Wall clock time and date at job start Wed Apr 1 2020 02:53:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46812 * 2 1 4 4 C 1.52999 * 109.47114 * 239.99813 * 2 1 3 5 5 C 1.52997 * 109.47080 * 174.99701 * 4 2 1 6 6 H 1.09005 * 109.47604 * 305.00149 * 5 4 2 7 7 C 1.53000 * 109.47147 * 184.99925 * 5 4 2 8 8 N 1.46498 * 109.47002 * 65.00543 * 5 4 2 9 9 C 1.34785 * 119.99866 * 205.00367 * 8 5 4 10 10 O 1.21280 * 119.99803 * 359.97438 * 9 8 5 11 11 C 1.50700 * 119.99773 * 179.97438 * 9 8 5 12 12 S 1.81001 * 109.46744 * 179.97438 * 11 9 8 13 13 C 1.76206 * 99.99763 * 179.97438 * 12 11 9 14 14 H 1.07999 * 119.99992 * 0.02562 * 13 12 11 15 15 C 1.38796 * 119.99717 * 180.02562 * 13 12 11 16 16 N 1.31626 * 120.00508 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99770 * 180.02562 * 15 13 12 18 18 H 1.48507 * 109.46942 * 90.00279 * 17 15 13 19 19 H 1.48503 * 109.47324 * 210.00049 * 17 15 13 20 20 H 1.48502 * 109.47370 * 330.00233 * 17 15 13 21 21 N 1.46498 * 109.47036 * 120.00065 * 2 1 3 22 22 C 1.38539 * 119.99613 * 274.72161 * 21 2 1 23 23 N 1.32451 * 119.19334 * 0.02562 * 22 21 2 24 24 C 1.32299 * 120.76623 * 179.75904 * 23 22 21 25 25 C 1.38775 * 119.17031 * 0.50314 * 24 23 22 26 26 F 1.35100 * 120.74954 * 179.72752 * 25 24 23 27 27 C 1.38782 * 118.50906 * 359.75176 * 25 24 23 28 28 N 1.32299 * 119.16791 * 359.97438 * 27 25 24 29 29 H 1.08997 * 109.47293 * 300.00104 * 1 2 3 30 30 H 1.09003 * 109.47189 * 60.00254 * 1 2 3 31 31 H 1.09009 * 109.47238 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47492 * 295.00122 * 4 2 1 33 33 H 1.09007 * 109.47243 * 54.99904 * 4 2 1 34 34 H 1.09003 * 109.47231 * 60.00586 * 7 5 4 35 35 H 1.09008 * 109.47294 * 180.02562 * 7 5 4 36 36 H 1.08992 * 109.47249 * 300.00441 * 7 5 4 37 37 H 0.96994 * 120.00184 * 24.99578 * 8 5 4 38 38 H 1.08994 * 109.47089 * 299.99684 * 11 9 8 39 39 H 1.09001 * 109.47188 * 59.99804 * 11 9 8 40 40 H 0.97000 * 120.00406 * 179.97438 * 16 15 13 41 41 H 0.97001 * 120.00384 * 95.00578 * 21 2 1 42 42 H 1.08003 * 120.41120 * 180.23065 * 24 23 22 43 43 H 1.07998 * 120.41747 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5647 -0.6133 -1.3137 6 1 3.8570 0.4359 -1.2678 7 6 4.0644 -1.2250 -2.6240 8 7 4.1536 -1.3342 -0.1825 9 6 5.3747 -0.9910 0.2733 10 8 5.9862 -0.0856 -0.2534 11 6 5.9802 -1.7322 1.4374 12 16 7.6123 -1.0430 1.8082 13 6 8.0742 -2.0649 3.1674 14 1 7.4028 -2.8355 3.5162 15 6 9.3010 -1.8794 3.7896 16 7 10.1191 -0.9398 3.3648 17 14 9.7910 -2.9631 5.2300 18 1 10.5080 -4.1620 4.7260 19 1 10.6811 -2.2012 6.1425 20 1 8.5735 -3.3878 5.9667 21 7 2.0183 -0.6906 1.1962 22 6 2.1560 0.0020 2.3881 23 7 1.8411 1.2879 2.4282 24 6 1.9562 1.9781 3.5509 25 6 2.4231 1.3408 4.6919 26 9 2.5583 2.0163 5.8540 27 6 2.7485 -0.0059 4.6122 28 7 2.6040 -0.6370 3.4584 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.7516 -1.7715 -1.2056 33 1 1.6053 -0.2618 -2.1370 34 1 3.6263 -0.6887 -3.4658 35 1 5.1508 -1.1485 -2.6698 36 1 3.7722 -2.2741 -2.6699 37 1 3.6647 -2.0584 0.2386 38 1 5.3349 -1.6283 2.3096 39 1 6.0809 -2.7874 1.1835 40 1 10.9762 -0.8099 3.7999 41 1 2.2491 -1.6318 1.1526 42 1 1.6943 3.0256 3.5781 43 1 3.1150 -0.5323 5.4811 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089243191.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:53:21 Heat of formation + Delta-G solvation = -24.853413 kcal Electronic energy + Delta-G solvation = -27870.727189 eV Core-core repulsion = 23799.294855 eV Total energy + Delta-G solvation = -4071.432334 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.127 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -48.88533 -41.05030 -39.59705 -37.65229 -35.01749 -33.90768 -32.66097 -32.40364 -31.13865 -29.26724 -28.44839 -27.04831 -25.45648 -25.11562 -23.57825 -21.95127 -21.29954 -20.29773 -18.54970 -18.09363 -17.77335 -17.44310 -16.48573 -16.22826 -16.02886 -15.63211 -15.03316 -14.90539 -14.78239 -14.60047 -14.26841 -14.02104 -13.91372 -13.70913 -13.16799 -13.13650 -12.89956 -12.70258 -12.65567 -12.37018 -12.31331 -11.93543 -11.82272 -11.61555 -11.12583 -11.05511 -11.04558 -10.99281 -10.96201 -10.73718 -10.34011 -9.78886 -9.34674 -9.23435 -9.04728 -8.89020 -8.20635 -8.09968 -6.46954 -6.19302 -3.89306 0.89040 0.91301 2.59371 3.07406 3.14532 3.23666 3.29427 3.34011 3.65948 3.74405 3.92162 3.96168 4.22724 4.27424 4.48546 4.59226 4.73806 4.76477 4.87356 5.09590 5.14772 5.16059 5.22919 5.29281 5.37536 5.43558 5.50214 5.54268 5.61550 5.68954 5.71938 5.93710 5.93882 6.02189 6.17724 6.18929 6.20960 6.55516 6.67792 6.82556 7.20993 7.62113 7.70198 8.09073 8.37969 8.65353 9.26160 10.88184 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.008756 B = 0.004159 C = 0.003042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3197.001733 B = 6729.968807 C = 9202.817581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.157 3.843 3 H 0.095 0.905 4 C -0.136 4.136 5 C 0.143 3.857 6 H 0.089 0.911 7 C -0.163 4.163 8 N -0.729 5.729 9 C 0.535 3.465 10 O -0.518 6.518 11 C -0.152 4.152 12 S -0.061 6.061 13 C -0.533 4.533 14 H 0.072 0.928 15 C 0.074 3.926 16 N -0.868 5.868 17 Si 0.917 3.083 18 H -0.277 1.277 19 H -0.282 1.282 20 H -0.272 1.272 21 N -0.684 5.684 22 C 0.561 3.439 23 N -0.543 5.543 24 C 0.171 3.829 25 C -0.074 4.074 26 F -0.128 7.128 27 C 0.180 3.820 28 N -0.542 5.542 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.055 0.945 32 H 0.074 0.926 33 H 0.097 0.903 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.055 0.945 37 H 0.390 0.610 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.268 0.732 41 H 0.409 0.591 42 H 0.176 0.824 43 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.041 0.879 -5.608 23.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.052 3.948 3 H 0.113 0.887 4 C -0.175 4.175 5 C 0.038 3.962 6 H 0.107 0.893 7 C -0.222 4.222 8 N -0.385 5.385 9 C 0.321 3.679 10 O -0.392 6.392 11 C -0.303 4.303 12 S 0.165 5.835 13 C -0.681 4.681 14 H 0.090 0.910 15 C -0.135 4.135 16 N -0.504 5.504 17 Si 0.743 3.257 18 H -0.203 1.203 19 H -0.208 1.208 20 H -0.197 1.197 21 N -0.322 5.322 22 C 0.205 3.795 23 N -0.265 5.265 24 C 0.002 3.998 25 C -0.102 4.102 26 F -0.107 7.107 27 C 0.011 3.989 28 N -0.263 5.263 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.074 0.926 32 H 0.093 0.907 33 H 0.115 0.885 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.074 0.926 37 H 0.225 0.775 38 H 0.108 0.892 39 H 0.105 0.895 40 H 0.078 0.922 41 H 0.247 0.753 42 H 0.193 0.807 43 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -22.007 2.091 -7.511 23.348 hybrid contribution -0.301 -1.911 2.800 3.404 sum -22.308 0.180 -4.711 22.801 Atomic orbital electron populations 1.22200 0.95241 1.02003 1.02585 1.21003 0.93605 0.97761 0.82423 0.88683 1.22282 0.95218 1.01848 0.98133 1.20890 0.91180 0.98016 0.86088 0.89338 1.22183 1.02771 1.00721 0.96512 1.46172 1.19153 1.38250 1.34928 1.20274 0.80398 0.83363 0.83840 1.90692 1.60426 1.29750 1.58363 1.23521 1.05468 1.03051 0.98269 1.85366 1.08947 1.47213 1.41934 1.22855 1.05865 1.21174 1.18196 0.90991 1.24974 0.95345 0.95665 0.97532 1.70017 1.09347 1.30647 1.40379 0.86193 0.78536 0.79876 0.81057 1.20292 1.20765 1.19658 1.44317 1.70261 1.12191 1.05448 1.19342 0.87815 0.85555 0.86796 1.67924 1.23777 1.07088 1.27746 1.23057 0.90627 1.00365 0.85734 1.19112 1.12401 0.93637 0.85002 1.91510 1.94359 1.79565 1.45303 1.23127 0.90267 0.89943 0.95598 1.67945 1.19985 1.39484 0.98905 0.92038 0.91501 0.92637 0.90703 0.88488 0.91900 0.91619 0.92627 0.77522 0.89214 0.89520 0.92238 0.75256 0.80707 0.80418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.11 9.50 37.16 0.35 -0.76 16 2 C 0.16 1.31 2.57 -67.93 -0.17 1.13 16 3 H 0.10 0.99 7.50 -51.93 -0.39 0.60 16 4 C -0.14 -0.92 4.43 -26.73 -0.12 -1.04 16 5 C 0.14 1.52 2.57 -67.93 -0.17 1.34 16 6 H 0.09 1.18 7.58 -51.93 -0.39 0.78 16 7 C -0.16 -1.65 9.48 37.16 0.35 -1.29 16 8 N -0.73 -9.28 3.80 -53.80 -0.20 -9.49 16 9 C 0.54 10.00 7.81 -10.98 -0.09 9.91 16 10 O -0.52 -11.81 15.52 5.56 0.09 -11.72 16 11 C -0.15 -3.16 6.16 36.01 0.22 -2.94 16 12 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 13 C -0.53 -15.36 9.50 30.94 0.29 -15.06 16 14 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 15 C 0.07 2.13 5.49 -17.43 -0.10 2.04 16 16 N -0.87 -26.47 13.22 55.49 0.73 -25.73 16 17 Si 0.92 21.63 29.55 -169.99 -5.02 16.61 16 18 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 20 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 21 N -0.68 -6.91 3.95 -55.78 -0.22 -7.13 16 22 C 0.56 7.23 8.41 -322.71 -2.71 4.51 16 23 N -0.54 -6.83 9.20 -13.86 -0.13 -6.95 16 24 C 0.17 1.95 11.29 -17.15 -0.19 1.75 16 25 C -0.07 -0.90 7.38 -39.18 -0.29 -1.19 16 26 F -0.13 -1.58 17.30 2.25 0.04 -1.54 16 27 C 0.18 2.28 11.29 -17.15 -0.19 2.08 16 28 N -0.54 -7.40 10.46 -13.86 -0.14 -7.54 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.05 0.35 8.14 -51.92 -0.42 -0.07 16 32 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.87 8.14 -51.92 -0.42 0.45 16 36 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.39 3.99 6.51 -40.82 -0.27 3.73 16 38 H 0.09 1.81 8.14 -51.92 -0.42 1.39 16 39 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 40 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 41 H 0.41 3.71 6.62 -40.82 -0.27 3.44 16 42 H 0.18 1.42 8.06 -52.48 -0.42 1.00 16 43 H 0.18 1.85 8.06 -52.49 -0.42 1.43 16 LS Contribution 382.64 15.07 5.77 5.77 Total: -1.00 -35.99 382.64 -10.06 -46.05 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -5.94 Total: 5.09 kcal Atomic # 6 Polarization: 3.31 SS G_CDS: -2.82 Total: 0.49 kcal Atomic # 7 Polarization: -56.88 SS G_CDS: 0.04 Total: -56.84 kcal Atomic # 8 Polarization: -11.81 SS G_CDS: 0.09 Total: -11.72 kcal Atomic # 9 Polarization: -1.58 SS G_CDS: 0.04 Total: -1.54 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.99 -10.06 -46.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089243191.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.199 kcal (2) G-P(sol) polarization free energy of solvation -35.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds