Wall clock time and date at job start Wed Apr 1 2020 02:52:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46932 * 2 1 4 4 C 1.52997 * 109.46921 * 120.00215 * 2 1 3 5 5 C 1.53000 * 109.46964 * 184.99694 * 4 2 1 6 6 H 1.08996 * 109.47680 * 305.00516 * 5 4 2 7 7 C 1.52997 * 109.47243 * 184.99655 * 5 4 2 8 8 N 1.46510 * 109.46917 * 65.00187 * 5 4 2 9 9 C 1.39150 * 119.99706 * 205.00226 * 8 5 4 10 10 C 1.39203 * 120.06590 * 359.97438 * 9 8 5 11 11 N 1.32014 * 119.93259 * 180.02562 * 10 9 8 12 12 C 1.32396 * 120.05471 * 0.02562 * 11 10 9 13 13 F 1.35098 * 119.93691 * 179.97438 * 12 11 10 14 14 C 1.38465 * 120.12671 * 0.02562 * 12 11 10 15 15 N 1.32213 * 120.06877 * 359.97438 * 14 12 11 16 16 N 1.46501 * 109.46919 * 240.00170 * 2 1 3 17 17 C 1.34776 * 120.00131 * 85.00247 * 16 2 1 18 18 O 1.21281 * 120.00069 * 359.97438 * 17 16 2 19 19 C 1.50705 * 120.00235 * 179.97438 * 17 16 2 20 20 S 1.80997 * 109.47080 * 179.97438 * 19 17 16 21 21 C 1.76202 * 99.99923 * 180.02562 * 20 19 17 22 22 H 1.08000 * 120.00040 * 359.97438 * 21 20 19 23 23 C 1.38802 * 120.00107 * 180.02562 * 21 20 19 24 24 N 1.31627 * 119.99917 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00146 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.46930 * 89.99501 * 25 23 21 27 27 H 1.48497 * 109.47384 * 210.00010 * 25 23 21 28 28 H 1.48508 * 109.46838 * 329.99970 * 25 23 21 29 29 H 1.09000 * 109.47153 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.47165 * 299.99896 * 1 2 3 31 31 H 1.09003 * 109.47192 * 59.99936 * 1 2 3 32 32 H 1.09004 * 109.47488 * 65.00479 * 4 2 1 33 33 H 1.08994 * 109.47267 * 304.99671 * 4 2 1 34 34 H 1.09001 * 109.47309 * 179.97438 * 7 5 4 35 35 H 1.08991 * 109.47522 * 300.00495 * 7 5 4 36 36 H 1.09001 * 109.46637 * 60.00569 * 7 5 4 37 37 H 0.96994 * 119.99700 * 24.99677 * 8 5 4 38 38 H 1.07997 * 120.03389 * 0.05234 * 10 9 8 39 39 H 1.07999 * 119.96939 * 179.97438 * 14 12 11 40 40 H 0.97001 * 120.00224 * 264.99847 * 16 2 1 41 41 H 1.09001 * 109.46743 * 299.99828 * 19 17 16 42 42 H 1.08996 * 109.47092 * 59.99650 * 19 17 16 43 43 H 0.96992 * 120.00400 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.6134 1.3136 6 1 3.9954 -0.9922 0.3868 7 6 4.0851 -1.4384 2.4924 8 7 3.9480 0.7894 1.4924 9 6 5.2006 1.2272 1.0735 10 6 6.0908 0.3335 0.4848 11 7 7.2787 0.7517 0.0887 12 6 7.6236 2.0195 0.2515 13 9 8.8400 2.4448 -0.1542 14 6 6.7403 2.9103 0.8378 15 7 5.5494 2.4968 1.2363 16 7 2.0183 -0.6906 -1.1962 17 6 2.1471 -0.0182 -2.3572 18 8 1.8582 1.1584 -2.4117 19 6 2.6499 -0.7285 -3.5876 20 16 2.7100 0.4344 -4.9732 21 6 3.3131 -0.6307 -6.2406 22 1 3.5233 -1.6670 -6.0205 23 6 3.5192 -0.1378 -7.5217 24 7 3.2635 1.1252 -7.7899 25 14 4.1593 -1.2669 -8.8652 26 1 3.0141 -1.9049 -9.5629 27 1 4.9542 -0.4764 -9.8390 28 1 5.0184 -2.3170 -8.2614 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 1.7517 -1.7716 1.2055 33 1 1.6054 -0.2618 2.1369 34 1 5.1715 -1.3619 2.5380 35 1 3.6546 -1.0595 3.4192 36 1 3.8001 -2.4820 2.3593 37 1 3.3284 1.4127 1.9028 38 1 5.8098 -0.7007 0.3518 39 1 7.0244 3.9438 0.9697 40 1 2.2490 -1.6318 -1.1527 41 1 3.6492 -1.1202 -3.3980 42 1 1.9777 -1.5507 -3.8326 43 1 3.4071 1.4696 -8.6852 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089244192.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:51 Heat of formation + Delta-G solvation = -32.162406 kcal Electronic energy + Delta-G solvation = -27231.857848 eV Core-core repulsion = 23160.108572 eV Total energy + Delta-G solvation = -4071.749276 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.127 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -48.99530 -41.23965 -39.64459 -37.92205 -35.42058 -34.45571 -32.43841 -32.38671 -31.20942 -29.14582 -28.59600 -27.17973 -25.48545 -25.32462 -23.79484 -22.10768 -21.30769 -20.36752 -18.71229 -18.17232 -17.84896 -17.75228 -16.44636 -16.35813 -16.23978 -15.79709 -15.28996 -14.93215 -14.80294 -14.64936 -14.33948 -14.18532 -13.99448 -13.80786 -13.66283 -13.24880 -13.03064 -12.85366 -12.68953 -12.46318 -12.35147 -12.00467 -11.85299 -11.82758 -11.52973 -11.32375 -11.06360 -11.06217 -11.02164 -10.75907 -10.42979 -9.81887 -9.46116 -9.41947 -9.07380 -8.96892 -8.24518 -8.08284 -6.50490 -6.21675 -3.92445 0.59020 0.92410 2.55485 3.00628 3.06255 3.22618 3.28047 3.32029 3.35696 3.43214 3.67929 4.03483 4.05677 4.20064 4.20711 4.38247 4.51665 4.68661 4.89393 4.93200 4.98162 5.11675 5.13677 5.14841 5.16719 5.22961 5.34146 5.37024 5.47770 5.54190 5.64136 5.72633 5.85766 5.95392 6.05217 6.10628 6.13151 6.35261 6.60743 7.02209 7.09197 7.56013 7.59333 7.65242 8.35016 8.58315 9.23754 10.85817 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.008643 B = 0.003385 C = 0.002674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3238.668332 B = 8269.741749 C =10469.862034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.141 3.859 3 H 0.090 0.910 4 C -0.134 4.134 5 C 0.145 3.855 6 H 0.088 0.912 7 C -0.171 4.171 8 N -0.702 5.702 9 C 0.354 3.646 10 C 0.031 3.969 11 N -0.428 5.428 12 C 0.185 3.815 13 F -0.109 7.109 14 C 0.098 3.902 15 N -0.479 5.479 16 N -0.735 5.735 17 C 0.533 3.467 18 O -0.514 6.514 19 C -0.154 4.154 20 S -0.060 6.060 21 C -0.536 4.536 22 H 0.072 0.928 23 C 0.074 3.926 24 N -0.868 5.868 25 Si 0.918 3.082 26 H -0.277 1.277 27 H -0.282 1.282 28 H -0.272 1.272 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.060 0.940 35 H 0.063 0.937 36 H 0.071 0.929 37 H 0.408 0.592 38 H 0.172 0.828 39 H 0.181 0.819 40 H 0.396 0.604 41 H 0.088 0.912 42 H 0.089 0.911 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.379 -5.247 24.807 25.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.036 3.964 3 H 0.108 0.892 4 C -0.172 4.172 5 C 0.039 3.961 6 H 0.106 0.894 7 C -0.230 4.230 8 N -0.335 5.335 9 C 0.115 3.885 10 C -0.139 4.139 11 N -0.146 5.146 12 C 0.028 3.972 13 F -0.089 7.089 14 C -0.065 4.065 15 N -0.201 5.201 16 N -0.390 5.390 17 C 0.319 3.681 18 O -0.388 6.388 19 C -0.305 4.305 20 S 0.167 5.833 21 C -0.684 4.684 22 H 0.090 0.910 23 C -0.135 4.135 24 N -0.503 5.503 25 Si 0.744 3.256 26 H -0.203 1.203 27 H -0.207 1.207 28 H -0.197 1.197 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.108 0.892 33 H 0.105 0.895 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.090 0.910 37 H 0.245 0.755 38 H 0.189 0.811 39 H 0.198 0.802 40 H 0.230 0.770 41 H 0.106 0.894 42 H 0.107 0.893 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.083 -3.276 24.530 24.748 hybrid contribution 0.853 -2.226 -0.838 2.526 sum 0.770 -5.502 23.692 24.335 Atomic orbital electron populations 1.22185 0.95229 1.02094 1.02757 1.20891 0.94046 0.97892 0.83585 0.89189 1.22220 0.93610 1.02737 0.98635 1.21157 0.95420 0.80230 0.99253 0.89381 1.22326 1.01950 1.00201 0.98486 1.44537 1.13037 1.10473 1.65442 1.19330 0.88022 0.89841 0.91334 1.22904 0.88715 1.01244 1.01003 1.67564 1.17919 1.15339 1.13787 1.18773 0.84370 0.90664 1.03397 1.91621 1.40109 1.88517 1.88638 1.23266 0.88024 1.00999 0.94176 1.68004 1.16917 1.14227 1.20904 1.46104 1.69623 1.13719 1.09587 1.20308 0.76810 0.87236 0.83764 1.90707 1.48037 1.15753 1.84313 1.23535 1.03545 1.04896 0.98502 1.85411 1.86281 1.12906 0.98744 1.22859 1.51064 0.98131 0.96355 0.90953 1.24985 0.95053 0.95514 0.97957 1.70011 1.45555 1.13216 1.21498 0.86177 0.78843 0.79990 0.80564 1.20261 1.20720 1.19657 0.92496 0.91960 0.91567 0.89198 0.89513 0.92071 0.91838 0.90961 0.75493 0.81069 0.80235 0.77043 0.89394 0.89275 0.92172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.52 9.48 37.16 0.35 -1.17 16 2 C 0.14 1.32 2.52 -67.93 -0.17 1.15 16 3 H 0.09 1.10 7.06 -51.93 -0.37 0.73 16 4 C -0.13 -0.69 4.29 -26.73 -0.11 -0.80 16 5 C 0.14 0.87 2.21 -67.93 -0.15 0.72 16 6 H 0.09 0.61 5.95 -51.93 -0.31 0.30 16 7 C -0.17 -0.78 9.42 37.16 0.35 -0.43 16 8 N -0.70 -5.73 4.62 -53.80 -0.25 -5.98 16 9 C 0.35 3.95 7.65 -154.62 -1.18 2.76 16 10 C 0.03 0.36 10.01 -17.12 -0.17 0.19 16 11 N -0.43 -6.00 10.50 -13.25 -0.14 -6.14 16 12 C 0.18 2.44 8.43 -17.22 -0.15 2.30 16 13 F -0.11 -1.46 17.29 2.25 0.04 -1.42 16 14 C 0.10 1.11 11.20 -17.30 -0.19 0.92 16 15 N -0.48 -5.79 10.53 -12.17 -0.13 -5.92 16 16 N -0.74 -8.38 4.45 -53.80 -0.24 -8.62 16 17 C 0.53 9.40 7.81 -10.98 -0.09 9.31 16 18 O -0.51 -11.32 15.52 5.56 0.09 -11.23 16 19 C -0.15 -3.04 6.16 36.01 0.22 -2.82 16 20 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 21 C -0.54 -15.32 9.50 30.94 0.29 -15.03 16 22 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 23 C 0.07 2.13 5.49 -17.43 -0.10 2.04 16 24 N -0.87 -26.36 13.22 55.49 0.73 -25.63 16 25 Si 0.92 21.55 29.55 -169.99 -5.02 16.53 16 26 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 27 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 28 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 34 H 0.06 0.34 7.69 -51.93 -0.40 -0.06 16 35 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.07 0.24 8.14 -51.93 -0.42 -0.19 16 37 H 0.41 3.06 8.73 -40.82 -0.36 2.71 16 38 H 0.17 1.56 6.10 -52.49 -0.32 1.24 16 39 H 0.18 1.43 8.06 -52.49 -0.42 1.00 16 40 H 0.40 3.30 8.60 -40.82 -0.35 2.95 16 41 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 42 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 43 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 383.34 15.07 5.78 5.78 Total: -1.00 -36.87 383.34 -8.32 -45.19 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -5.87 Total: 2.14 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: -1.09 Total: -0.86 kcal Atomic # 7 Polarization: -52.26 SS G_CDS: -0.02 Total: -52.28 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: 0.09 Total: -11.23 kcal Atomic # 9 Polarization: -1.46 SS G_CDS: 0.04 Total: -1.42 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -36.87 -8.32 -45.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089244192.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.027 kcal (2) G-P(sol) polarization free energy of solvation -36.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds