Wall clock time and date at job start Wed Apr 1 2020 02:52:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47407 * 2 1 4 4 C 1.52999 * 109.46732 * 240.00119 * 2 1 3 5 5 C 1.52999 * 109.47222 * 175.00064 * 4 2 1 6 6 H 1.09007 * 109.47200 * 305.00115 * 5 4 2 7 7 C 1.52995 * 109.47524 * 185.00123 * 5 4 2 8 8 N 1.46499 * 109.47155 * 64.99979 * 5 4 2 9 9 C 1.38575 * 120.00032 * 205.00145 * 8 5 4 10 10 C 1.39465 * 120.51272 * 359.72511 * 9 8 5 11 11 C 1.38479 * 118.30857 * 179.75280 * 10 9 8 12 12 F 1.35099 * 120.42658 * 180.21499 * 11 10 9 13 13 N 1.32784 * 119.13553 * 0.51840 * 11 10 9 14 14 C 1.31759 * 120.96661 * 359.72363 * 13 11 10 15 15 N 1.31758 * 121.85801 * 0.02562 * 14 13 11 16 16 N 1.46500 * 109.47133 * 120.00387 * 2 1 3 17 17 C 1.34781 * 119.99948 * 274.99404 * 16 2 1 18 18 O 1.21282 * 119.99648 * 0.02562 * 17 16 2 19 19 C 1.50691 * 119.99975 * 180.02562 * 17 16 2 20 20 S 1.81001 * 109.47091 * 180.02562 * 19 17 16 21 21 C 1.76204 * 99.99872 * 180.02562 * 20 19 17 22 22 H 1.07995 * 120.00400 * 0.02562 * 21 20 19 23 23 C 1.38797 * 119.99879 * 179.97438 * 21 20 19 24 24 N 1.31632 * 120.00042 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 120.00022 * 179.97438 * 23 21 20 26 26 H 1.48494 * 109.47125 * 90.00439 * 25 23 21 27 27 H 1.48500 * 109.47148 * 210.00510 * 25 23 21 28 28 H 1.48501 * 109.47038 * 330.00312 * 25 23 21 29 29 H 1.08999 * 109.47472 * 59.99413 * 1 2 3 30 30 H 1.09003 * 109.47407 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46567 * 300.00104 * 1 2 3 32 32 H 1.09002 * 109.47308 * 55.00165 * 4 2 1 33 33 H 1.08995 * 109.47507 * 295.00347 * 4 2 1 34 34 H 1.09001 * 109.47831 * 179.97438 * 7 5 4 35 35 H 1.08996 * 109.47227 * 299.99947 * 7 5 4 36 36 H 1.09005 * 109.47314 * 59.99924 * 7 5 4 37 37 H 0.96999 * 119.99984 * 25.00030 * 8 5 4 38 38 H 1.07998 * 120.84516 * 359.97438 * 10 9 8 39 39 H 1.08004 * 119.07187 * 180.02562 * 14 13 11 40 40 H 0.97000 * 119.99640 * 95.00086 * 16 2 1 41 41 H 1.08999 * 109.47283 * 300.00560 * 19 17 16 42 42 H 1.09007 * 109.47383 * 60.00267 * 19 17 16 43 43 H 0.97001 * 120.00417 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5647 -0.6133 -1.3138 6 1 3.8570 0.4358 -1.2679 7 6 4.0643 -1.2250 -2.6242 8 7 4.1536 -1.3343 -0.1826 9 6 5.4091 -0.9816 0.2859 10 6 6.1240 0.0543 -0.3151 11 6 7.3722 0.3720 0.1933 12 9 8.0997 1.3706 -0.3533 13 7 7.8474 -0.3216 1.2211 14 6 7.1471 -1.2979 1.7619 15 7 5.9537 -1.6294 1.3124 16 7 2.0183 -0.6907 1.1961 17 6 2.1472 -0.0183 2.3571 18 8 1.8584 1.1583 2.4117 19 6 2.6500 -0.7287 3.5873 20 16 2.7102 0.4341 4.9731 21 6 3.3149 -0.6308 6.2400 22 1 3.5256 -1.6668 6.0197 23 6 3.5214 -0.1379 7.5210 24 7 3.2651 1.1250 7.7895 25 14 4.1618 -1.2671 8.8643 26 1 5.6462 -1.2277 8.8781 27 1 3.6424 -0.8152 10.1801 28 1 3.7058 -2.6559 8.6026 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3632 0.5139 0.8900 32 1 1.6053 -0.2617 -2.1370 33 1 1.7515 -1.7714 -1.2057 34 1 5.1506 -1.1478 -2.6704 35 1 3.7721 -2.2741 -2.6701 36 1 3.6262 -0.6886 -3.4659 37 1 3.6647 -2.0585 0.2384 38 1 5.7129 0.5971 -1.1533 39 1 7.5630 -1.8418 2.5972 40 1 2.2490 -1.6318 1.1524 41 1 1.9779 -1.5510 3.8324 42 1 3.6494 -1.1205 3.3977 43 1 3.4090 1.4694 8.6848 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089245412.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:40 Heat of formation + Delta-G solvation = -50.603133 kcal Electronic energy + Delta-G solvation = -27902.694139 eV Core-core repulsion = 23830.145214 eV Total energy + Delta-G solvation = -4072.548926 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.127 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -50.24390 -41.95669 -40.88202 -38.90382 -36.40401 -34.58907 -34.48972 -33.23173 -32.32176 -30.86005 -29.87284 -27.75474 -27.64818 -25.69731 -24.62315 -22.99350 -22.13878 -21.55940 -19.84869 -19.73666 -19.22761 -17.90444 -17.55401 -17.34553 -16.93672 -16.87795 -16.72095 -16.54680 -16.29666 -15.93339 -15.59094 -15.36734 -14.96444 -14.82113 -14.61015 -14.53775 -14.40736 -13.81190 -13.59891 -13.31366 -13.16547 -13.15086 -12.91718 -12.89162 -12.67210 -12.56885 -12.18922 -11.93932 -11.76539 -11.70628 -11.64245 -11.14312 -10.90643 -10.86142 -10.54283 -10.28360 -10.12098 -9.26297 -8.66642 -8.34743 -6.12472 -0.18969 0.17614 1.27189 1.42022 1.46886 1.57234 1.63611 1.83551 2.26611 2.33461 2.36196 2.70740 2.99736 3.20881 3.32194 3.49356 3.65982 3.82795 3.94411 3.98545 4.10190 4.17039 4.26797 4.35207 4.41796 4.49412 4.52717 4.56594 4.75112 4.80418 4.85229 4.93683 4.98591 5.14358 5.26123 5.33674 5.38691 5.41626 5.56639 5.59049 6.02527 6.19785 6.41339 6.49743 7.06831 7.07683 7.27050 8.74527 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.009311 B = 0.003945 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3006.488894 B = 7096.745695 C = 9178.294449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.138 3.862 3 H 0.063 0.937 4 C -0.119 4.119 5 C 0.139 3.861 6 H 0.080 0.920 7 C -0.162 4.162 8 N -0.683 5.683 9 C 0.459 3.541 10 C -0.315 4.315 11 C 0.361 3.639 12 F -0.109 7.109 13 N -0.618 5.618 14 C 0.372 3.628 15 N -0.592 5.592 16 N -0.702 5.702 17 C 0.537 3.463 18 O -0.566 6.566 19 C -0.127 4.127 20 S -0.151 6.151 21 C -0.543 4.543 22 H 0.081 0.919 23 C 0.015 3.985 24 N -0.912 5.912 25 Si 0.996 3.004 26 H -0.268 1.268 27 H -0.278 1.278 28 H -0.257 1.257 29 H 0.088 0.912 30 H 0.074 0.926 31 H 0.025 0.975 32 H 0.131 0.869 33 H 0.102 0.898 34 H 0.048 0.952 35 H 0.070 0.930 36 H 0.091 0.909 37 H 0.411 0.589 38 H 0.173 0.827 39 H 0.227 0.773 40 H 0.407 0.593 41 H 0.104 0.896 42 H 0.099 0.901 43 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.261 -10.130 -25.766 27.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.034 3.966 3 H 0.081 0.919 4 C -0.157 4.157 5 C 0.035 3.965 6 H 0.098 0.902 7 C -0.220 4.220 8 N -0.316 5.316 9 C 0.214 3.786 10 C -0.344 4.344 11 C 0.204 3.796 12 F -0.088 7.088 13 N -0.345 5.345 14 C 0.083 3.917 15 N -0.317 5.317 16 N -0.358 5.358 17 C 0.323 3.677 18 O -0.444 6.444 19 C -0.278 4.278 20 S 0.076 5.924 21 C -0.691 4.691 22 H 0.099 0.901 23 C -0.190 4.190 24 N -0.549 5.549 25 Si 0.818 3.182 26 H -0.193 1.193 27 H -0.203 1.203 28 H -0.181 1.181 29 H 0.107 0.893 30 H 0.093 0.907 31 H 0.044 0.956 32 H 0.149 0.851 33 H 0.121 0.879 34 H 0.067 0.933 35 H 0.089 0.911 36 H 0.110 0.890 37 H 0.250 0.750 38 H 0.190 0.810 39 H 0.243 0.757 40 H 0.245 0.755 41 H 0.122 0.878 42 H 0.117 0.883 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.487 -8.370 -25.091 26.455 hybrid contribution 0.652 -1.307 0.731 1.633 sum 0.165 -9.677 -24.361 26.213 Atomic orbital electron populations 1.22143 0.94520 1.03012 1.02097 1.21143 0.94566 0.96931 0.83969 0.91872 1.22235 0.92388 1.03499 0.97557 1.21409 0.93593 0.96501 0.84975 0.90223 1.22231 1.01362 1.02456 0.95941 1.44893 1.13482 1.38243 1.34965 1.18481 0.86847 0.86731 0.86580 1.21936 0.96610 1.06040 1.09818 1.18288 0.87428 0.84780 0.89146 1.91625 1.77614 1.56719 1.82843 1.67828 1.40556 1.12537 1.13561 1.25008 0.84518 0.87393 0.94767 1.68059 1.14922 1.33391 1.15343 1.45964 1.67345 1.13934 1.08529 1.19933 0.76561 0.86528 0.84713 1.90687 1.50771 1.17744 1.85184 1.23333 1.04866 1.03101 0.96535 1.85534 1.86553 1.17482 1.02815 1.23164 1.50791 0.98353 0.96760 0.90129 1.26101 0.95036 0.97150 1.00692 1.70185 1.46931 1.15545 1.22242 0.84985 0.78547 0.78313 0.76359 1.19327 1.20294 1.18059 0.89293 0.90722 0.95608 0.85116 0.87946 0.93263 0.91059 0.88987 0.75020 0.80980 0.75728 0.75542 0.87762 0.88273 0.92058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.56 9.48 71.98 0.68 -1.87 16 2 C 0.14 2.27 2.57 44.99 0.12 2.39 16 3 H 0.06 1.44 7.58 -2.39 -0.02 1.42 16 4 C -0.12 -0.72 4.43 30.59 0.14 -0.58 16 5 C 0.14 1.28 2.27 44.99 0.10 1.38 16 6 H 0.08 0.94 6.52 -2.38 -0.02 0.92 16 7 C -0.16 -0.92 9.44 71.98 0.68 -0.24 16 8 N -0.68 -9.90 3.95 -324.14 -1.28 -11.18 16 9 C 0.46 10.17 7.69 133.10 1.02 11.20 16 10 C -0.31 -7.08 8.90 22.62 0.20 -6.88 16 11 C 0.36 9.96 8.50 84.61 0.72 10.68 16 12 F -0.11 -2.96 17.30 44.97 0.78 -2.18 16 13 N -0.62 -18.39 10.45 -201.31 -2.10 -20.49 16 14 C 0.37 9.84 12.28 180.91 2.22 12.06 16 15 N -0.59 -15.17 10.47 -197.70 -2.07 -17.24 16 16 N -0.70 -15.23 3.80 -442.53 -1.68 -16.92 16 17 C 0.54 19.24 7.81 87.65 0.68 19.92 16 18 O -0.57 -25.80 15.52 -3.04 -0.05 -25.85 16 19 C -0.13 -5.13 6.16 71.23 0.44 -4.69 16 20 S -0.15 -8.52 20.57 -56.49 -1.16 -9.69 16 21 C -0.54 -31.47 9.50 67.95 0.65 -30.82 16 22 H 0.08 4.36 7.80 -2.91 -0.02 4.34 16 23 C 0.01 0.86 5.49 84.86 0.47 1.32 16 24 N -0.91 -56.89 13.22 21.65 0.29 -56.61 16 25 Si 1.00 44.23 29.55 68.60 2.03 46.26 16 26 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 27 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 28 H -0.26 -10.65 7.11 99.48 0.71 -9.95 16 29 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.13 0.15 8.14 -2.39 -0.02 0.13 16 33 H 0.10 0.24 8.14 -2.39 -0.02 0.23 16 34 H 0.05 0.44 7.72 -2.39 -0.02 0.42 16 35 H 0.07 0.33 8.14 -2.39 -0.02 0.31 16 36 H 0.09 0.20 8.14 -2.38 -0.02 0.18 16 37 H 0.41 5.12 6.63 -92.71 -0.61 4.51 16 38 H 0.17 2.91 6.27 -2.91 -0.02 2.89 16 39 H 0.23 4.63 8.06 -2.91 -0.02 4.61 16 40 H 0.41 6.32 6.51 -92.71 -0.60 5.72 16 41 H 0.10 3.82 8.14 -2.40 -0.02 3.80 16 42 H 0.10 3.84 8.14 -2.39 -0.02 3.82 16 43 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 Total: -1.00 -84.06 379.37 2.70 -81.35 By element: Atomic # 1 Polarization: 18.84 SS G_CDS: -0.16 Total: 18.68 kcal Atomic # 6 Polarization: 5.75 SS G_CDS: 8.12 Total: 13.86 kcal Atomic # 7 Polarization: -115.58 SS G_CDS: -6.85 Total: -122.43 kcal Atomic # 8 Polarization: -25.80 SS G_CDS: -0.05 Total: -25.85 kcal Atomic # 9 Polarization: -2.96 SS G_CDS: 0.78 Total: -2.18 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Atomic # 16 Polarization: -8.52 SS G_CDS: -1.16 Total: -9.69 kcal Total: -84.06 2.70 -81.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089245412.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.749 kcal (2) G-P(sol) polarization free energy of solvation -84.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds