Wall clock time and date at job start Wed Apr 1 2020 02:53:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47846 * 2 1 4 4 C 1.53002 * 109.46818 * 240.00139 * 2 1 3 5 5 C 1.53006 * 109.47291 * 175.00156 * 4 2 1 6 6 H 1.08999 * 109.46768 * 55.00018 * 5 4 2 7 7 C 1.52994 * 109.47350 * 175.00171 * 5 4 2 8 8 N 1.46501 * 109.46890 * 295.00131 * 5 4 2 9 9 C 1.39119 * 119.99915 * 154.99607 * 8 5 4 10 10 N 1.32567 * 120.10702 * 0.02701 * 9 8 5 11 11 C 1.32313 * 119.94349 * 179.97438 * 10 9 8 12 12 C 1.38064 * 120.16452 * 359.97438 * 11 10 9 13 13 N 1.32354 * 120.21924 * 0.02562 * 12 11 10 14 14 C 1.32066 * 120.05744 * 0.02562 * 13 12 11 15 15 F 1.35095 * 120.08386 * 179.97438 * 14 13 12 16 16 N 1.46502 * 109.47345 * 120.00435 * 2 1 3 17 17 C 1.34780 * 120.00187 * 274.99759 * 16 2 1 18 18 O 1.21281 * 119.99351 * 359.97438 * 17 16 2 19 19 C 1.50697 * 120.00104 * 179.97438 * 17 16 2 20 20 S 1.80996 * 109.46984 * 179.97438 * 19 17 16 21 21 C 1.76199 * 99.99973 * 180.02562 * 20 19 17 22 22 H 1.08000 * 120.00154 * 0.02562 * 21 20 19 23 23 C 1.38797 * 119.99786 * 179.97438 * 21 20 19 24 24 N 1.31632 * 120.00307 * 0.02562 * 23 21 20 25 25 Si 1.86808 * 120.00055 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.46868 * 60.00085 * 25 23 21 27 27 H 1.48494 * 109.47293 * 180.02562 * 25 23 21 28 28 H 1.48506 * 109.46496 * 300.00356 * 25 23 21 29 29 H 1.08994 * 109.47206 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46638 * 299.99992 * 1 2 3 31 31 H 1.08996 * 109.46836 * 59.99549 * 1 2 3 32 32 H 1.09001 * 109.46937 * 55.00422 * 4 2 1 33 33 H 1.08997 * 109.47591 * 295.00213 * 4 2 1 34 34 H 1.09000 * 109.47420 * 59.99637 * 7 5 4 35 35 H 1.09002 * 109.47450 * 180.02562 * 7 5 4 36 36 H 1.09001 * 109.47316 * 300.00138 * 7 5 4 37 37 H 0.96996 * 120.00179 * 334.99737 * 8 5 4 38 38 H 1.07991 * 119.91927 * 180.02562 * 11 10 9 39 39 H 1.07995 * 119.88791 * 180.28255 * 12 11 10 40 40 H 0.97004 * 120.00018 * 94.99781 * 16 2 1 41 41 H 1.08996 * 109.47078 * 300.00405 * 19 17 16 42 42 H 1.09004 * 109.46379 * 60.00641 * 19 17 16 43 43 H 0.97003 * 119.99950 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5648 -0.6134 -1.3138 6 1 3.9953 -0.9924 -0.3870 7 6 4.0850 -1.4383 -2.4926 8 7 3.9479 0.7893 -1.4925 9 6 5.2003 1.2271 -1.0737 10 7 6.0488 0.3767 -0.5131 11 6 7.2392 0.7964 -0.1164 12 6 7.6005 2.1182 -0.2853 13 7 6.7585 2.9728 -0.8442 14 6 5.5677 2.5635 -1.2424 15 9 4.7076 3.4354 -1.8125 16 7 2.0184 -0.6907 1.1961 17 6 2.1472 -0.0184 2.3572 18 8 1.8592 1.1584 2.4115 19 6 2.6490 -0.7291 3.5877 20 16 2.7108 0.4341 4.9730 21 6 3.3140 -0.6312 6.2403 22 1 3.5232 -1.6677 6.0203 23 6 3.5211 -0.1381 7.5211 24 7 3.2666 1.1252 7.7891 25 14 4.1612 -1.2674 8.8645 26 1 5.4873 -1.8056 8.4684 27 1 4.2946 -0.5038 10.1311 28 1 3.2099 -2.3905 9.0618 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.6053 -0.2616 -2.1370 33 1 1.7515 -1.7715 -1.2057 34 1 3.6544 -1.0593 -3.4195 35 1 5.1714 -1.3618 -2.5383 36 1 3.7999 -2.4819 -2.3597 37 1 3.3285 1.4128 -1.9028 38 1 7.9303 0.1032 0.3398 39 1 8.5750 2.4549 0.0360 40 1 2.2491 -1.6319 1.1525 41 1 1.9761 -1.5509 3.8324 42 1 3.6482 -1.1215 3.3984 43 1 3.4111 1.4697 8.6844 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089248972.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:53:01 Heat of formation + Delta-G solvation = -34.038066 kcal Electronic energy + Delta-G solvation = -27482.126541 eV Core-core repulsion = 23410.295930 eV Total energy + Delta-G solvation = -4071.830610 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.127 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.13957 -41.09492 -39.58152 -37.85538 -35.47744 -33.99573 -32.47630 -32.41884 -31.23688 -29.27349 -28.54799 -27.06958 -25.47875 -24.89437 -23.96102 -21.99120 -21.14385 -20.29565 -18.75690 -18.15442 -17.90144 -17.78982 -16.52150 -16.40896 -16.19039 -15.59561 -15.28329 -14.87277 -14.79942 -14.36724 -14.32222 -14.16726 -14.03136 -13.76735 -13.39054 -13.21349 -12.95007 -12.83772 -12.64407 -12.39044 -12.31758 -11.99965 -11.91785 -11.80200 -11.37449 -11.13145 -11.04131 -11.03624 -10.97143 -10.76424 -10.32387 -9.82016 -9.43331 -9.36983 -9.06141 -8.89877 -8.23283 -8.07250 -6.49506 -6.21103 -3.91775 0.61356 0.96746 2.62338 3.04132 3.11601 3.23285 3.27505 3.30302 3.31457 3.46577 3.71996 3.99883 4.08181 4.20816 4.27256 4.53689 4.79170 4.89467 4.98262 5.06790 5.12931 5.13858 5.19749 5.24336 5.29572 5.33615 5.44921 5.47968 5.59123 5.65793 5.70065 5.88916 5.89410 5.98533 6.04999 6.13810 6.17501 6.62328 6.69701 6.73135 7.20488 7.59307 7.62219 7.71971 8.35217 8.63806 9.23936 10.86249 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.010322 B = 0.003207 C = 0.002768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2711.955787 B = 8727.676531 C =10113.019674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.142 3.858 3 H 0.087 0.913 4 C -0.137 4.137 5 C 0.150 3.850 6 H 0.097 0.903 7 C -0.162 4.162 8 N -0.702 5.702 9 C 0.358 3.642 10 N -0.475 5.475 11 C 0.099 3.901 12 C 0.011 3.989 13 N -0.431 5.431 14 C 0.196 3.804 15 F -0.110 7.110 16 N -0.733 5.733 17 C 0.533 3.467 18 O -0.517 6.517 19 C -0.153 4.153 20 S -0.060 6.060 21 C -0.536 4.536 22 H 0.072 0.928 23 C 0.074 3.926 24 N -0.868 5.868 25 Si 0.918 3.082 26 H -0.274 1.274 27 H -0.283 1.283 28 H -0.274 1.274 29 H 0.056 0.944 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.055 0.945 35 H 0.061 0.939 36 H 0.066 0.934 37 H 0.412 0.588 38 H 0.178 0.822 39 H 0.176 0.824 40 H 0.396 0.604 41 H 0.088 0.912 42 H 0.088 0.912 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.014 -6.154 -23.478 24.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.037 3.963 3 H 0.105 0.895 4 C -0.175 4.175 5 C 0.045 3.955 6 H 0.115 0.885 7 C -0.221 4.221 8 N -0.335 5.335 9 C 0.115 3.885 10 N -0.198 5.198 11 C -0.061 4.061 12 C -0.148 4.148 13 N -0.150 5.150 14 C 0.030 3.970 15 F -0.089 7.089 16 N -0.387 5.387 17 C 0.320 3.680 18 O -0.391 6.391 19 C -0.304 4.304 20 S 0.167 5.833 21 C -0.684 4.684 22 H 0.090 0.910 23 C -0.135 4.135 24 N -0.503 5.503 25 Si 0.744 3.256 26 H -0.199 1.199 27 H -0.208 1.208 28 H -0.199 1.199 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.102 0.898 33 H 0.106 0.894 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.250 0.750 38 H 0.195 0.805 39 H 0.193 0.807 40 H 0.230 0.770 41 H 0.107 0.893 42 H 0.106 0.894 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.444 -4.202 -23.238 23.741 hybrid contribution 0.480 -2.046 0.602 2.187 sum 2.924 -6.249 -22.636 23.664 Atomic orbital electron populations 1.22188 0.95303 1.02064 1.02697 1.20866 0.93910 0.97761 0.83741 0.89465 1.22266 0.94411 1.02542 0.98328 1.21030 0.94145 0.80284 0.99997 0.88508 1.22195 1.02046 0.99846 0.97965 1.44639 1.12517 1.11331 1.65040 1.19037 0.88826 0.88058 0.92555 1.68088 1.03548 1.34928 1.13273 1.23561 0.92317 0.95867 0.94363 1.23188 1.00137 0.90507 1.00999 1.67576 1.01205 1.38399 1.07841 1.18400 0.89325 0.85324 1.03941 1.91600 1.66350 1.69119 1.81860 1.46070 1.69415 1.13734 1.09516 1.20286 0.76759 0.87220 0.83785 1.90700 1.48252 1.15755 1.84398 1.23524 1.03550 1.04822 0.98469 1.85408 1.86300 1.12871 0.98754 1.22824 1.51086 0.98102 0.96424 0.91023 1.24983 0.95084 0.95512 0.97919 1.70011 1.45475 1.13218 1.21598 0.86238 0.79327 0.80033 0.79987 1.19921 1.20799 1.19940 0.92511 0.91602 0.91984 0.89847 0.89416 0.92635 0.92031 0.91488 0.75030 0.80484 0.80709 0.77022 0.89337 0.89401 0.92134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.67 9.48 37.16 0.35 -1.32 16 2 C 0.14 1.52 2.52 -67.93 -0.17 1.34 16 3 H 0.09 1.16 7.05 -51.93 -0.37 0.80 16 4 C -0.14 -0.93 4.29 -26.73 -0.11 -1.05 16 5 C 0.15 1.24 2.54 -67.93 -0.17 1.06 16 6 H 0.10 0.99 7.04 -51.93 -0.37 0.63 16 7 C -0.16 -1.11 9.50 37.15 0.35 -0.76 16 8 N -0.70 -6.83 4.60 -53.73 -0.25 -7.07 16 9 C 0.36 4.35 7.48 -154.58 -1.16 3.19 16 10 N -0.48 -5.64 9.38 -12.17 -0.11 -5.75 16 11 C 0.10 0.97 11.21 -17.41 -0.20 0.78 16 12 C 0.01 0.12 11.21 -17.39 -0.19 -0.08 16 13 N -0.43 -5.79 10.50 -13.24 -0.14 -5.93 16 14 C 0.20 2.62 8.46 -16.94 -0.14 2.47 16 15 F -0.11 -1.45 16.68 2.25 0.04 -1.41 16 16 N -0.73 -9.27 4.45 -53.81 -0.24 -9.51 16 17 C 0.53 9.86 7.81 -10.99 -0.09 9.77 16 18 O -0.52 -11.74 15.52 5.56 0.09 -11.66 16 19 C -0.15 -3.10 6.16 36.00 0.22 -2.87 16 20 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 21 C -0.54 -15.32 9.50 30.94 0.29 -15.03 16 22 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 23 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 24 N -0.87 -26.31 13.22 55.49 0.73 -25.57 16 25 Si 0.92 21.40 29.55 -169.99 -5.02 16.38 16 26 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 27 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 28 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.41 3.51 8.09 -40.82 -0.33 3.18 16 38 H 0.18 1.12 8.06 -52.49 -0.42 0.70 16 39 H 0.18 1.20 8.06 -52.49 -0.42 0.78 16 40 H 0.40 3.89 8.60 -40.82 -0.35 3.54 16 41 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 42 H 0.09 1.66 8.14 -51.91 -0.42 1.24 16 43 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 385.89 15.07 5.82 5.82 Total: -1.00 -36.76 385.89 -8.44 -45.20 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -6.03 Total: 3.81 kcal Atomic # 6 Polarization: 0.66 SS G_CDS: -1.11 Total: -0.45 kcal Atomic # 7 Polarization: -53.83 SS G_CDS: -0.01 Total: -53.84 kcal Atomic # 8 Polarization: -11.74 SS G_CDS: 0.09 Total: -11.66 kcal Atomic # 9 Polarization: -1.45 SS G_CDS: 0.04 Total: -1.41 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -36.76 -8.44 -45.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089248972.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.164 kcal (2) G-P(sol) polarization free energy of solvation -36.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds