Wall clock time and date at job start Wed Apr 1 2020 02:52:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 109.46936 * 2 1 4 4 C 1.52997 * 109.47209 * 239.99819 * 2 1 3 5 5 C 1.52999 * 109.47080 * 175.00208 * 4 2 1 6 6 H 1.09004 * 109.47434 * 54.99895 * 5 4 2 7 7 C 1.52997 * 109.47114 * 174.99701 * 5 4 2 8 8 N 1.46498 * 109.46963 * 294.99494 * 5 4 2 9 9 C 1.38575 * 119.99537 * 154.72330 * 8 5 4 10 10 C 1.39462 * 120.51902 * 0.02562 * 9 8 5 11 11 C 1.38467 * 118.31185 * 179.80089 * 10 9 8 12 12 F 1.35102 * 120.43178 * 180.22304 * 11 10 9 13 13 N 1.32785 * 119.13986 * 0.47371 * 11 10 9 14 14 C 1.31766 * 120.96372 * 359.74551 * 13 11 10 15 15 N 1.31760 * 121.85868 * 0.02562 * 14 13 11 16 16 N 1.46495 * 109.46926 * 119.99527 * 2 1 3 17 17 C 1.34775 * 120.00457 * 275.00188 * 16 2 1 18 18 O 1.21285 * 119.99872 * 0.02562 * 17 16 2 19 19 C 1.50700 * 120.00479 * 179.97438 * 17 16 2 20 20 S 1.81004 * 109.47237 * 179.97438 * 19 17 16 21 21 C 1.76198 * 99.99873 * 179.97438 * 20 19 17 22 22 H 1.08002 * 120.00519 * 0.02562 * 21 20 19 23 23 C 1.38803 * 119.99991 * 180.02562 * 21 20 19 24 24 N 1.31623 * 120.00096 * 180.02562 * 23 21 20 25 25 Si 1.86801 * 119.99855 * 359.97438 * 23 21 20 26 26 H 1.48499 * 109.47140 * 90.00218 * 25 23 21 27 27 H 1.48494 * 109.47116 * 210.00221 * 25 23 21 28 28 H 1.48500 * 109.47264 * 330.00332 * 25 23 21 29 29 H 1.09000 * 109.46920 * 300.00659 * 1 2 3 30 30 H 1.08997 * 109.46639 * 60.00527 * 1 2 3 31 31 H 1.09002 * 109.46936 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47302 * 54.99671 * 4 2 1 33 33 H 1.09007 * 109.46917 * 295.00206 * 4 2 1 34 34 H 1.09003 * 109.47189 * 300.00067 * 7 5 4 35 35 H 1.09009 * 109.47238 * 59.99946 * 7 5 4 36 36 H 1.08997 * 109.47293 * 179.97438 * 7 5 4 37 37 H 0.97001 * 120.00384 * 335.00737 * 8 5 4 38 38 H 1.08001 * 120.84067 * 359.97438 * 10 9 8 39 39 H 1.07994 * 119.06947 * 180.02562 * 14 13 11 40 40 H 0.97009 * 120.00171 * 95.00238 * 16 2 1 41 41 H 1.09000 * 109.47236 * 300.00369 * 19 17 16 42 42 H 1.09001 * 109.46734 * 60.00173 * 19 17 16 43 43 H 0.97002 * 120.00595 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.6133 -1.3136 6 1 3.9955 -0.9923 -0.3867 7 6 4.0852 -1.4384 -2.4923 8 7 3.9480 0.7893 -1.4925 9 6 5.1932 1.2266 -1.0700 10 6 6.0903 0.3407 -0.4738 11 6 7.3236 0.8257 -0.0727 12 9 8.2270 0.0041 0.5053 13 7 7.6051 2.1099 -0.2590 14 6 6.7320 2.9207 -0.8217 15 7 5.5494 2.4996 -1.2219 16 7 2.0183 -0.6905 1.1962 17 6 2.1470 -0.0182 2.3572 18 8 1.8581 1.1585 2.4117 19 6 2.6488 -0.7286 3.5878 20 16 2.7105 0.4348 4.9731 21 6 3.3120 -0.6308 6.2409 22 1 3.5207 -1.6674 6.0212 23 6 3.5177 -0.1380 7.5221 24 7 3.9675 -0.9338 8.4691 25 14 3.1574 1.6552 7.9020 26 1 1.7463 1.7938 8.3434 27 1 4.0622 2.1238 8.9822 28 1 3.3772 2.4734 6.6824 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5137 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6055 -0.2619 -2.1369 33 1 1.7517 -1.7716 -1.2055 34 1 3.8002 -2.4821 -2.3592 35 1 3.6547 -1.0595 -3.4193 36 1 5.1715 -1.3612 -2.5384 37 1 3.3285 1.4128 -1.9028 38 1 5.8306 -0.6978 -0.3312 39 1 6.9931 3.9596 -0.9587 40 1 2.2491 -1.6317 1.1527 41 1 1.9759 -1.5504 3.8327 42 1 3.6479 -1.1211 3.3987 43 1 4.1109 -0.5896 9.3645 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089245410.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:34 Heat of formation + Delta-G solvation = -60.503165 kcal Electronic energy + Delta-G solvation = -27435.745388 eV Core-core repulsion = 23362.767165 eV Total energy + Delta-G solvation = -4072.978223 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.127 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -50.25377 -41.94812 -40.88498 -38.91314 -36.56334 -34.69917 -34.45708 -33.20119 -32.32883 -30.84921 -30.03831 -27.87225 -27.75277 -25.70822 -24.64150 -23.00311 -22.10309 -21.51787 -20.00790 -19.77936 -19.24241 -17.98618 -17.43175 -17.38471 -17.12468 -17.07625 -16.70350 -16.54013 -16.27040 -15.84918 -15.66125 -15.34172 -15.04530 -15.00153 -14.82203 -14.59733 -14.53397 -13.90878 -13.62951 -13.39119 -13.36623 -13.15701 -13.04313 -12.95152 -12.72064 -12.59543 -12.15754 -11.99284 -11.90405 -11.72355 -11.67956 -11.19684 -10.96521 -10.88380 -10.56734 -10.55786 -10.12199 -9.32323 -9.01983 -8.54194 -6.24641 -0.21208 0.14442 0.97307 1.27603 1.43925 1.53705 1.58320 1.84070 2.20954 2.26731 2.35024 2.68240 2.70450 2.84330 3.20136 3.48876 3.62703 3.78137 3.90591 3.92821 4.08027 4.14292 4.20635 4.32761 4.42467 4.43617 4.49214 4.54827 4.73006 4.78145 4.83747 4.92207 4.99980 5.14791 5.24622 5.32304 5.36522 5.51362 5.57809 5.68260 6.01334 6.08786 6.44654 6.49853 6.91452 7.05388 7.23700 8.58334 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.009272 B = 0.003582 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3019.225316 B = 7814.299781 C = 9601.119302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.139 3.861 3 H 0.063 0.937 4 C -0.121 4.121 5 C 0.138 3.862 6 H 0.080 0.920 7 C -0.163 4.163 8 N -0.685 5.685 9 C 0.459 3.541 10 C -0.316 4.316 11 C 0.361 3.639 12 F -0.110 7.110 13 N -0.619 5.619 14 C 0.372 3.628 15 N -0.596 5.596 16 N -0.706 5.706 17 C 0.535 3.465 18 O -0.562 6.562 19 C -0.112 4.112 20 S -0.180 6.180 21 C -0.528 4.528 22 H 0.063 0.937 23 C 0.048 3.952 24 N -0.916 5.916 25 Si 0.911 3.089 26 H -0.260 1.260 27 H -0.259 1.259 28 H -0.241 1.241 29 H 0.027 0.973 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.112 0.888 33 H 0.120 0.880 34 H 0.092 0.908 35 H 0.071 0.929 36 H 0.047 0.953 37 H 0.416 0.584 38 H 0.169 0.831 39 H 0.237 0.763 40 H 0.416 0.584 41 H 0.114 0.886 42 H 0.109 0.891 43 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.709 -2.007 -29.242 29.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.034 3.966 3 H 0.081 0.919 4 C -0.158 4.158 5 C 0.033 3.967 6 H 0.098 0.902 7 C -0.221 4.221 8 N -0.316 5.316 9 C 0.214 3.786 10 C -0.346 4.346 11 C 0.205 3.795 12 F -0.089 7.089 13 N -0.345 5.345 14 C 0.083 3.917 15 N -0.322 5.322 16 N -0.360 5.360 17 C 0.320 3.680 18 O -0.441 6.441 19 C -0.263 4.263 20 S 0.047 5.953 21 C -0.676 4.676 22 H 0.081 0.919 23 C -0.157 4.157 24 N -0.554 5.554 25 Si 0.733 3.267 26 H -0.185 1.185 27 H -0.183 1.183 28 H -0.165 1.165 29 H 0.046 0.954 30 H 0.104 0.896 31 H 0.094 0.906 32 H 0.131 0.869 33 H 0.138 0.862 34 H 0.110 0.890 35 H 0.090 0.910 36 H 0.066 0.934 37 H 0.254 0.746 38 H 0.187 0.813 39 H 0.253 0.747 40 H 0.253 0.747 41 H 0.132 0.868 42 H 0.127 0.873 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.948 0.512 -29.068 29.222 hybrid contribution 0.502 -1.944 1.196 2.337 sum -2.446 -1.433 -27.872 28.016 Atomic orbital electron populations 1.22148 0.94515 1.03133 1.02051 1.21098 0.94523 0.96984 0.83959 0.91854 1.22224 0.92384 1.04258 0.96977 1.21396 0.96204 0.79135 0.99929 0.90218 1.22245 1.01111 1.01003 0.97777 1.44784 1.12178 1.11726 1.62918 1.18477 0.86915 0.87811 0.85434 1.21931 0.94891 1.04596 1.13178 1.18314 0.85417 0.86281 0.89535 1.91638 1.66980 1.69405 1.80925 1.67854 1.39381 1.03670 1.23628 1.25175 0.81935 1.00097 0.84452 1.68086 1.21181 1.15115 1.27819 1.45849 1.67310 1.14524 1.08341 1.19889 0.76829 0.86563 0.84674 1.90697 1.50664 1.17572 1.85126 1.23287 1.05925 1.02279 0.94840 1.84755 1.86970 1.18601 1.05019 1.22455 1.50404 0.98125 0.96617 0.91902 1.25517 0.93234 1.02031 0.94950 1.70005 1.44548 1.37664 1.03179 0.85911 0.79682 0.80617 0.80442 1.18471 1.18315 1.16482 0.95405 0.89599 0.90558 0.86940 0.86153 0.88957 0.91014 0.93383 0.74645 0.81327 0.74720 0.74687 0.86825 0.87321 0.91347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.33 9.48 71.98 0.68 -1.65 16 2 C 0.14 2.06 2.52 44.99 0.11 2.17 16 3 H 0.06 1.36 7.06 -2.39 -0.02 1.34 16 4 C -0.12 -0.62 4.29 30.59 0.13 -0.49 16 5 C 0.14 1.18 2.22 44.99 0.10 1.28 16 6 H 0.08 0.88 5.97 -2.39 -0.01 0.87 16 7 C -0.16 -0.90 9.47 71.98 0.68 -0.22 16 8 N -0.68 -9.44 4.60 -324.14 -1.49 -10.93 16 9 C 0.46 9.58 7.69 133.09 1.02 10.60 16 10 C -0.32 -6.95 8.95 22.62 0.20 -6.75 16 11 C 0.36 9.70 8.50 84.60 0.72 10.41 16 12 F -0.11 -3.08 17.30 44.97 0.78 -2.30 16 13 N -0.62 -16.78 10.45 -201.32 -2.10 -18.89 16 14 C 0.37 8.25 12.28 180.90 2.22 10.47 16 15 N -0.60 -13.59 10.47 -197.69 -2.07 -15.66 16 16 N -0.71 -13.48 4.45 -442.53 -1.97 -15.45 16 17 C 0.54 17.29 7.81 87.66 0.68 17.98 16 18 O -0.56 -23.40 15.53 -3.05 -0.05 -23.45 16 19 C -0.11 -4.13 6.16 71.24 0.44 -3.69 16 20 S -0.18 -9.17 18.55 -56.49 -1.05 -10.21 16 21 C -0.53 -30.99 10.04 67.96 0.68 -30.31 16 22 H 0.06 3.87 8.03 -2.91 -0.02 3.85 16 23 C 0.05 2.86 5.50 84.86 0.47 3.33 16 24 N -0.92 -56.22 13.97 21.65 0.30 -55.91 16 25 Si 0.91 45.74 27.74 68.60 1.90 47.64 16 26 H -0.26 -12.65 7.11 99.48 0.71 -11.94 16 27 H -0.26 -12.20 7.11 99.48 0.71 -11.50 16 28 H -0.24 -12.19 6.74 99.48 0.67 -11.52 16 29 H 0.03 0.62 8.14 -2.39 -0.02 0.61 16 30 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.11 0.18 8.14 -2.39 -0.02 0.16 16 33 H 0.12 0.06 8.14 -2.38 -0.02 0.04 16 34 H 0.09 0.19 8.14 -2.39 -0.02 0.17 16 35 H 0.07 0.32 8.14 -2.38 -0.02 0.30 16 36 H 0.05 0.43 7.82 -2.39 -0.02 0.42 16 37 H 0.42 4.98 8.73 -92.71 -0.81 4.17 16 38 H 0.17 2.92 6.34 -2.91 -0.02 2.90 16 39 H 0.24 3.28 8.06 -2.91 -0.02 3.25 16 40 H 0.42 5.03 8.60 -92.70 -0.80 4.23 16 41 H 0.11 3.80 8.14 -2.39 -0.02 3.78 16 42 H 0.11 3.71 8.14 -2.39 -0.02 3.69 16 43 H 0.28 15.73 8.31 -92.71 -0.77 14.96 16 Total: -1.00 -82.42 381.10 1.82 -80.60 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: -0.58 Total: 11.43 kcal Atomic # 6 Polarization: 4.98 SS G_CDS: 8.15 Total: 13.13 kcal Atomic # 7 Polarization: -109.51 SS G_CDS: -7.33 Total: -116.84 kcal Atomic # 8 Polarization: -23.40 SS G_CDS: -0.05 Total: -23.45 kcal Atomic # 9 Polarization: -3.08 SS G_CDS: 0.78 Total: -2.30 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 1.90 Total: 47.64 kcal Atomic # 16 Polarization: -9.17 SS G_CDS: -1.05 Total: -10.21 kcal Total: -82.42 1.82 -80.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089245410.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.093 kcal (2) G-P(sol) polarization free energy of solvation -82.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds