Wall clock time and date at job start Wed Apr 1 2020 02:53:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 5 5 C 1.52999 * 109.47054 * 174.99886 * 4 2 1 6 6 H 1.08997 * 109.47369 * 304.99623 * 5 4 2 7 7 C 1.52998 * 109.47162 * 184.99817 * 5 4 2 8 8 N 1.46503 * 109.47223 * 64.99930 * 5 4 2 9 9 C 1.34777 * 120.00139 * 204.99888 * 8 5 4 10 10 O 1.21284 * 119.99928 * 359.97438 * 9 8 5 11 11 C 1.50701 * 120.00148 * 179.97438 * 9 8 5 12 12 S 1.81001 * 109.46948 * 180.02562 * 11 9 8 13 13 C 1.76204 * 99.99765 * 180.02562 * 12 11 9 14 14 H 1.08000 * 120.00125 * 0.02562 * 13 12 11 15 15 C 1.38796 * 119.99510 * 179.97438 * 13 12 11 16 16 N 1.31621 * 120.00683 * 0.02562 * 15 13 12 17 17 Si 1.86807 * 119.99539 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47022 * 60.00320 * 17 15 13 19 19 H 1.48501 * 109.46958 * 180.02562 * 17 15 13 20 20 H 1.48492 * 109.47302 * 300.00503 * 17 15 13 21 21 N 1.46500 * 109.47473 * 120.00128 * 2 1 3 22 22 C 1.39112 * 120.00091 * 275.00427 * 21 2 1 23 23 N 1.32572 * 120.10973 * 359.71918 * 22 21 2 24 24 C 1.32305 * 119.93848 * 179.69971 * 23 22 21 25 25 C 1.38064 * 120.17040 * 0.60256 * 24 23 22 26 26 N 1.32344 * 120.21731 * 359.67775 * 25 24 23 27 27 C 1.32069 * 120.05891 * 0.02562 * 26 25 24 28 28 F 1.35104 * 120.08303 * 179.97438 * 27 26 25 29 29 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 30 30 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 32 32 H 1.08995 * 109.46750 * 294.99553 * 4 2 1 33 33 H 1.09001 * 109.47326 * 54.99931 * 4 2 1 34 34 H 1.09001 * 109.47299 * 300.00122 * 7 5 4 35 35 H 1.08999 * 109.47267 * 59.99499 * 7 5 4 36 36 H 1.08996 * 109.47643 * 180.02562 * 7 5 4 37 37 H 0.97000 * 119.99900 * 24.99911 * 8 5 4 38 38 H 1.09000 * 109.47188 * 300.00078 * 11 9 8 39 39 H 1.09000 * 109.46595 * 60.00141 * 11 9 8 40 40 H 0.97005 * 120.00462 * 179.97438 * 16 15 13 41 41 H 0.97001 * 119.99547 * 95.00125 * 21 2 1 42 42 H 1.07998 * 119.91262 * 180.29695 * 24 23 22 43 43 H 1.07999 * 119.89016 * 179.69349 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 3.5648 -0.6132 -1.3138 6 1 3.8570 0.4359 -1.2679 7 6 4.0645 -1.2248 -2.6241 8 7 4.1537 -1.3341 -0.1825 9 6 5.3748 -0.9911 0.2732 10 8 5.9863 -0.0857 -0.2535 11 6 5.9803 -1.7323 1.4372 12 16 7.6118 -1.0423 1.8090 13 6 8.0745 -2.0653 3.1670 14 1 7.4037 -2.8369 3.5149 15 6 9.3015 -1.8802 3.7888 16 7 10.1192 -0.9402 3.3645 17 14 9.7916 -2.9643 5.2289 18 1 9.8210 -4.3835 4.7926 19 1 11.1383 -2.5665 5.7121 20 1 8.8051 -2.8045 6.3271 21 7 2.0184 -0.6906 1.1961 22 6 2.1512 0.0033 2.3945 23 7 1.8417 1.2910 2.4552 24 6 1.9637 1.9462 3.5981 25 6 2.4244 1.2954 4.7253 26 7 2.7405 0.0115 4.6706 27 6 2.6166 -0.6526 3.5358 28 9 2.9396 -1.9632 3.4793 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 -0.8900 32 1 1.7517 -1.7714 -1.2057 33 1 1.6054 -0.2616 -2.1371 34 1 3.7723 -2.2739 -2.6701 35 1 3.6263 -0.6885 -3.4658 36 1 5.1508 -1.1483 -2.6699 37 1 3.6648 -2.0584 0.2384 38 1 5.3350 -1.6285 2.3095 39 1 6.0809 -2.7875 1.1832 40 1 10.9766 -0.8106 3.7993 41 1 2.2491 -1.6318 1.1525 42 1 1.7069 2.9940 3.6482 43 1 2.5269 1.8359 5.6546 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089248974.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:53:07 Heat of formation + Delta-G solvation = -24.504041 kcal Electronic energy + Delta-G solvation = -28361.423476 eV Core-core repulsion = 24290.006292 eV Total energy + Delta-G solvation = -4071.417184 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.127 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.02128 -41.04211 -39.66115 -37.80445 -35.35132 -33.88913 -32.67712 -32.38567 -31.15838 -29.23868 -28.47743 -27.06461 -25.43715 -24.82440 -23.89858 -21.95855 -21.31378 -20.30183 -18.59662 -18.05151 -17.87711 -17.70359 -16.55358 -16.34710 -16.20228 -15.63950 -15.18221 -14.91517 -14.76078 -14.33119 -14.11129 -14.08644 -14.01063 -13.72144 -13.33032 -13.18537 -12.92273 -12.80213 -12.64956 -12.38638 -12.29043 -11.95636 -11.89344 -11.71663 -11.37839 -11.06850 -11.00125 -10.99649 -10.96912 -10.72480 -10.30213 -9.78719 -9.37812 -9.34460 -9.02297 -8.91195 -8.21385 -7.97982 -6.46285 -6.17477 -3.87790 0.68665 1.05171 2.63504 3.05993 3.11018 3.27640 3.30595 3.34145 3.40331 3.54873 3.73470 4.04939 4.15736 4.24602 4.26938 4.56997 4.81004 4.93929 5.02406 5.07706 5.13766 5.17866 5.21083 5.27333 5.35467 5.36198 5.44186 5.49490 5.60132 5.67279 5.67896 5.90341 5.91104 5.99003 6.09614 6.16317 6.18706 6.64083 6.69425 6.78232 7.28767 7.63903 7.65860 7.67503 8.39897 8.62029 9.28181 10.89959 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.010555 B = 0.004140 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2652.149738 B = 6762.008819 C = 8537.104476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.153 3.847 3 H 0.095 0.905 4 C -0.137 4.137 5 C 0.144 3.856 6 H 0.089 0.911 7 C -0.164 4.164 8 N -0.730 5.730 9 C 0.534 3.466 10 O -0.516 6.516 11 C -0.153 4.153 12 S -0.058 6.058 13 C -0.533 4.533 14 H 0.072 0.928 15 C 0.075 3.925 16 N -0.869 5.869 17 Si 0.917 3.083 18 H -0.274 1.274 19 H -0.283 1.283 20 H -0.273 1.273 21 N -0.700 5.700 22 C 0.356 3.644 23 N -0.477 5.477 24 C 0.093 3.907 25 C 0.014 3.986 26 N -0.426 5.426 27 C 0.201 3.799 28 F -0.108 7.108 29 H 0.061 0.939 30 H 0.054 0.946 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.096 0.904 34 H 0.055 0.945 35 H 0.062 0.938 36 H 0.065 0.935 37 H 0.389 0.611 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.268 0.732 41 H 0.407 0.593 42 H 0.176 0.824 43 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.527 2.072 -6.468 24.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.048 3.952 3 H 0.113 0.887 4 C -0.175 4.175 5 C 0.039 3.961 6 H 0.107 0.893 7 C -0.222 4.222 8 N -0.386 5.386 9 C 0.320 3.680 10 O -0.390 6.390 11 C -0.304 4.304 12 S 0.168 5.832 13 C -0.682 4.682 14 H 0.090 0.910 15 C -0.134 4.134 16 N -0.505 5.505 17 Si 0.743 3.257 18 H -0.199 1.199 19 H -0.208 1.208 20 H -0.198 1.198 21 N -0.335 5.335 22 C 0.114 3.886 23 N -0.200 5.200 24 C -0.067 4.067 25 C -0.146 4.146 26 N -0.145 5.145 27 C 0.035 3.965 28 F -0.087 7.087 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.085 0.915 32 H 0.092 0.908 33 H 0.115 0.885 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.223 0.777 38 H 0.103 0.897 39 H 0.107 0.893 40 H 0.078 0.922 41 H 0.246 0.754 42 H 0.193 0.807 43 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -22.372 3.754 -7.507 23.895 hybrid contribution -0.362 -2.762 1.860 3.349 sum -22.735 0.992 -5.647 23.446 Atomic orbital electron populations 1.22194 0.95252 1.02004 1.02568 1.21007 0.93614 0.97790 0.82757 0.88741 1.22282 0.95207 1.01826 0.98206 1.20895 0.91180 0.98019 0.86048 0.89271 1.22182 1.02792 1.00732 0.96488 1.46189 1.19168 1.38226 1.35029 1.20278 0.80400 0.83393 0.83895 1.90694 1.60327 1.29644 1.58302 1.23533 1.05612 1.03249 0.98024 1.85331 1.08781 1.47110 1.41957 1.22822 1.05872 1.21126 1.18348 0.91017 1.24963 0.95296 0.95680 0.97480 1.70005 1.09393 1.30688 1.40370 0.86252 0.77750 0.80235 0.81476 1.19922 1.20812 1.19848 1.44727 1.70529 1.12101 1.06127 1.19010 0.93095 0.89940 0.86599 1.68052 1.19621 1.04728 1.27637 1.23503 0.94382 1.01110 0.87696 1.23194 1.01287 0.89196 1.00926 1.67607 1.11701 1.09923 1.25250 1.18435 1.05591 0.81414 0.91032 1.91619 1.90488 1.30338 1.96257 0.92026 0.92651 0.91534 0.90750 0.88513 0.92624 0.91881 0.91589 0.77665 0.89706 0.89349 0.92191 0.75385 0.80670 0.80794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.09 9.50 37.16 0.35 -0.74 16 2 C 0.15 1.26 2.60 -67.93 -0.18 1.08 16 3 H 0.09 0.96 7.55 -51.93 -0.39 0.57 16 4 C -0.14 -0.92 4.43 -26.73 -0.12 -1.04 16 5 C 0.14 1.52 2.57 -67.93 -0.17 1.34 16 6 H 0.09 1.17 7.58 -51.93 -0.39 0.78 16 7 C -0.16 -1.65 9.48 37.16 0.35 -1.29 16 8 N -0.73 -9.34 3.80 -53.81 -0.20 -9.55 16 9 C 0.53 10.02 7.81 -10.98 -0.09 9.93 16 10 O -0.52 -11.72 15.53 5.55 0.09 -11.64 16 11 C -0.15 -3.24 6.16 36.01 0.22 -3.01 16 12 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 13 C -0.53 -15.68 9.50 30.94 0.29 -15.38 16 14 H 0.07 2.02 7.80 -52.49 -0.41 1.61 16 15 C 0.07 2.19 5.49 -17.44 -0.10 2.10 16 16 N -0.87 -26.73 13.22 55.49 0.73 -26.00 16 17 Si 0.92 22.07 29.55 -169.99 -5.02 17.04 16 18 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 20 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 21 N -0.70 -6.96 3.95 -53.73 -0.21 -7.17 16 22 C 0.36 4.51 7.48 -154.58 -1.16 3.35 16 23 N -0.48 -5.74 9.38 -12.17 -0.11 -5.85 16 24 C 0.09 0.94 11.21 -17.41 -0.20 0.74 16 25 C 0.01 0.16 11.21 -17.39 -0.19 -0.04 16 26 N -0.43 -6.44 10.50 -13.24 -0.14 -6.58 16 27 C 0.20 2.96 8.47 -16.93 -0.14 2.82 16 28 F -0.11 -1.61 16.68 2.25 0.04 -1.57 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.39 4.01 6.51 -40.82 -0.27 3.75 16 38 H 0.08 1.75 8.14 -51.92 -0.42 1.33 16 39 H 0.09 1.73 8.14 -51.92 -0.42 1.31 16 40 H 0.27 7.69 8.31 -40.82 -0.34 7.35 16 41 H 0.41 3.64 6.00 -40.82 -0.24 3.39 16 42 H 0.18 1.07 8.06 -52.49 -0.42 0.65 16 43 H 0.18 1.38 8.06 -52.49 -0.42 0.96 16 LS Contribution 381.69 15.07 5.75 5.75 Total: -1.00 -37.25 381.69 -8.33 -45.58 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -5.91 Total: 3.97 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: -1.12 Total: -0.15 kcal Atomic # 7 Polarization: -55.21 SS G_CDS: 0.06 Total: -55.15 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: 0.09 Total: -11.64 kcal Atomic # 9 Polarization: -1.61 SS G_CDS: 0.04 Total: -1.57 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.04 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -37.25 -8.33 -45.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089248974.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.075 kcal (2) G-P(sol) polarization free energy of solvation -37.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds