Wall clock time and date at job start Wed Apr 1 2020 02:53:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08992 * 109.47384 * 2 1 4 4 C 1.53001 * 109.46678 * 240.00268 * 2 1 3 5 5 C 1.52997 * 109.47019 * 175.00209 * 4 2 1 6 6 H 1.08999 * 109.47004 * 304.99677 * 5 4 2 7 7 C 1.52999 * 109.47446 * 184.99942 * 5 4 2 8 8 N 1.46500 * 109.47420 * 64.99694 * 5 4 2 9 9 C 1.38539 * 120.00443 * 205.00066 * 8 5 4 10 10 N 1.32461 * 119.18573 * 0.27515 * 9 8 5 11 11 C 1.32291 * 120.76515 * 180.24317 * 10 9 8 12 12 C 1.38778 * 119.16739 * 359.48591 * 11 10 9 13 13 F 1.35102 * 120.75009 * 180.23310 * 12 11 10 14 14 C 1.38784 * 118.51208 * 0.25667 * 12 11 10 15 15 N 1.32302 * 119.16753 * 359.97438 * 14 12 11 16 16 N 1.46500 * 109.47220 * 120.00218 * 2 1 3 17 17 C 1.34775 * 120.00010 * 274.99776 * 16 2 1 18 18 O 1.21277 * 119.99756 * 0.02562 * 17 16 2 19 19 C 1.50695 * 119.99796 * 179.97438 * 17 16 2 20 20 S 1.81002 * 109.46838 * 180.02562 * 19 17 16 21 21 C 1.76204 * 99.99947 * 179.97438 * 20 19 17 22 22 H 1.08005 * 119.99937 * 0.02562 * 21 20 19 23 23 C 1.38791 * 120.00083 * 179.97438 * 21 20 19 24 24 N 1.31627 * 120.00114 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 120.00188 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.46913 * 0.02562 * 25 23 21 27 27 H 1.48493 * 109.47331 * 120.00172 * 25 23 21 28 28 H 1.48500 * 109.47290 * 240.00035 * 25 23 21 29 29 H 1.09000 * 109.46924 * 299.99646 * 1 2 3 30 30 H 1.08994 * 109.47103 * 60.00103 * 1 2 3 31 31 H 1.09005 * 109.47173 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47455 * 54.99847 * 4 2 1 33 33 H 1.09004 * 109.47157 * 294.99752 * 4 2 1 34 34 H 1.09004 * 109.47225 * 299.99728 * 7 5 4 35 35 H 1.09001 * 109.47369 * 59.99291 * 7 5 4 36 36 H 1.08992 * 109.47712 * 180.02562 * 7 5 4 37 37 H 0.97007 * 119.99873 * 25.00444 * 8 5 4 38 38 H 1.08002 * 120.41960 * 179.76818 * 11 10 9 39 39 H 1.07999 * 120.41813 * 180.02562 * 14 12 11 40 40 H 0.97009 * 119.99768 * 94.99841 * 16 2 1 41 41 H 1.09001 * 109.47309 * 300.00046 * 19 17 16 42 42 H 1.09003 * 109.47361 * 59.99835 * 19 17 16 43 43 H 0.97002 * 120.00388 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.6133 -1.3138 6 1 3.8570 0.4357 -1.2679 7 6 4.0644 -1.2250 -2.6242 8 7 4.1537 -1.3343 -0.1826 9 6 5.4089 -0.9817 0.2859 10 7 6.0600 0.0134 -0.2975 11 6 7.2623 0.3731 0.1212 12 6 7.8347 -0.2994 1.1918 13 9 9.0588 0.0445 1.6487 14 6 7.1219 -1.3334 1.7823 15 7 5.9257 -1.6440 1.3098 16 7 2.0184 -0.6906 1.1961 17 6 2.1472 -0.0183 2.3571 18 8 1.8584 1.1583 2.4117 19 6 2.6490 -0.7290 3.5876 20 16 2.7094 0.4339 4.9733 21 6 3.3113 -0.6317 6.2410 22 1 3.5208 -1.6681 6.0209 23 6 3.5171 -0.1390 7.5221 24 7 3.2623 1.1243 7.7902 25 14 4.1559 -1.2685 8.8658 26 1 4.3624 -2.6304 8.3110 27 1 5.4458 -0.7439 9.3818 28 1 3.1679 -1.3289 9.9728 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6054 -0.2617 -2.1370 33 1 1.7516 -1.7715 -1.2057 34 1 3.7722 -2.2741 -2.6701 35 1 3.6263 -0.6887 -3.4659 36 1 5.1507 -1.1486 -2.6700 37 1 3.6647 -2.0586 0.2385 38 1 7.7897 1.1828 -0.3609 39 1 7.5379 -1.8771 2.6176 40 1 2.2491 -1.6319 1.1525 41 1 1.9761 -1.5507 3.8324 42 1 3.6481 -1.1216 3.3984 43 1 3.4058 1.4686 8.6856 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089243192.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:53:24 Heat of formation + Delta-G solvation = -24.880241 kcal Electronic energy + Delta-G solvation = -27864.137245 eV Core-core repulsion = 23792.703748 eV Total energy + Delta-G solvation = -4071.433497 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.127 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -48.88701 -41.05203 -39.59749 -37.65305 -35.01795 -33.91050 -32.66107 -32.40481 -31.13894 -29.26828 -28.44865 -27.04921 -25.45886 -25.11745 -23.58029 -21.95206 -21.30013 -20.29768 -18.55105 -18.09488 -17.77455 -17.44498 -16.48620 -16.22906 -16.03071 -15.63286 -15.03445 -14.90606 -14.78461 -14.60210 -14.27029 -14.02284 -13.91521 -13.70920 -13.16744 -13.13877 -12.90113 -12.70395 -12.65774 -12.37042 -12.31420 -11.93523 -11.82388 -11.61632 -11.12805 -11.06056 -11.04864 -10.98869 -10.96262 -10.73282 -10.34153 -9.77986 -9.34655 -9.23647 -9.05613 -8.89009 -8.20228 -8.10084 -6.46996 -6.19569 -3.89453 0.88884 0.91044 2.59236 3.07427 3.14592 3.22771 3.29689 3.34709 3.65730 3.74438 3.91922 3.95978 4.22481 4.27369 4.48324 4.59162 4.73600 4.76300 4.87286 5.09541 5.14700 5.15891 5.22895 5.29220 5.37514 5.43430 5.50151 5.54112 5.61559 5.68954 5.71864 5.93624 5.93843 6.02230 6.17592 6.18840 6.20901 6.55316 6.67795 6.82429 7.20840 7.62323 7.70234 8.08895 8.38070 8.65412 9.26077 10.87974 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.008742 B = 0.004155 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3202.083888 B = 6737.080941 C = 9215.863958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.143 3.857 3 H 0.089 0.911 4 C -0.136 4.136 5 C 0.157 3.843 6 H 0.095 0.905 7 C -0.162 4.162 8 N -0.684 5.684 9 C 0.561 3.439 10 N -0.543 5.543 11 C 0.172 3.828 12 C -0.074 4.074 13 F -0.128 7.128 14 C 0.180 3.820 15 N -0.542 5.542 16 N -0.729 5.729 17 C 0.535 3.465 18 O -0.518 6.518 19 C -0.152 4.152 20 S -0.062 6.062 21 C -0.532 4.532 22 H 0.072 0.928 23 C 0.074 3.926 24 N -0.868 5.868 25 Si 0.917 3.083 26 H -0.271 1.271 27 H -0.280 1.280 28 H -0.280 1.280 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.055 0.945 32 H 0.097 0.903 33 H 0.074 0.926 34 H 0.054 0.946 35 H 0.066 0.934 36 H 0.061 0.939 37 H 0.409 0.591 38 H 0.176 0.824 39 H 0.179 0.821 40 H 0.390 0.610 41 H 0.087 0.913 42 H 0.089 0.911 43 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.086 -7.010 -22.496 23.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.038 3.962 3 H 0.107 0.893 4 C -0.175 4.175 5 C 0.052 3.948 6 H 0.113 0.887 7 C -0.220 4.220 8 N -0.322 5.322 9 C 0.205 3.795 10 N -0.265 5.265 11 C 0.002 3.998 12 C -0.102 4.102 13 F -0.107 7.107 14 C 0.011 3.989 15 N -0.263 5.263 16 N -0.385 5.385 17 C 0.321 3.679 18 O -0.392 6.392 19 C -0.303 4.303 20 S 0.165 5.835 21 C -0.680 4.680 22 H 0.091 0.909 23 C -0.135 4.135 24 N -0.504 5.504 25 Si 0.744 3.256 26 H -0.196 1.196 27 H -0.206 1.206 28 H -0.206 1.206 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.115 0.885 33 H 0.093 0.907 34 H 0.074 0.926 35 H 0.085 0.915 36 H 0.080 0.920 37 H 0.247 0.753 38 H 0.193 0.807 39 H 0.196 0.804 40 H 0.225 0.775 41 H 0.105 0.895 42 H 0.108 0.892 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.597 -5.039 -22.771 23.376 hybrid contribution 1.741 -2.519 1.484 3.403 sum 3.338 -7.558 -21.286 22.834 Atomic orbital electron populations 1.22185 0.95293 1.01987 1.02723 1.20890 0.93903 0.97770 0.83608 0.89337 1.22280 0.94316 1.02019 0.98858 1.21003 0.91615 0.97645 0.84526 0.88683 1.22201 1.02192 1.00923 0.96726 1.44319 1.13827 1.38677 1.35390 1.19343 0.87641 0.86286 0.86237 1.67926 1.08812 1.16734 1.33051 1.23056 0.89733 0.96108 0.90879 1.19114 0.85634 1.03439 1.01977 1.91511 1.39293 1.91655 1.88282 1.23127 0.88028 0.91612 0.96181 1.67944 1.12999 1.31736 1.13642 1.46172 1.69326 1.13343 1.09653 1.20267 0.76637 0.87199 0.83766 1.90691 1.48353 1.15765 1.84423 1.23520 1.03676 1.04704 0.98402 1.85369 1.86312 1.13042 0.98772 1.22896 1.50731 0.98123 0.96269 0.90939 1.24977 0.95137 0.95499 0.97932 1.70029 1.45763 1.13223 1.21368 0.86139 0.78535 0.80206 0.80768 1.19585 1.20573 1.20589 0.91615 0.91905 0.92626 0.88486 0.90704 0.92643 0.91497 0.92037 0.75254 0.80706 0.80419 0.77521 0.89514 0.89225 0.92295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.64 9.48 37.16 0.35 -1.29 16 2 C 0.14 1.52 2.57 -67.93 -0.17 1.34 16 3 H 0.09 1.18 7.58 -51.93 -0.39 0.78 16 4 C -0.14 -0.92 4.43 -26.73 -0.12 -1.04 16 5 C 0.16 1.31 2.57 -67.93 -0.17 1.13 16 6 H 0.10 0.99 7.50 -51.93 -0.39 0.60 16 7 C -0.16 -1.11 9.50 37.16 0.35 -0.76 16 8 N -0.68 -6.90 3.95 -55.78 -0.22 -7.12 16 9 C 0.56 7.22 8.41 -322.71 -2.71 4.50 16 10 N -0.54 -6.82 9.20 -13.87 -0.13 -6.94 16 11 C 0.17 1.94 11.29 -17.15 -0.19 1.75 16 12 C -0.07 -0.90 7.38 -39.18 -0.29 -1.19 16 13 F -0.13 -1.57 17.30 2.25 0.04 -1.54 16 14 C 0.18 2.27 11.29 -17.15 -0.19 2.07 16 15 N -0.54 -7.38 10.46 -13.86 -0.14 -7.52 16 16 N -0.73 -9.28 3.80 -53.81 -0.20 -9.48 16 17 C 0.54 10.00 7.81 -10.99 -0.09 9.91 16 18 O -0.52 -11.81 15.52 5.56 0.09 -11.72 16 19 C -0.15 -3.16 6.16 36.00 0.22 -2.94 16 20 S -0.06 -1.70 20.57 -107.50 -2.21 -3.91 16 21 C -0.53 -15.34 9.50 30.94 0.29 -15.04 16 22 H 0.07 2.00 7.80 -52.48 -0.41 1.59 16 23 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 24 N -0.87 -26.46 13.22 55.49 0.73 -25.72 16 25 Si 0.92 21.64 29.55 -169.99 -5.02 16.61 16 26 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 27 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 28 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 29 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.41 3.70 6.62 -40.82 -0.27 3.43 16 38 H 0.18 1.42 8.06 -52.49 -0.42 1.00 16 39 H 0.18 1.84 8.06 -52.49 -0.42 1.41 16 40 H 0.39 3.99 6.51 -40.82 -0.27 3.73 16 41 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 42 H 0.09 1.81 8.14 -51.92 -0.42 1.39 16 43 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 382.64 15.07 5.77 5.77 Total: -1.00 -36.02 382.64 -10.06 -46.08 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -5.94 Total: 5.02 kcal Atomic # 6 Polarization: 3.29 SS G_CDS: -2.82 Total: 0.48 kcal Atomic # 7 Polarization: -56.83 SS G_CDS: 0.04 Total: -56.80 kcal Atomic # 8 Polarization: -11.81 SS G_CDS: 0.09 Total: -11.72 kcal Atomic # 9 Polarization: -1.57 SS G_CDS: 0.04 Total: -1.54 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.91 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -36.02 -10.06 -46.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089243192.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.202 kcal (2) G-P(sol) polarization free energy of solvation -36.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds