Wall clock time and date at job start Wed Apr 1 2020 02:52:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46979 * 2 1 4 4 C 1.52999 * 109.47284 * 240.00442 * 2 1 3 5 5 C 1.52999 * 109.47283 * 175.00170 * 4 2 1 6 6 H 1.09000 * 109.47257 * 54.99488 * 5 4 2 7 7 C 1.53001 * 109.47151 * 174.99750 * 5 4 2 8 8 N 1.46495 * 109.46896 * 294.99496 * 5 4 2 9 9 C 1.39159 * 119.99961 * 155.00228 * 8 5 4 10 10 C 1.39208 * 120.05980 * 359.97438 * 9 8 5 11 11 N 1.32007 * 119.92786 * 180.02562 * 10 9 8 12 12 C 1.32404 * 120.06068 * 359.97438 * 11 10 9 13 13 F 1.35095 * 119.93675 * 180.02562 * 12 11 10 14 14 C 1.38465 * 120.11974 * 0.02562 * 12 11 10 15 15 N 1.32220 * 120.07003 * 359.71779 * 14 12 11 16 16 N 1.46499 * 109.47288 * 119.99801 * 2 1 3 17 17 C 1.34777 * 120.00199 * 275.00460 * 16 2 1 18 18 O 1.21283 * 119.99750 * 359.97438 * 17 16 2 19 19 C 1.50702 * 119.99928 * 180.27479 * 17 16 2 20 20 S 1.80999 * 109.46903 * 179.72354 * 19 17 16 21 21 C 1.76200 * 99.99730 * 179.97438 * 20 19 17 22 22 H 1.08001 * 120.00351 * 0.02562 * 21 20 19 23 23 C 1.38796 * 120.00095 * 179.97438 * 21 20 19 24 24 N 1.31634 * 119.99941 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00384 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.46990 * 359.97438 * 25 23 21 27 27 H 1.48494 * 109.47522 * 119.99735 * 25 23 21 28 28 H 1.48500 * 109.47073 * 240.00101 * 25 23 21 29 29 H 1.09007 * 109.47320 * 60.00143 * 1 2 3 30 30 H 1.08993 * 109.47268 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47495 * 300.00247 * 1 2 3 32 32 H 1.09006 * 109.46798 * 294.99777 * 4 2 1 33 33 H 1.08995 * 109.47322 * 54.99237 * 4 2 1 34 34 H 1.09000 * 109.47254 * 59.99736 * 7 5 4 35 35 H 1.08997 * 109.47396 * 180.02562 * 7 5 4 36 36 H 1.09003 * 109.46766 * 299.99808 * 7 5 4 37 37 H 0.97001 * 120.00453 * 334.99827 * 8 5 4 38 38 H 1.07995 * 120.03298 * 359.97438 * 10 9 8 39 39 H 1.07992 * 119.96691 * 179.97438 * 14 12 11 40 40 H 0.97000 * 119.99484 * 94.99557 * 16 2 1 41 41 H 1.09004 * 109.46965 * 299.72211 * 19 17 16 42 42 H 1.08994 * 109.46990 * 59.72065 * 19 17 16 43 43 H 0.97002 * 120.00288 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5648 -0.6132 -1.3137 6 1 3.9954 -0.9922 -0.3868 7 6 4.0852 -1.4382 -2.4925 8 7 3.9479 0.7894 -1.4924 9 6 5.2006 1.2274 -1.0735 10 6 6.0905 0.3338 -0.4840 11 7 7.2779 0.7522 -0.0871 12 6 7.6229 2.0201 -0.2498 13 9 8.8390 2.4454 0.1568 14 6 6.7395 2.9108 -0.8359 15 7 5.5508 2.4960 -1.2399 16 7 2.0183 -0.6906 1.1962 17 6 2.1470 -0.0182 2.3572 18 8 1.8589 1.1586 2.4115 19 6 2.6553 -0.7271 3.5861 20 16 2.7223 0.4375 4.9700 21 6 3.3309 -0.6263 6.2359 22 1 3.5396 -1.6629 6.0161 23 6 3.5431 -0.1319 7.5153 24 7 3.2902 1.1319 7.7829 25 14 4.1890 -1.2595 8.8572 26 1 4.3919 -2.6223 8.3034 27 1 5.4813 -0.7340 9.3659 28 1 3.2066 -1.3188 9.9693 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.7516 -1.7715 -1.2056 33 1 1.6053 -0.2617 -2.1369 34 1 3.6546 -1.0592 -3.4194 35 1 5.1715 -1.3617 -2.5381 36 1 3.8001 -2.4818 -2.3595 37 1 3.3284 1.4129 -1.9028 38 1 5.8093 -0.7003 -0.3507 39 1 7.0233 3.9445 -0.9670 40 1 2.2490 -1.6317 1.1526 41 1 1.9840 -1.5491 3.8351 42 1 3.6536 -1.1193 3.3925 43 1 3.4381 1.4774 8.6771 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089244191.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:48 Heat of formation + Delta-G solvation = -32.201040 kcal Electronic energy + Delta-G solvation = -27235.605020 eV Core-core repulsion = 23163.854069 eV Total energy + Delta-G solvation = -4071.750951 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.127 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -48.99474 -41.23866 -39.64457 -37.92146 -35.42015 -34.45482 -32.43828 -32.38588 -31.20933 -29.14487 -28.59610 -27.17945 -25.48780 -25.32390 -23.79403 -22.10733 -21.30727 -20.36755 -18.71099 -18.17157 -17.84970 -17.75145 -16.44681 -16.35704 -16.23972 -15.79709 -15.28932 -14.93233 -14.80505 -14.64973 -14.33817 -14.18458 -13.99462 -13.80852 -13.66140 -13.24872 -13.03112 -12.85395 -12.69046 -12.46347 -12.35237 -12.00386 -11.85263 -11.82757 -11.52779 -11.32353 -11.07144 -11.05834 -11.02088 -10.75525 -10.42821 -9.80975 -9.45990 -9.41979 -9.08177 -8.96977 -8.24142 -8.08198 -6.50530 -6.21941 -3.92602 0.59129 0.92504 2.55565 3.00635 3.06202 3.21884 3.28277 3.32590 3.35826 3.43282 3.67951 4.03576 4.05736 4.19936 4.20678 4.38284 4.51712 4.68720 4.89458 4.93318 4.98189 5.11637 5.13602 5.14807 5.16825 5.22980 5.34149 5.37014 5.47800 5.54109 5.64068 5.72657 5.85743 5.95385 6.05326 6.10601 6.13082 6.35387 6.60730 7.02240 7.09319 7.56108 7.59542 7.65244 8.35097 8.58298 9.23673 10.85569 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.008629 B = 0.003394 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3243.952990 B = 8248.210435 C =10453.477070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.141 3.859 3 H 0.090 0.910 4 C -0.134 4.134 5 C 0.145 3.855 6 H 0.088 0.912 7 C -0.171 4.171 8 N -0.702 5.702 9 C 0.354 3.646 10 C 0.031 3.969 11 N -0.428 5.428 12 C 0.185 3.815 13 F -0.109 7.109 14 C 0.098 3.902 15 N -0.479 5.479 16 N -0.735 5.735 17 C 0.533 3.467 18 O -0.514 6.514 19 C -0.154 4.154 20 S -0.060 6.060 21 C -0.535 4.535 22 H 0.073 0.927 23 C 0.074 3.926 24 N -0.867 5.867 25 Si 0.918 3.082 26 H -0.271 1.271 27 H -0.279 1.279 28 H -0.280 1.280 29 H 0.061 0.939 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.071 0.929 37 H 0.408 0.592 38 H 0.172 0.828 39 H 0.181 0.819 40 H 0.396 0.604 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.311 -5.268 -24.787 25.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.036 3.964 3 H 0.108 0.892 4 C -0.172 4.172 5 C 0.039 3.961 6 H 0.106 0.894 7 C -0.230 4.230 8 N -0.335 5.335 9 C 0.115 3.885 10 C -0.139 4.139 11 N -0.146 5.146 12 C 0.028 3.972 13 F -0.089 7.089 14 C -0.065 4.065 15 N -0.201 5.201 16 N -0.390 5.390 17 C 0.319 3.681 18 O -0.388 6.388 19 C -0.305 4.305 20 S 0.166 5.834 21 C -0.683 4.683 22 H 0.091 0.909 23 C -0.135 4.135 24 N -0.503 5.503 25 Si 0.745 3.255 26 H -0.196 1.196 27 H -0.205 1.205 28 H -0.206 1.206 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.108 0.892 33 H 0.105 0.895 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.090 0.910 37 H 0.245 0.755 38 H 0.189 0.811 39 H 0.198 0.802 40 H 0.230 0.770 41 H 0.107 0.893 42 H 0.106 0.894 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.151 -3.303 -24.517 24.739 hybrid contribution 0.859 -2.215 0.841 2.520 sum 0.708 -5.517 -23.676 24.321 Atomic orbital electron populations 1.22186 0.95232 1.02092 1.02756 1.20890 0.94042 0.97896 0.83589 0.89189 1.22220 0.93611 1.02737 0.98632 1.21154 0.95418 0.80234 0.99252 0.89380 1.22328 1.01949 1.00202 0.98487 1.44537 1.13022 1.10471 1.65462 1.19332 0.88014 0.89856 0.91324 1.22905 0.88722 1.01240 1.00990 1.67562 1.17928 1.15349 1.13772 1.18773 0.84371 0.90654 1.03405 1.91621 1.40131 1.88513 1.88617 1.23264 0.88065 1.00987 0.94146 1.68003 1.16950 1.14238 1.20868 1.46103 1.69627 1.13728 1.09571 1.20308 0.76825 0.87228 0.83755 1.90707 1.48104 1.15717 1.84282 1.23534 1.03510 1.04907 0.98519 1.85415 1.86080 1.12868 0.99017 1.22899 1.50814 0.98136 0.96483 0.90898 1.24989 0.95068 0.95520 0.97962 1.70028 1.45589 1.13156 1.21501 0.86123 0.78574 0.80141 0.80710 1.19599 1.20525 1.20557 0.91960 0.92498 0.91570 0.89201 0.89515 0.91840 0.92073 0.90961 0.75493 0.81067 0.80237 0.77043 0.89275 0.89389 0.92231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.52 9.48 37.16 0.35 -1.17 16 2 C 0.14 1.32 2.52 -67.93 -0.17 1.15 16 3 H 0.09 1.10 7.05 -51.93 -0.37 0.73 16 4 C -0.13 -0.69 4.29 -26.73 -0.11 -0.80 16 5 C 0.14 0.87 2.21 -67.93 -0.15 0.72 16 6 H 0.09 0.61 5.95 -51.93 -0.31 0.30 16 7 C -0.17 -0.78 9.42 37.16 0.35 -0.43 16 8 N -0.70 -5.73 4.62 -53.81 -0.25 -5.98 16 9 C 0.35 3.95 7.65 -154.62 -1.18 2.77 16 10 C 0.03 0.36 10.02 -17.12 -0.17 0.19 16 11 N -0.43 -6.00 10.50 -13.25 -0.14 -6.14 16 12 C 0.18 2.45 8.43 -17.22 -0.15 2.30 16 13 F -0.11 -1.46 17.29 2.25 0.04 -1.42 16 14 C 0.10 1.11 11.20 -17.30 -0.19 0.92 16 15 N -0.48 -5.79 10.53 -12.17 -0.13 -5.92 16 16 N -0.74 -8.38 4.45 -53.81 -0.24 -8.62 16 17 C 0.53 9.39 7.81 -10.98 -0.09 9.31 16 18 O -0.51 -11.31 15.52 5.55 0.09 -11.23 16 19 C -0.15 -3.03 6.16 36.01 0.22 -2.81 16 20 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 21 C -0.54 -15.30 9.50 30.94 0.29 -15.00 16 22 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 23 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 24 N -0.87 -26.35 13.22 55.49 0.73 -25.62 16 25 Si 0.92 21.56 29.55 -169.99 -5.02 16.54 16 26 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 27 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 28 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 34 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.06 0.34 7.70 -51.93 -0.40 -0.06 16 36 H 0.07 0.24 8.14 -51.93 -0.42 -0.19 16 37 H 0.41 3.07 8.73 -40.82 -0.36 2.71 16 38 H 0.17 1.56 6.10 -52.49 -0.32 1.24 16 39 H 0.18 1.43 8.06 -52.49 -0.42 1.01 16 40 H 0.40 3.30 8.60 -40.82 -0.35 2.95 16 41 H 0.09 1.61 8.14 -51.91 -0.42 1.19 16 42 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 43 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 383.35 15.07 5.78 5.78 Total: -1.00 -36.88 383.35 -8.32 -45.20 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -5.87 Total: 2.11 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: -1.09 Total: -0.84 kcal Atomic # 7 Polarization: -52.26 SS G_CDS: -0.02 Total: -52.28 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: 0.09 Total: -11.23 kcal Atomic # 9 Polarization: -1.46 SS G_CDS: 0.04 Total: -1.42 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -36.88 -8.32 -45.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089244191.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.001 kcal (2) G-P(sol) polarization free energy of solvation -36.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds