Wall clock time and date at job start Wed Apr 1 2020 02:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.87378 * 2 1 4 4 C 1.54327 * 110.00988 * 238.90078 * 2 1 3 5 5 H 1.09006 * 110.71875 * 336.68167 * 4 2 1 6 6 N 1.46497 * 110.71961 * 99.95420 * 4 2 1 7 7 C 1.34783 * 120.00261 * 205.00149 * 6 4 2 8 8 O 1.21556 * 119.99255 * 359.97438 * 7 6 4 9 9 C 1.47846 * 120.00178 * 179.97438 * 7 6 4 10 10 C 1.39572 * 120.14171 * 359.72112 * 9 7 6 11 11 C 1.37965 * 119.84720 * 179.79326 * 10 9 7 12 12 C 1.38357 * 120.14365 * 0.48647 * 11 10 9 13 13 C 1.50705 * 119.84964 * 179.77132 * 12 11 10 14 14 F 1.39897 * 109.46659 * 269.97341 * 13 12 11 15 15 F 1.39892 * 109.47203 * 29.97218 * 13 12 11 16 16 F 1.39893 * 109.47025 * 149.97707 * 13 12 11 17 17 C 1.38351 * 120.29366 * 359.74211 * 12 11 10 18 18 C 1.37960 * 120.14799 * 0.02589 * 17 12 11 19 19 C 1.55153 * 102.94211 * 218.31833 * 4 2 1 20 20 C 1.54908 * 101.58630 * 35.49999 * 19 4 2 21 21 N 1.47022 * 109.88494 * 121.01779 * 2 1 3 22 22 C 1.36943 * 125.64515 * 298.54524 * 21 2 1 23 23 H 1.08001 * 120.00125 * 0.02562 * 22 21 2 24 24 C 1.38814 * 119.99978 * 179.97438 * 22 21 2 25 25 N 1.31626 * 119.99681 * 0.02562 * 24 22 21 26 26 Si 1.86792 * 120.00049 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47197 * 90.00239 * 26 24 22 28 28 H 1.48496 * 109.47261 * 210.00377 * 26 24 22 29 29 H 1.48497 * 109.47335 * 330.00076 * 26 24 22 30 30 H 1.09000 * 109.46713 * 300.70085 * 1 2 3 31 31 H 1.08998 * 109.47126 * 60.69984 * 1 2 3 32 32 H 1.09002 * 109.46967 * 180.70601 * 1 2 3 33 33 H 0.97002 * 119.99955 * 24.99673 * 6 4 2 34 34 H 1.08001 * 120.07716 * 0.02562 * 10 9 7 35 35 H 1.08004 * 119.92493 * 180.23573 * 11 10 9 36 36 H 1.08004 * 119.92984 * 180.02562 * 17 12 11 37 37 H 1.08001 * 120.07470 * 180.02562 * 18 17 12 38 38 H 1.09006 * 111.00338 * 277.42810 * 19 4 2 39 39 H 1.09003 * 111.00533 * 153.57766 * 19 4 2 40 40 H 1.08992 * 110.36921 * 204.15530 * 20 19 4 41 41 H 1.09001 * 110.45822 * 81.87204 * 20 19 4 42 42 H 0.96999 * 119.99612 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0581 -0.7490 -1.2417 5 1 1.3103 -1.4472 -1.6178 6 7 2.4580 0.1969 -2.2864 7 6 2.4632 -0.1881 -3.5781 8 8 2.1365 -1.3203 -3.8760 9 6 2.8663 0.7668 -4.6324 10 6 3.2364 2.0693 -4.2941 11 6 3.6155 2.9541 -5.2825 12 6 3.6197 2.5555 -6.6074 13 6 4.0302 3.5290 -7.6822 14 9 2.9040 4.2230 -8.1374 15 9 4.9577 4.4366 -7.1599 16 9 4.6096 2.8309 -8.7471 17 6 3.2494 1.2673 -6.9499 18 6 2.8727 0.3712 -5.9709 19 6 3.2918 -1.5108 -0.6894 20 6 2.8177 -1.8763 0.7394 21 7 2.0301 -0.7124 1.1849 22 6 1.8015 -0.3546 2.4868 23 1 1.2075 0.5193 2.7103 24 6 2.3322 -1.1156 3.5192 25 7 3.0557 -2.1810 3.2468 26 14 2.0198 -0.6279 5.2951 27 1 0.7804 -1.2876 5.7789 28 1 3.1678 -1.0546 6.1349 29 1 1.8629 0.8461 5.3834 30 1 -0.3633 0.5247 0.8836 31 1 -0.3633 0.5029 -0.8962 32 1 -0.3633 -1.0276 0.0127 33 1 2.7190 1.1004 -2.0486 34 1 3.2296 2.3828 -3.2606 35 1 3.9058 3.9611 -5.0218 36 1 3.2552 0.9623 -7.9860 37 1 2.5842 -0.6343 -6.2395 38 1 4.1682 -0.8634 -0.6566 39 1 3.4921 -2.4074 -1.2759 40 1 3.6743 -2.0285 1.3959 41 1 2.1942 -2.7701 0.7169 42 1 3.4269 -2.7126 3.9683 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088998367.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:26:30 Heat of formation + Delta-G solvation = -132.303358 kcal Electronic energy + Delta-G solvation = -29187.503036 eV Core-core repulsion = 24525.278185 eV Total energy + Delta-G solvation = -4662.224851 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.130 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -50.55319 -48.06775 -48.01145 -40.53014 -38.96099 -37.52807 -34.28289 -32.78172 -31.95715 -31.47007 -30.43295 -28.74540 -26.94085 -24.84858 -24.05535 -23.33018 -22.93744 -20.79780 -20.29823 -19.84284 -18.96111 -18.86514 -18.74548 -17.71094 -16.88144 -16.26105 -15.49225 -15.30466 -14.96236 -14.86466 -14.83531 -14.63370 -14.54804 -14.46697 -14.27730 -14.16377 -13.99699 -13.90664 -13.65585 -13.32032 -13.13557 -12.83471 -12.19779 -12.11900 -12.00982 -11.73017 -11.60298 -11.19979 -10.91249 -10.88991 -10.65723 -10.52094 -10.14035 -9.94782 -9.80953 -9.69948 -9.61951 -9.57830 -8.78288 -8.68772 -6.93242 -5.70519 -3.13683 0.10187 0.78500 2.22699 2.46425 3.07846 3.29130 3.36401 3.39232 3.41627 3.43394 3.59629 4.01174 4.29094 4.32607 4.42411 4.51865 4.74495 4.88327 5.06039 5.20857 5.36281 5.40120 5.47004 5.55446 5.60310 5.64912 5.74642 5.82242 6.05214 6.14748 6.18768 6.23662 6.27109 6.44338 6.52449 6.63926 6.79564 7.01840 7.44855 7.54087 7.57303 7.79918 8.16571 8.29958 9.15363 9.76226 10.39489 11.32840 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.023889 B = 0.002103 C = 0.002038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.784906 B =13312.003310 C =13734.015657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.155 3.845 3 H 0.035 0.965 4 C 0.133 3.867 5 H 0.097 0.903 6 N -0.706 5.706 7 C 0.552 3.448 8 O -0.532 6.532 9 C -0.093 4.093 10 C -0.088 4.088 11 C -0.076 4.076 12 C -0.167 4.167 13 C 0.508 3.492 14 F -0.175 7.175 15 F -0.176 7.176 16 F -0.176 7.176 17 C -0.078 4.078 18 C -0.063 4.063 19 C -0.153 4.153 20 C 0.152 3.848 21 N -0.595 5.595 22 C -0.222 4.222 23 H 0.078 0.922 24 C -0.010 4.010 25 N -0.921 5.921 26 Si 0.915 3.085 27 H -0.289 1.289 28 H -0.290 1.290 29 H -0.281 1.281 30 H 0.055 0.945 31 H 0.038 0.962 32 H 0.052 0.948 33 H 0.398 0.602 34 H 0.141 0.859 35 H 0.143 0.857 36 H 0.142 0.858 37 H 0.150 0.850 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.110 0.890 41 H 0.015 0.985 42 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.909 10.900 -21.392 24.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.047 3.953 3 H 0.053 0.947 4 C 0.029 3.971 5 H 0.115 0.885 6 N -0.356 5.356 7 C 0.337 3.663 8 O -0.409 6.409 9 C -0.097 4.097 10 C -0.107 4.107 11 C -0.094 4.094 12 C -0.169 4.169 13 C 0.454 3.546 14 F -0.157 7.157 15 F -0.157 7.157 16 F -0.157 7.157 17 C -0.096 4.096 18 C -0.082 4.082 19 C -0.193 4.193 20 C 0.027 3.973 21 N -0.320 5.320 22 C -0.350 4.350 23 H 0.096 0.904 24 C -0.205 4.205 25 N -0.569 5.569 26 Si 0.745 3.255 27 H -0.216 1.216 28 H -0.217 1.217 29 H -0.207 1.207 30 H 0.074 0.926 31 H 0.057 0.943 32 H 0.071 0.929 33 H 0.233 0.767 34 H 0.159 0.841 35 H 0.160 0.840 36 H 0.160 0.840 37 H 0.167 0.833 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.127 0.873 41 H 0.033 0.967 42 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 1.739 10.030 -21.364 23.665 hybrid contribution -0.027 0.876 0.845 1.217 sum 1.712 10.905 -20.519 23.300 Atomic orbital electron populations 1.22246 0.97794 1.01505 0.99990 1.20992 0.92670 0.94757 0.86877 0.94714 1.22244 0.97911 0.90746 0.86208 0.88515 1.46020 1.67303 1.16320 1.05936 1.18134 0.78335 0.87172 0.82617 1.90794 1.47960 1.19873 1.82305 1.20379 1.00307 0.94299 0.94669 1.21384 0.97015 0.92196 1.00113 1.20898 0.97129 1.00691 0.90710 1.20172 1.07695 0.95267 0.93739 1.18294 0.74966 0.79997 0.81336 1.93240 1.51764 1.80647 1.90004 1.93203 1.66921 1.69160 1.86404 1.93200 1.84904 1.78773 1.58846 1.20947 0.96447 0.91323 1.00861 1.21312 0.95659 1.00508 0.90726 1.23412 0.96633 0.99374 0.99848 1.21960 0.97410 0.88437 0.89468 1.44490 1.59064 1.28418 1.00036 1.19016 1.27120 1.08373 0.80461 0.90434 1.24795 1.00277 0.97375 0.98096 1.69792 1.38876 1.17999 1.30217 0.86076 0.77282 0.77728 0.84408 1.21617 1.21652 1.20710 0.92619 0.94332 0.92865 0.76650 0.84095 0.83961 0.83977 0.83257 0.91901 0.91888 0.87257 0.96662 0.93642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.78 9.15 37.16 0.34 -2.44 16 2 C 0.16 2.96 3.47 -66.95 -0.23 2.73 16 3 H 0.04 0.64 7.72 -51.93 -0.40 0.24 16 4 C 0.13 2.29 2.85 -66.10 -0.19 2.10 16 5 H 0.10 1.80 7.27 -51.93 -0.38 1.42 16 6 N -0.71 -9.55 5.13 -52.97 -0.27 -9.82 16 7 C 0.55 7.63 7.77 -12.33 -0.10 7.54 16 8 O -0.53 -9.23 15.99 5.32 0.09 -9.14 16 9 C -0.09 -0.99 5.87 -104.97 -0.62 -1.60 16 10 C -0.09 -0.73 9.54 -39.18 -0.37 -1.11 16 11 C -0.08 -0.58 9.38 -39.64 -0.37 -0.95 16 12 C -0.17 -1.37 5.46 -104.53 -0.57 -1.94 16 13 C 0.51 4.19 3.36 36.01 0.12 4.31 16 14 F -0.18 -1.55 17.30 2.25 0.04 -1.51 16 15 F -0.18 -1.50 16.45 2.25 0.04 -1.46 16 16 F -0.18 -1.50 16.45 2.25 0.04 -1.46 16 17 C -0.08 -0.62 9.38 -39.64 -0.37 -0.99 16 18 C -0.06 -0.60 9.60 -39.19 -0.38 -0.98 16 19 C -0.15 -2.89 6.77 -24.59 -0.17 -3.06 16 20 C 0.15 3.59 5.89 -2.53 -0.01 3.57 16 21 N -0.59 -14.30 3.13 -162.57 -0.51 -14.81 16 22 C -0.22 -5.85 9.87 -15.06 -0.15 -6.00 16 23 H 0.08 1.98 7.83 -52.49 -0.41 1.57 16 24 C -0.01 -0.27 5.49 -17.43 -0.10 -0.36 16 25 N -0.92 -26.10 10.09 55.49 0.56 -25.54 16 26 Si 0.91 21.46 29.55 -169.99 -5.02 16.43 16 27 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 28 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 29 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 30 H 0.05 1.02 8.03 -51.93 -0.42 0.61 16 31 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.40 4.32 6.40 -40.82 -0.26 4.06 16 34 H 0.14 0.89 6.41 -52.49 -0.34 0.55 16 35 H 0.14 0.81 7.59 -52.48 -0.40 0.41 16 36 H 0.14 0.86 7.59 -52.48 -0.40 0.46 16 37 H 0.15 1.39 7.65 -52.49 -0.40 0.99 16 38 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 40 H 0.11 2.90 5.87 -51.93 -0.31 2.59 16 41 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 360.63 15.07 5.43 5.43 Total: -1.00 -30.53 360.63 -7.73 -38.26 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -4.96 Total: 2.79 kcal Atomic # 6 Polarization: 3.98 SS G_CDS: -3.16 Total: 0.81 kcal Atomic # 7 Polarization: -49.95 SS G_CDS: -0.22 Total: -50.17 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: 0.09 Total: -9.14 kcal Atomic # 9 Polarization: -4.54 SS G_CDS: 0.11 Total: -4.43 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.53 -7.73 -38.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088998367.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.044 kcal (2) G-P(sol) polarization free energy of solvation -30.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds