19 C -0.144 4.144 20 C 0.140 3.860 21 N -0.588 5.588 22 C -0.326 4.326 23 H 0.057 0.943 24 C -0.019 4.019 25 N -0.910 5.910 26 Si 1.067 2.933 27 H -0.285 1.285 28 H -0.293 1.293 29 H -0.291 1.291 30 H 0.091 0.909 31 H 0.037 0.963 32 H 0.029 0.971 33 H 0.038 0.962 34 H 0.057 0.943 35 H 0.397 0.603 36 H 0.162 0.838 37 H 0.167 0.833 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.049 0.951 41 H 0.032 0.968 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.085 0.991 -19.343 21.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.161 4.161 3 C 0.048 3.952 4 H 0.054 0.946 5 C 0.030 3.970 6 H 0.114 0.886 7 N -0.356 5.356 8 C 0.342 3.658 9 O -0.393 6.393 10 C -0.153 4.153 11 C -0.084 4.084 12 C 0.033 3.967 13 F -0.097 7.097 14 C 0.102 3.898 15 F -0.093 7.093 16 C -0.194 4.194 17 C 0.162 3.838 18 F -0.076 7.076 19 C -0.183 4.183 20 C 0.015 3.985 21 N -0.314 5.314 22 C -0.454 4.454 23 H 0.075 0.925 24 C -0.223 4.223 25 N -0.549 5.549 26 Si 0.896 3.104 27 H -0.211 1.211 28 H -0.220 1.220 29 H -0.218 1.218 30 H 0.110 0.890 31 H 0.056 0.944 32 H 0.048 0.952 33 H 0.056 0.944 34 H 0.075 0.925 35 H 0.233 0.767 36 H 0.180 0.820 37 H 0.185 0.815 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.068 0.932 41 H 0.050 0.950 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 9.740 0.993 -17.342 19.915 hybrid contribution 0.567 -0.158 -2.155 2.234 sum 10.307 0.835 -19.496 22.069 Atomic orbital electron populations 1.21847 0.95543 0.98783 1.04228 1.21874 0.97157 0.97432 0.99685 1.21241 0.89302 0.92523 0.92113 0.94642 1.22194 0.96162 0.99376 0.79239 0.88612 1.45959 1.13806 1.61376 1.14475 1.17670 0.82735 0.79633 0.85791 1.90882 1.52037 1.41821 1.54581 1.20091 0.93872 1.05065 0.96283 1.21147 1.00879 0.96025 0.90335 1.17384 0.87696 1.02438 0.89140 1.91592 1.68576 1.81027 1.68537 1.17429 0.91966 0.99764 0.80620 1.91596 1.91046 1.91432 1.35221 1.20950 1.02411 1.04105 0.91926 1.17225 0.86623 0.93041 0.86870 1.91674 1.67548 1.79696 1.68658 1.23188 0.99547 0.97638 0.97953 1.21604 0.85439 0.98574 0.92900 1.44429 1.01892 1.65681 1.19401 1.19518 0.84870 1.47891 0.93164 0.92496 1.26003 1.03817 0.98730 0.93777 1.70762 1.17535 1.28468 1.38133 0.83498 0.74703 0.75894 0.76273 1.21070 1.21966 1.21837 0.89000 0.94351 0.95231 0.94373 0.92456 0.76702 0.82049 0.81543 0.91574 0.91427 0.93248 0.95040 0.91747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.80 9.15 37.16 0.34 -2.46 16 2 C -0.12 -2.28 5.45 -26.73 -0.15 -2.42 16 3 C 0.16 2.93 2.99 -66.95 -0.20 2.73 16 4 H 0.04 0.65 7.69 -51.93 -0.40 0.25 16 5 C 0.13 2.26 2.76 -66.09 -0.18 2.07 16 6 H 0.10 1.76 7.39 -51.93 -0.38 1.38 16 7 N -0.71 -9.29 5.16 -53.05 -0.27 -9.56 16 8 C 0.56 7.66 7.76 -12.45 -0.10 7.56 16 9 O -0.52 -9.09 15.06 5.29 0.08 -9.01 16 10 C -0.15 -1.55 5.88 -104.92 -0.62 -2.16 16 11 C -0.06 -0.52 9.51 -39.13 -0.37 -0.89 16 12 C 0.05 0.45 7.29 -39.44 -0.29 0.16 16 13 F -0.12 -1.09 17.17 2.25 0.04 -1.06 16 14 C 0.12 0.99 7.31 -39.24 -0.29 0.70 16 15 F -0.11 -0.98 17.17 2.25 0.04 -0.94 16 16 C -0.17 -1.30 9.99 -39.51 -0.39 -1.69 16 17 C 0.18 1.84 7.28 -38.98 -0.28 1.56 16 18 F -0.10 -1.21 15.54 2.25 0.04 -1.18 16 19 C -0.14 -2.56 6.77 -24.58 -0.17 -2.72 16 20 C 0.14 3.09 5.81 -2.53 -0.01 3.08 16 21 N -0.59 -13.58 2.82 -162.57 -0.46 -14.03 16 22 C -0.33 -8.37 7.01 -15.06 -0.11 -8.48 16 23 H 0.06 1.47 7.66 -52.49 -0.40 1.07 16 24 C -0.02 -0.52 5.23 -17.43 -0.09 -0.61 16 25 N -0.91 -26.24 13.14 55.49 0.73 -25.52 16 26 Si 1.07 24.22 29.97 -169.99 -5.09 19.12 16 27 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 28 H -0.29 -6.44 7.11 56.52 0.40 -6.03 16 29 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 30 H 0.09 2.08 5.69 -51.93 -0.30 1.79 16 31 H 0.04 0.68 8.12 -51.92 -0.42 0.26 16 32 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.04 0.62 8.14 -51.92 -0.42 0.20 16 34 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.40 4.12 6.36 -40.82 -0.26 3.86 16 36 H 0.16 0.97 6.40 -52.49 -0.34 0.64 16 37 H 0.17 0.84 8.06 -52.49 -0.42 0.42 16 38 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 39 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.03 0.76 6.68 -51.93 -0.35 0.41 16 42 H 0.27 7.87 6.19 -40.82 -0.25 7.62 16 LS Contribution 356.61 15.07 5.37 5.37 Total: -1.00 -30.37 356.61 -7.29 -37.66 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -4.85 Total: 2.72 kcal Atomic # 6 Polarization: -0.68 SS G_CDS: -2.90 Total: -3.58 kcal Atomic # 7 Polarization: -49.11 SS G_CDS: 0.00 Total: -49.11 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: 0.08 Total: -9.01 kcal Atomic # 9 Polarization: -3.28 SS G_CDS: 0.11 Total: -3.17 kcal Atomic # 14 Polarization: 24.22 SS G_CDS: -5.09 Total: 19.12 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.37 -7.29 -37.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087706708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.459 kcal (2) G-P(sol) polarization free energy of solvation -30.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds