Wall clock time and date at job start Wed Apr 1 2020 00:46:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47057 * 2 1 4 4 H 1.09000 * 109.99916 * 305.73102 * 3 2 1 5 5 C 1.54340 * 109.99273 * 184.69906 * 3 2 1 6 6 H 1.09003 * 110.50790 * 336.97611 * 5 3 2 7 7 N 1.46498 * 111.00241 * 100.12584 * 5 3 2 8 8 C 1.34777 * 119.99913 * 200.23511 * 7 5 3 9 9 O 1.21589 * 119.99973 * 0.02562 * 8 7 5 10 10 C 1.47571 * 120.00141 * 180.02562 * 8 7 5 11 11 C 1.39753 * 120.13027 * 359.97438 * 10 8 7 12 12 C 1.37917 * 119.87611 * 179.97438 * 11 10 8 13 13 F 1.35098 * 119.92908 * 179.97438 * 12 11 10 14 14 C 1.38940 * 120.14605 * 0.02562 * 12 11 10 15 15 F 1.35105 * 119.86839 * 179.97438 * 14 12 11 16 16 C 1.38452 * 120.27002 * 359.97128 * 14 12 11 17 17 C 1.38215 * 120.11659 * 359.79501 * 16 14 12 18 18 F 1.35101 * 120.07219 * 180.25628 * 17 16 14 19 19 C 1.55154 * 103.01909 * 218.66645 * 5 3 2 20 20 C 1.54915 * 101.58149 * 35.30574 * 19 5 3 21 21 N 1.47013 * 109.88115 * 66.83036 * 3 2 1 22 22 C 1.36939 * 125.65006 * 298.38988 * 21 3 2 23 23 H 1.07998 * 120.00219 * 325.76779 * 22 21 3 24 24 C 1.38811 * 119.99832 * 145.76486 * 22 21 3 25 25 N 1.31621 * 120.00421 * 339.05074 * 24 22 21 26 26 Si 1.86794 * 120.00074 * 159.04938 * 24 22 21 27 27 H 1.48496 * 109.47774 * 180.02562 * 26 24 22 28 28 H 1.48501 * 109.47174 * 300.00422 * 26 24 22 29 29 H 1.48505 * 109.47224 * 59.99674 * 26 24 22 30 30 H 1.08992 * 109.47208 * 291.18083 * 1 2 3 31 31 H 1.09008 * 109.47223 * 51.18114 * 1 2 3 32 32 H 1.09004 * 109.47139 * 171.17725 * 1 2 3 33 33 H 1.09008 * 109.46903 * 240.00295 * 2 1 3 34 34 H 1.08999 * 109.47326 * 120.00318 * 2 1 3 35 35 H 0.96999 * 120.00336 * 20.23600 * 7 5 3 36 36 H 1.07999 * 120.06341 * 0.02562 * 11 10 8 37 37 H 1.07995 * 119.94073 * 180.02562 * 16 14 12 38 38 H 1.08993 * 111.00570 * 277.22644 * 19 5 3 39 39 H 1.09004 * 111.03140 * 153.39091 * 19 5 3 40 40 H 1.09002 * 110.36505 * 204.14984 * 20 19 5 41 41 H 1.09001 * 110.46109 * 81.87990 * 20 19 5 42 42 H 0.97003 * 119.99485 * 353.68314 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6003 1.9933 -0.8315 5 6 3.5787 1.4582 -0.1188 6 1 3.9978 0.5119 0.2234 7 7 3.9963 1.7406 -1.4943 8 6 5.2358 1.4061 -1.9045 9 8 6.0073 0.8695 -1.1329 10 6 5.6566 1.6911 -3.2899 11 6 4.7719 2.3073 -4.1791 12 6 5.1709 2.5717 -5.4725 13 9 4.3164 3.1669 -6.3332 14 6 6.4494 2.2264 -5.8927 15 9 6.8342 2.4875 -7.1612 16 6 7.3308 1.6157 -5.0169 17 6 6.9441 1.3500 -3.7168 18 9 7.8067 0.7588 -2.8614 19 6 3.9906 2.6157 0.8286 20 6 2.9392 2.4820 1.9584 21 7 1.6938 2.0952 1.2710 22 6 0.4247 2.3040 1.7413 23 1 -0.3790 2.5148 1.0514 24 6 0.1713 2.2446 3.1048 25 7 1.0006 1.6038 3.9011 26 14 -1.3467 3.0740 3.8096 27 1 -1.3870 2.8663 5.2794 28 1 -1.2966 4.5291 3.5171 29 1 -2.5632 2.4868 3.1927 30 1 -0.3633 0.3713 0.9582 31 1 -0.3634 0.6442 -0.8007 32 1 -0.3634 -1.0155 -0.1576 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 3.3807 2.1684 -2.1099 36 1 3.7780 2.5767 -3.8538 37 1 8.3235 1.3499 -5.3490 38 1 3.9053 3.5799 0.3275 39 1 4.9993 2.4659 1.2138 40 1 2.8095 3.4354 2.4706 41 1 3.2374 1.7092 2.6669 42 1 1.7378 1.0964 3.5266 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087706708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:46:06 Heat of formation + Delta-G solvation = -139.514316 kcal Electronic energy + Delta-G solvation = -29945.055053 eV Core-core repulsion = 25282.517512 eV Total energy + Delta-G solvation = -4662.537542 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.130 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -50.73964 -50.18680 -49.79813 -41.47971 -39.93103 -38.97406 -35.89466 -34.31882 -33.84160 -32.47902 -31.38769 -30.34029 -28.51716 -26.45181 -25.46625 -24.38226 -23.50483 -22.44628 -21.78993 -21.31541 -19.77419 -19.35300 -19.11637 -18.93865 -17.87756 -17.72543 -17.52899 -16.78435 -16.71378 -16.22817 -16.13564 -16.06967 -15.81674 -15.72287 -15.68991 -15.49772 -15.14837 -14.93630 -14.62995 -14.46791 -14.00578 -13.78235 -13.56969 -13.31048 -12.98228 -12.94247 -12.83290 -12.66374 -12.51245 -12.18103 -11.91172 -11.85446 -11.74598 -11.55027 -11.36764 -11.23754 -10.53988 -10.43319 -10.21216 -9.89468 -8.87273 -8.11090 -5.41841 -0.90956 -0.44869 1.31634 1.60982 1.67631 1.79071 1.85724 2.17846 2.30864 2.66743 2.67875 3.04968 3.09608 3.26020 3.29800 3.51034 3.71544 3.73388 3.77114 4.08650 4.15002 4.24024 4.28724 4.35541 4.40565 4.44382 4.56641 4.58454 4.61324 4.68787 4.87402 4.94748 4.99634 5.06744 5.14974 5.23219 5.29670 5.32434 5.52603 5.68584 5.91102 6.32728 6.43119 6.96809 7.01093 7.74151 8.38917 9.08999 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.019217 B = 0.002648 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.677921 B =10570.103850 C =11230.027751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.118 4.118 3 C 0.155 3.845 4 H 0.057 0.943 5 C 0.151 3.849 6 H 0.079 0.921 7 N -0.693 5.693 8 C 0.560 3.440 9 O -0.560 6.560 10 C -0.158 4.158 11 C -0.047 4.047 12 C 0.054 3.946 13 F -0.122 7.122 14 C 0.130 3.870 15 F -0.115 7.115 16 C -0.156 4.156 17 C 0.171 3.829 18 F -0.116 7.116 19 C -0.128 4.128 20 C 0.144 3.856 21 N -0.605 5.605 22 C -0.313 4.313 23 H 0.058 0.942 24 C -0.075 4.075 25 N -0.947 5.947 26 Si 1.111 2.889 27 H -0.299 1.299 28 H -0.279 1.279 29 H -0.273 1.273 30 H 0.050 0.950 31 H 0.053 0.947 32 H 0.047 0.953 33 H 0.070 0.930 34 H 0.027 0.973 35 H 0.415 0.585 36 H 0.185 0.815 37 H 0.192 0.808 38 H 0.082 0.918 39 H 0.071 0.929 40 H 0.026 0.974 41 H 0.002 0.998 42 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.859 1.783 -22.676 24.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.158 4.158 3 C 0.048 3.952 4 H 0.074 0.926 5 C 0.045 3.955 6 H 0.097 0.903 7 N -0.345 5.345 8 C 0.347 3.653 9 O -0.439 6.439 10 C -0.163 4.163 11 C -0.067 4.067 12 C 0.034 3.966 13 F -0.101 7.101 14 C 0.109 3.891 15 F -0.093 7.093 16 C -0.175 4.175 17 C 0.150 3.850 18 F -0.094 7.094 19 C -0.167 4.167 20 C 0.018 3.982 21 N -0.331 5.331 22 C -0.442 4.442 23 H 0.076 0.924 24 C -0.272 4.272 25 N -0.589 5.589 26 Si 0.936 3.064 27 H -0.225 1.225 28 H -0.206 1.206 29 H -0.199 1.199 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.088 0.912 34 H 0.046 0.954 35 H 0.254 0.746 36 H 0.202 0.798 37 H 0.209 0.791 38 H 0.101 0.899 39 H 0.089 0.911 40 H 0.044 0.956 41 H 0.020 0.980 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 9.497 1.803 -20.751 22.892 hybrid contribution 0.679 -0.415 -1.274 1.502 sum 10.177 1.388 -22.024 24.301 Atomic orbital electron populations 1.21729 0.95578 1.00107 1.02378 1.21821 0.97034 0.97199 0.99735 1.21355 0.90799 0.92542 0.90474 0.92567 1.21731 0.94523 0.98144 0.81064 0.90338 1.45676 1.14259 1.61442 1.13133 1.18062 0.82046 0.78407 0.86760 1.90870 1.53178 1.43729 1.56120 1.19761 0.94674 1.07092 0.94734 1.21214 1.01223 0.94576 0.89649 1.17409 0.87711 1.02357 0.89125 1.91593 1.68725 1.81104 1.68630 1.17481 0.91886 0.99201 0.80522 1.91605 1.91050 1.91361 1.35324 1.21048 1.03292 1.02682 0.90491 1.17446 0.86412 0.93598 0.87541 1.91632 1.68124 1.80226 1.69431 1.23033 0.98140 0.98949 0.96603 1.21444 0.86626 0.96313 0.93824 1.44635 1.01464 1.66563 1.20469 1.19691 0.85839 1.45591 0.93071 0.92395 1.27193 1.05704 0.99377 0.94893 1.70876 1.18620 1.30912 1.38491 0.82898 0.72739 0.75832 0.74890 1.22516 1.20565 1.19865 0.93054 0.92789 0.93351 0.91168 0.95447 0.74643 0.79814 0.79050 0.89893 0.91063 0.95568 0.97971 0.93438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.16 9.15 71.98 0.66 -4.50 16 2 C -0.12 -4.30 5.45 30.59 0.17 -4.13 16 3 C 0.15 5.63 2.99 45.35 0.14 5.77 16 4 H 0.06 1.87 7.69 -2.39 -0.02 1.85 16 5 C 0.15 4.91 2.76 46.18 0.13 5.03 16 6 H 0.08 2.89 7.39 -2.39 -0.02 2.87 16 7 N -0.69 -16.55 5.16 -440.01 -2.27 -18.82 16 8 C 0.56 14.45 7.76 86.71 0.67 15.12 16 9 O -0.56 -19.45 15.06 -4.00 -0.06 -19.51 16 10 C -0.16 -2.92 5.88 -20.05 -0.12 -3.03 16 11 C -0.05 -0.60 9.51 22.56 0.21 -0.38 16 12 C 0.05 0.72 7.29 22.36 0.16 0.89 16 13 F -0.12 -1.85 17.17 44.97 0.77 -1.08 16 14 C 0.13 1.67 7.31 22.49 0.16 1.83 16 15 F -0.12 -1.61 17.17 44.97 0.77 -0.84 16 16 C -0.16 -1.87 9.99 22.32 0.22 -1.65 16 17 C 0.17 3.09 7.28 22.66 0.16 3.26 16 18 F -0.12 -2.78 15.54 44.97 0.70 -2.08 16 19 C -0.13 -4.49 6.77 31.99 0.22 -4.27 16 20 C 0.14 6.55 5.81 86.86 0.50 7.05 16 21 N -0.61 -28.16 2.82 -668.24 -1.88 -30.05 16 22 C -0.31 -16.17 7.01 84.03 0.59 -15.58 16 23 H 0.06 2.96 7.66 -2.91 -0.02 2.94 16 24 C -0.07 -4.08 5.23 84.86 0.44 -3.64 16 25 N -0.95 -56.96 13.14 21.65 0.28 -56.68 16 26 Si 1.11 49.45 29.97 68.60 2.06 51.51 16 27 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16 28 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 29 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 30 H 0.05 2.32 5.69 -2.39 -0.01 2.30 16 31 H 0.05 1.78 8.12 -2.38 -0.02 1.76 16 32 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 33 H 0.07 2.11 8.14 -2.38 -0.02 2.09 16 34 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.41 7.03 6.36 -92.71 -0.59 6.44 16 36 H 0.18 1.41 6.40 -2.91 -0.02 1.39 16 37 H 0.19 1.29 8.06 -2.91 -0.02 1.27 16 38 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 39 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 40 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.00 0.13 6.68 -2.39 -0.02 0.11 16 42 H 0.26 15.70 6.19 -92.71 -0.57 15.12 16 Total: -1.00 -68.69 356.61 5.39 -63.30 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: 0.69 Total: 12.50 kcal Atomic # 6 Polarization: -2.57 SS G_CDS: 4.33 Total: 1.76 kcal Atomic # 7 Polarization: -101.68 SS G_CDS: -3.87 Total: -105.55 kcal Atomic # 8 Polarization: -19.45 SS G_CDS: -0.06 Total: -19.51 kcal Atomic # 9 Polarization: -6.25 SS G_CDS: 2.24 Total: -4.00 kcal Atomic # 14 Polarization: 49.45 SS G_CDS: 2.06 Total: 51.51 kcal Total: -68.69 5.39 -63.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087706708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.219 kcal (2) G-P(sol) polarization free energy of solvation -68.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds