Wall clock time and date at job start Wed Apr 1 2020 02:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09002 * 109.47258 * 2 1 4 4 C 1.53002 * 109.47479 * 240.00009 * 2 1 3 5 5 C 1.53001 * 109.47548 * 175.00053 * 4 2 1 6 6 H 1.09004 * 109.46745 * 304.99733 * 5 4 2 7 7 C 1.53001 * 109.47263 * 184.99994 * 5 4 2 8 8 N 1.46501 * 109.46884 * 64.99567 * 5 4 2 9 9 C 1.39123 * 119.99551 * 204.99779 * 8 5 4 10 10 N 1.32557 * 120.11071 * 359.97438 * 9 8 5 11 11 C 1.32313 * 119.94358 * 180.02562 * 10 9 8 12 12 C 1.38064 * 120.16452 * 359.97438 * 11 10 9 13 13 N 1.32354 * 120.21924 * 0.02562 * 12 11 10 14 14 C 1.32066 * 120.05744 * 0.02562 * 13 12 11 15 15 F 1.35096 * 120.08422 * 180.02562 * 14 13 12 16 16 N 1.46500 * 109.47584 * 119.99967 * 2 1 3 17 17 C 1.34778 * 119.99808 * 275.00446 * 16 2 1 18 18 O 1.21280 * 120.00037 * 359.97438 * 17 16 2 19 19 C 1.50697 * 119.99830 * 179.97438 * 17 16 2 20 20 S 1.81005 * 109.47047 * 179.97438 * 19 17 16 21 21 C 1.76200 * 100.00121 * 180.02562 * 20 19 17 22 22 H 1.08004 * 119.99938 * 0.02562 * 21 20 19 23 23 C 1.38795 * 120.00099 * 180.02562 * 21 20 19 24 24 N 1.31631 * 119.99883 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 120.00173 * 179.97438 * 23 21 20 26 26 H 1.48509 * 109.46786 * 359.97438 * 25 23 21 27 27 H 1.48497 * 109.47337 * 119.99743 * 25 23 21 28 28 H 1.48503 * 109.47272 * 240.00291 * 25 23 21 29 29 H 1.09001 * 109.47421 * 60.00226 * 1 2 3 30 30 H 1.09007 * 109.46932 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47779 * 299.99709 * 1 2 3 32 32 H 1.09000 * 109.47346 * 54.99499 * 4 2 1 33 33 H 1.09009 * 109.47046 * 294.99863 * 4 2 1 34 34 H 1.08998 * 109.46604 * 299.99707 * 7 5 4 35 35 H 1.09001 * 109.46858 * 59.99740 * 7 5 4 36 36 H 1.08996 * 109.46694 * 179.97438 * 7 5 4 37 37 H 0.96996 * 120.00222 * 25.00853 * 8 5 4 38 38 H 1.07991 * 119.91927 * 180.02562 * 11 10 9 39 39 H 1.07995 * 119.88791 * 180.28255 * 12 11 10 40 40 H 0.96996 * 119.99982 * 94.99375 * 16 2 1 41 41 H 1.09002 * 109.47156 * 299.99869 * 19 17 16 42 42 H 1.09002 * 109.47172 * 60.00209 * 19 17 16 43 43 H 0.97006 * 119.99622 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5648 -0.6133 -1.3137 6 1 3.8570 0.4358 -1.2678 7 6 4.0645 -1.2250 -2.6240 8 7 4.1536 -1.3341 -0.1823 9 6 5.4141 -0.9799 0.2880 10 7 6.0844 0.0091 -0.2862 11 6 7.2832 0.3429 0.1635 12 6 7.8379 -0.3361 1.2300 13 7 7.1743 -1.3246 1.8082 14 6 5.9776 -1.6657 1.3658 15 9 5.2996 -2.6743 1.9559 16 7 2.0184 -0.6906 1.1961 17 6 2.1470 -0.0182 2.3571 18 8 1.8589 1.1586 2.4115 19 6 2.6489 -0.7287 3.5877 20 16 2.7106 0.4346 4.9730 21 6 3.3138 -0.6306 6.2404 22 1 3.5232 -1.6670 6.0204 23 6 3.5199 -0.1377 7.5214 24 7 3.2652 1.1256 7.7894 25 14 4.1587 -1.2671 8.8652 26 1 4.3638 -2.6294 8.3108 27 1 5.4488 -0.7427 9.3809 28 1 3.1708 -1.3274 9.9724 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8899 32 1 1.6054 -0.2618 -2.1370 33 1 1.7517 -1.7716 -1.2056 34 1 3.7723 -2.2741 -2.6698 35 1 3.6264 -0.6887 -3.4657 36 1 5.1508 -1.1477 -2.6701 37 1 3.6648 -2.0584 0.2387 38 1 7.8288 1.1489 -0.3043 39 1 8.8147 -0.0569 1.5964 40 1 2.2490 -1.6317 1.1526 41 1 1.9761 -1.5506 3.8325 42 1 3.6481 -1.1211 3.3985 43 1 3.4089 1.4700 8.6848 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089248975.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:53:11 Heat of formation + Delta-G solvation = -24.589715 kcal Electronic energy + Delta-G solvation = -28360.858550 eV Core-core repulsion = 24289.437651 eV Total energy + Delta-G solvation = -4071.420899 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.127 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.02355 -41.04237 -39.66201 -37.80470 -35.35172 -33.88936 -32.67706 -32.38740 -31.15877 -29.23954 -28.47811 -27.06459 -25.44222 -24.82448 -23.89921 -21.95880 -21.31377 -20.30204 -18.59725 -18.05170 -17.87930 -17.70621 -16.55210 -16.34922 -16.20394 -15.63925 -15.18296 -14.91614 -14.76407 -14.33161 -14.11270 -14.08923 -14.01275 -13.72112 -13.33169 -13.18525 -12.92414 -12.80267 -12.65181 -12.38606 -12.29179 -11.95585 -11.89308 -11.71875 -11.37836 -11.06901 -11.03173 -10.97999 -10.96772 -10.71263 -10.30159 -9.76978 -9.37911 -9.34543 -9.04052 -8.91333 -8.20666 -7.98078 -6.46446 -6.18137 -3.88146 0.68614 1.05099 2.63440 3.05954 3.10967 3.24961 3.31043 3.35848 3.40623 3.54762 3.73499 4.04926 4.15668 4.24064 4.26889 4.57007 4.80954 4.93890 5.02387 5.07682 5.13771 5.17469 5.21048 5.27340 5.35454 5.36160 5.44181 5.49457 5.60064 5.67275 5.67801 5.90294 5.91159 5.98967 6.09566 6.16254 6.18636 6.64053 6.69387 6.78184 7.28677 7.64207 7.65890 7.67478 8.40058 8.61988 9.27920 10.89425 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.010554 B = 0.004139 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2652.289374 B = 6762.991899 C = 8538.462660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.143 3.857 3 H 0.089 0.911 4 C -0.137 4.137 5 C 0.153 3.847 6 H 0.094 0.906 7 C -0.162 4.162 8 N -0.700 5.700 9 C 0.356 3.644 10 N -0.477 5.477 11 C 0.093 3.907 12 C 0.014 3.986 13 N -0.426 5.426 14 C 0.201 3.799 15 F -0.107 7.107 16 N -0.730 5.730 17 C 0.534 3.466 18 O -0.516 6.516 19 C -0.153 4.153 20 S -0.059 6.059 21 C -0.532 4.532 22 H 0.073 0.927 23 C 0.074 3.926 24 N -0.869 5.869 25 Si 0.917 3.083 26 H -0.271 1.271 27 H -0.280 1.280 28 H -0.280 1.280 29 H 0.062 0.938 30 H 0.055 0.945 31 H 0.065 0.935 32 H 0.096 0.904 33 H 0.074 0.926 34 H 0.054 0.946 35 H 0.066 0.934 36 H 0.061 0.939 37 H 0.407 0.593 38 H 0.176 0.824 39 H 0.175 0.825 40 H 0.389 0.611 41 H 0.088 0.912 42 H 0.085 0.915 43 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.964 -5.923 -23.585 24.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.039 3.961 3 H 0.107 0.893 4 C -0.175 4.175 5 C 0.048 3.952 6 H 0.113 0.887 7 C -0.220 4.220 8 N -0.335 5.335 9 C 0.114 3.886 10 N -0.201 5.201 11 C -0.067 4.067 12 C -0.146 4.146 13 N -0.145 5.145 14 C 0.035 3.965 15 F -0.087 7.087 16 N -0.386 5.386 17 C 0.320 3.680 18 O -0.390 6.390 19 C -0.304 4.304 20 S 0.167 5.833 21 C -0.680 4.680 22 H 0.091 0.909 23 C -0.135 4.135 24 N -0.504 5.504 25 Si 0.743 3.257 26 H -0.195 1.195 27 H -0.205 1.205 28 H -0.206 1.206 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.115 0.885 33 H 0.092 0.908 34 H 0.074 0.926 35 H 0.085 0.915 36 H 0.080 0.920 37 H 0.246 0.754 38 H 0.193 0.807 39 H 0.192 0.808 40 H 0.223 0.777 41 H 0.107 0.893 42 H 0.103 0.897 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.373 -3.727 -23.504 23.916 hybrid contribution 0.605 -3.032 1.244 3.332 sum 2.978 -6.759 -22.260 23.453 Atomic orbital electron populations 1.22181 0.95255 1.02008 1.02747 1.20895 0.93936 0.97773 0.83541 0.89273 1.22283 0.94412 1.01984 0.98845 1.21007 0.91688 0.97665 0.84801 0.88749 1.22194 1.02179 1.00926 0.96721 1.44730 1.14349 1.38687 1.35723 1.19010 0.88421 0.91215 0.89992 1.68048 1.08557 1.13499 1.29947 1.23503 0.90593 0.98367 0.94221 1.23196 1.01665 0.93756 0.95997 1.67610 1.05251 1.14520 1.27098 1.18436 0.91455 0.92029 0.94550 1.91617 1.77105 1.56696 1.83277 1.46188 1.69420 1.13275 1.09730 1.20276 0.76728 0.87236 0.83726 1.90693 1.48233 1.15671 1.84367 1.23533 1.03431 1.04870 0.98576 1.85337 1.86216 1.12942 0.98759 1.22905 1.50703 0.98157 0.96254 0.90912 1.24972 0.95077 0.95517 0.97927 1.70033 1.45827 1.13210 1.21368 0.86137 0.78526 0.80289 0.80708 1.19541 1.20536 1.20584 0.91884 0.92620 0.91587 0.88515 0.90750 0.92650 0.91535 0.92020 0.75384 0.80669 0.80792 0.77664 0.89346 0.89702 0.92309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.64 9.48 37.15 0.35 -1.29 16 2 C 0.14 1.52 2.57 -67.93 -0.17 1.34 16 3 H 0.09 1.17 7.58 -51.93 -0.39 0.78 16 4 C -0.14 -0.92 4.43 -26.73 -0.12 -1.04 16 5 C 0.15 1.26 2.60 -67.93 -0.18 1.08 16 6 H 0.09 0.96 7.56 -51.93 -0.39 0.57 16 7 C -0.16 -1.10 9.50 37.16 0.35 -0.74 16 8 N -0.70 -6.96 3.95 -53.72 -0.21 -7.17 16 9 C 0.36 4.51 7.48 -154.58 -1.16 3.35 16 10 N -0.48 -5.73 9.38 -12.17 -0.11 -5.84 16 11 C 0.09 0.94 11.21 -17.41 -0.20 0.74 16 12 C 0.01 0.15 11.21 -17.39 -0.19 -0.04 16 13 N -0.43 -6.43 10.50 -13.24 -0.14 -6.57 16 14 C 0.20 2.96 8.47 -16.93 -0.14 2.82 16 15 F -0.11 -1.61 16.68 2.25 0.04 -1.57 16 16 N -0.73 -9.34 3.80 -53.81 -0.20 -9.54 16 17 C 0.53 10.01 7.81 -10.99 -0.09 9.93 16 18 O -0.52 -11.72 15.52 5.56 0.09 -11.63 16 19 C -0.15 -3.23 6.16 36.00 0.22 -3.01 16 20 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 21 C -0.53 -15.63 9.50 30.94 0.29 -15.33 16 22 H 0.07 2.06 7.80 -52.48 -0.41 1.65 16 23 C 0.07 2.17 5.49 -17.43 -0.10 2.07 16 24 N -0.87 -26.71 13.22 55.49 0.73 -25.98 16 25 Si 0.92 22.08 29.55 -169.99 -5.02 17.06 16 26 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 27 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 28 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.41 8.14 -51.92 -0.42 -0.01 16 34 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.41 3.64 6.00 -40.82 -0.24 3.40 16 38 H 0.18 1.07 8.06 -52.49 -0.42 0.65 16 39 H 0.18 1.38 8.06 -52.49 -0.42 0.95 16 40 H 0.39 4.01 6.51 -40.82 -0.27 3.75 16 41 H 0.09 1.73 8.14 -51.92 -0.42 1.31 16 42 H 0.08 1.76 8.14 -51.91 -0.42 1.33 16 43 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 381.69 15.07 5.75 5.75 Total: -1.00 -37.27 381.69 -8.33 -45.60 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -5.91 Total: 3.89 kcal Atomic # 6 Polarization: 0.99 SS G_CDS: -1.12 Total: -0.13 kcal Atomic # 7 Polarization: -55.17 SS G_CDS: 0.06 Total: -55.10 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: 0.09 Total: -11.63 kcal Atomic # 9 Polarization: -1.61 SS G_CDS: 0.04 Total: -1.57 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -37.27 -8.33 -45.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089248975.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.013 kcal (2) G-P(sol) polarization free energy of solvation -37.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds