Wall clock time and date at job start Wed Apr 1 2020 02:53:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.47667 * 2 1 4 4 C 1.53002 * 109.47136 * 119.99782 * 2 1 3 5 5 C 1.53001 * 109.47548 * 185.00074 * 4 2 1 6 6 H 1.09004 * 109.46745 * 304.99733 * 5 4 2 7 7 C 1.53001 * 109.47263 * 184.99994 * 5 4 2 8 8 N 1.46501 * 109.46884 * 64.99567 * 5 4 2 9 9 C 1.39123 * 119.99551 * 204.99779 * 8 5 4 10 10 N 1.32557 * 120.11071 * 359.97438 * 9 8 5 11 11 C 1.32313 * 119.94358 * 180.02562 * 10 9 8 12 12 C 1.38064 * 120.16452 * 359.97438 * 11 10 9 13 13 N 1.32354 * 120.21924 * 0.02562 * 12 11 10 14 14 C 1.32066 * 120.05744 * 0.02562 * 13 12 11 15 15 F 1.35096 * 120.08422 * 180.02562 * 14 13 12 16 16 N 1.46504 * 109.47298 * 239.99473 * 2 1 3 17 17 C 1.34779 * 119.99622 * 85.00565 * 16 2 1 18 18 O 1.21278 * 120.00182 * 359.97438 * 17 16 2 19 19 C 1.50695 * 119.99714 * 180.02562 * 17 16 2 20 20 S 1.81005 * 109.47264 * 179.97438 * 19 17 16 21 21 C 1.76197 * 100.00248 * 179.97438 * 20 19 17 22 22 H 1.08002 * 119.99805 * 359.97438 * 21 20 19 23 23 C 1.38790 * 119.99964 * 180.02562 * 21 20 19 24 24 N 1.31632 * 119.99914 * 180.02562 * 23 21 20 25 25 Si 1.86799 * 120.00221 * 0.02562 * 23 21 20 26 26 H 1.48498 * 109.47404 * 90.00136 * 25 23 21 27 27 H 1.48504 * 109.47029 * 210.00099 * 25 23 21 28 28 H 1.48499 * 109.46865 * 329.99719 * 25 23 21 29 29 H 1.08995 * 109.47458 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47023 * 300.00521 * 1 2 3 31 31 H 1.09003 * 109.46780 * 60.00260 * 1 2 3 32 32 H 1.09000 * 109.47346 * 64.99520 * 4 2 1 33 33 H 1.09009 * 109.47046 * 304.99884 * 4 2 1 34 34 H 1.08996 * 109.46694 * 179.97438 * 7 5 4 35 35 H 1.08998 * 109.46604 * 299.99707 * 7 5 4 36 36 H 1.09001 * 109.46858 * 59.99740 * 7 5 4 37 37 H 0.96996 * 120.00222 * 25.00853 * 8 5 4 38 38 H 1.07991 * 119.91927 * 180.02562 * 11 10 9 39 39 H 1.07995 * 119.88791 * 180.28255 * 12 11 10 40 40 H 0.96996 * 120.00341 * 265.00164 * 16 2 1 41 41 H 1.08999 * 109.47529 * 299.99386 * 19 17 16 42 42 H 1.09005 * 109.47135 * 59.99731 * 19 17 16 43 43 H 0.97010 * 120.00124 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.6133 1.3138 6 1 3.9954 -0.9924 0.3870 7 6 4.0850 -1.4383 2.4927 8 7 3.9479 0.7894 1.4925 9 6 5.2003 1.2271 1.0737 10 7 6.0488 0.3768 0.5133 11 6 7.2393 0.7965 0.1167 12 6 7.6002 2.1185 0.2846 13 7 6.7580 2.9731 0.8433 14 6 5.5680 2.5634 1.2433 15 9 4.7078 3.4353 1.8132 16 7 2.0183 -0.6907 -1.1961 17 6 2.1472 -0.0184 -2.3571 18 8 1.8583 1.1583 -2.4117 19 6 2.6490 -0.7290 -3.5876 20 16 2.7095 0.4338 -4.9734 21 6 3.3128 -0.6314 -6.2406 22 1 3.5228 -1.6676 -6.0203 23 6 3.5191 -0.1385 -7.5216 24 7 3.9693 -0.9345 -8.4684 25 14 3.1579 1.6543 -7.9020 26 1 4.3772 2.4669 -7.6612 27 1 2.7481 1.7858 -9.3233 28 1 2.0610 2.1353 -7.0241 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.7515 -1.7715 1.2058 33 1 1.6053 -0.2616 2.1371 34 1 5.1714 -1.3617 2.5383 35 1 3.6544 -1.0592 3.4195 36 1 3.7999 -2.4819 2.3597 37 1 3.3284 1.4129 1.9028 38 1 7.9301 0.1035 -0.3402 39 1 8.5712 2.4573 -0.0449 40 1 2.2490 -1.6319 -1.1525 41 1 3.6481 -1.1215 -3.3985 42 1 1.9760 -1.5508 -3.8324 43 1 4.1139 -0.5899 -9.3636 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089248973.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:53:04 Heat of formation + Delta-G solvation = -33.924143 kcal Electronic energy + Delta-G solvation = -27544.993085 eV Core-core repulsion = 23473.167415 eV Total energy + Delta-G solvation = -4071.825670 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.127 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.18525 -41.13835 -39.68687 -37.92705 -35.55507 -34.04645 -32.53631 -32.43826 -31.32787 -29.31422 -28.68782 -27.11676 -25.61634 -24.93573 -24.00348 -22.06937 -21.20904 -20.39748 -18.80275 -18.19753 -17.94223 -17.82692 -16.57000 -16.52970 -16.24987 -15.65059 -15.32677 -15.03054 -14.92095 -14.41173 -14.39042 -14.21095 -13.95199 -13.82524 -13.42672 -13.37104 -12.94201 -12.90532 -12.79817 -12.48629 -12.40647 -12.09509 -12.01116 -11.84443 -11.43740 -11.27027 -11.18216 -11.02882 -11.00972 -10.60120 -10.36420 -9.86035 -9.50708 -9.47024 -9.03383 -8.97839 -8.50085 -8.11645 -6.92002 -6.29480 -4.01005 0.57118 0.92492 2.57899 2.76638 2.98286 3.25968 3.30289 3.33985 3.42355 3.50293 3.65376 3.95893 4.03998 4.22149 4.32806 4.48522 4.73460 4.75385 4.85219 4.94504 5.04908 5.09284 5.09833 5.18769 5.25662 5.26350 5.32181 5.40735 5.45708 5.56744 5.65028 5.76077 5.86268 5.91071 5.99937 6.00798 6.10811 6.54960 6.62960 6.68892 7.16189 7.58098 7.60932 7.93663 8.40943 8.50395 9.16948 10.79773 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.010242 B = 0.003406 C = 0.002914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2733.147963 B = 8219.895976 C = 9606.597551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.143 3.857 3 H 0.087 0.913 4 C -0.137 4.137 5 C 0.150 3.850 6 H 0.097 0.903 7 C -0.162 4.162 8 N -0.702 5.702 9 C 0.358 3.642 10 N -0.475 5.475 11 C 0.099 3.901 12 C 0.011 3.989 13 N -0.432 5.432 14 C 0.195 3.805 15 F -0.110 7.110 16 N -0.731 5.731 17 C 0.532 3.468 18 O -0.519 6.519 19 C -0.124 4.124 20 S -0.142 6.142 21 C -0.521 4.521 22 H 0.088 0.912 23 C 0.097 3.903 24 N -0.880 5.880 25 Si 0.855 3.145 26 H -0.267 1.267 27 H -0.274 1.274 28 H -0.236 1.236 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.061 0.939 35 H 0.055 0.945 36 H 0.067 0.933 37 H 0.412 0.588 38 H 0.179 0.821 39 H 0.176 0.824 40 H 0.398 0.602 41 H 0.095 0.905 42 H 0.096 0.904 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.269 -1.677 25.472 25.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.037 3.963 3 H 0.106 0.894 4 C -0.176 4.176 5 C 0.045 3.955 6 H 0.115 0.885 7 C -0.221 4.221 8 N -0.336 5.336 9 C 0.115 3.885 10 N -0.198 5.198 11 C -0.061 4.061 12 C -0.148 4.148 13 N -0.150 5.150 14 C 0.029 3.971 15 F -0.089 7.089 16 N -0.385 5.385 17 C 0.318 3.682 18 O -0.393 6.393 19 C -0.274 4.274 20 S 0.084 5.916 21 C -0.669 4.669 22 H 0.106 0.894 23 C -0.112 4.112 24 N -0.517 5.517 25 Si 0.680 3.320 26 H -0.192 1.192 27 H -0.199 1.199 28 H -0.160 1.160 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.107 0.893 33 H 0.102 0.898 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.086 0.914 37 H 0.250 0.750 38 H 0.196 0.804 39 H 0.193 0.807 40 H 0.232 0.768 41 H 0.113 0.887 42 H 0.114 0.886 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.754 0.092 25.177 25.188 hybrid contribution 0.071 -0.712 -0.164 0.734 sum 0.825 -0.620 25.012 25.034 Atomic orbital electron populations 1.22188 0.95221 1.02152 1.02699 1.20883 0.93954 0.97736 0.83684 0.89448 1.22270 0.94436 1.02598 0.98265 1.21036 0.94113 0.80279 1.00050 0.88497 1.22196 1.02073 0.99872 0.97930 1.44645 1.12528 1.11335 1.65053 1.19041 0.88826 0.88046 0.92584 1.68091 1.03552 1.34895 1.13281 1.23578 0.92297 0.95886 0.94294 1.23199 1.00150 0.90514 1.00982 1.67578 1.01188 1.38442 1.07828 1.18405 0.89339 0.85338 1.03987 1.91600 1.66343 1.69122 1.81884 1.46032 1.69203 1.13830 1.09455 1.20256 0.76839 0.87214 0.83866 1.90697 1.48429 1.15764 1.84439 1.23275 1.04368 1.03444 0.96360 1.84805 1.87173 1.16857 1.02734 1.22313 1.50376 0.98783 0.95387 0.89411 1.24693 0.93346 0.98211 0.94940 1.69940 1.43419 1.35778 1.02574 0.86754 0.81132 0.84929 0.79159 1.19211 1.19903 1.15968 0.92423 0.91924 0.91648 0.89334 0.89790 0.92007 0.92625 0.91437 0.75038 0.80420 0.80679 0.76836 0.88665 0.88554 0.91945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.57 9.48 37.15 0.35 -1.22 16 2 C 0.14 1.42 2.52 -67.93 -0.17 1.25 16 3 H 0.09 1.10 7.06 -51.93 -0.37 0.73 16 4 C -0.14 -0.87 4.29 -26.73 -0.11 -0.98 16 5 C 0.15 1.17 2.54 -67.93 -0.17 1.00 16 6 H 0.10 0.95 7.04 -51.93 -0.37 0.58 16 7 C -0.16 -1.06 9.50 37.16 0.35 -0.71 16 8 N -0.70 -6.50 4.60 -53.72 -0.25 -6.75 16 9 C 0.36 4.18 7.48 -154.58 -1.16 3.03 16 10 N -0.48 -5.46 9.38 -12.17 -0.11 -5.57 16 11 C 0.10 0.95 11.21 -17.41 -0.20 0.75 16 12 C 0.01 0.11 11.21 -17.39 -0.19 -0.08 16 13 N -0.43 -5.62 10.50 -13.24 -0.14 -5.76 16 14 C 0.20 2.52 8.47 -16.93 -0.14 2.38 16 15 F -0.11 -1.40 16.68 2.25 0.04 -1.36 16 16 N -0.73 -8.69 4.45 -53.81 -0.24 -8.93 16 17 C 0.53 9.29 7.81 -10.99 -0.09 9.21 16 18 O -0.52 -11.13 15.52 5.56 0.09 -11.05 16 19 C -0.12 -2.39 6.16 36.00 0.22 -2.17 16 20 S -0.14 -3.62 18.55 -107.50 -1.99 -5.62 16 21 C -0.52 -15.04 10.04 30.94 0.31 -14.73 16 22 H 0.09 2.64 8.03 -52.49 -0.42 2.21 16 23 C 0.10 2.84 5.50 -17.43 -0.10 2.74 16 24 N -0.88 -26.58 13.97 55.49 0.78 -25.81 16 25 Si 0.86 21.95 27.74 -169.99 -4.72 17.23 16 26 H -0.27 -6.79 7.11 56.52 0.40 -6.38 16 27 H -0.27 -6.75 7.11 56.52 0.40 -6.34 16 28 H -0.24 -6.06 6.74 56.52 0.38 -5.68 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.08 0.41 8.14 -51.92 -0.42 -0.02 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 36 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.41 3.31 8.09 -40.82 -0.33 2.98 16 38 H 0.18 1.09 8.06 -52.49 -0.42 0.66 16 39 H 0.18 1.15 8.06 -52.49 -0.42 0.72 16 40 H 0.40 3.64 8.60 -40.82 -0.35 3.29 16 41 H 0.10 1.73 8.14 -51.92 -0.42 1.31 16 42 H 0.10 1.73 8.14 -51.91 -0.42 1.30 16 43 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 383.20 15.07 5.77 5.77 Total: -1.00 -36.35 383.20 -7.93 -44.28 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -6.06 Total: 3.09 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: -1.09 Total: 0.46 kcal Atomic # 7 Polarization: -52.85 SS G_CDS: 0.04 Total: -52.82 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: 0.09 Total: -11.05 kcal Atomic # 9 Polarization: -1.40 SS G_CDS: 0.04 Total: -1.36 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.72 Total: 17.23 kcal Atomic # 16 Polarization: -3.62 SS G_CDS: -1.99 Total: -5.62 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -36.35 -7.93 -44.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089248973.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.360 kcal (2) G-P(sol) polarization free energy of solvation -36.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds