Wall clock time and date at job start Wed Apr 1 2020 00:22:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50707 * 109.46732 * 2 1 4 4 N 1.32605 * 120.41268 * 90.00138 * 3 2 1 5 5 C 1.31724 * 121.02547 * 179.97438 * 4 3 2 6 6 N 1.31803 * 121.88172 * 0.02562 * 5 4 3 7 7 C 1.32905 * 120.71134 * 359.97438 * 6 5 4 8 8 N 1.38674 * 120.54174 * 180.02562 * 7 6 5 9 9 C 1.46498 * 120.00157 * 359.97438 * 8 7 6 10 10 H 1.09001 * 109.47344 * 325.00484 * 9 8 7 11 11 C 1.53002 * 109.46991 * 85.00715 * 9 8 7 12 12 C 1.53002 * 109.47250 * 205.00276 * 9 8 7 13 13 N 1.46505 * 109.46933 * 55.00072 * 12 9 8 14 14 C 1.34774 * 119.99826 * 180.02562 * 13 12 9 15 15 O 1.21284 * 120.00109 * 0.02562 * 14 13 12 16 16 C 1.50700 * 120.00181 * 180.02562 * 14 13 12 17 17 S 1.81001 * 109.47396 * 179.97438 * 16 14 13 18 18 C 1.76198 * 99.99804 * 179.97438 * 17 16 14 19 19 H 1.07995 * 120.00072 * 359.97438 * 18 17 16 20 20 C 1.38801 * 119.99686 * 179.97438 * 18 17 16 21 21 N 1.31622 * 120.00128 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00015 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46850 * 0.02562 * 22 20 18 24 24 H 1.48494 * 109.47020 * 119.99978 * 22 20 18 25 25 H 1.48493 * 109.47205 * 240.00429 * 22 20 18 26 26 C 1.38235 * 120.41495 * 269.97416 * 3 2 1 27 27 F 1.35103 * 120.85234 * 0.02562 * 26 3 2 28 28 H 1.08994 * 109.47511 * 299.99782 * 1 2 3 29 29 H 1.08999 * 109.47475 * 60.00283 * 1 2 3 30 30 H 1.09004 * 109.46663 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47361 * 240.00509 * 2 1 3 32 32 H 1.08999 * 109.47475 * 119.99717 * 2 1 3 33 33 H 1.07996 * 119.05487 * 180.02562 * 5 4 3 34 34 H 0.97005 * 119.99874 * 180.02562 * 8 7 6 35 35 H 1.09005 * 109.46587 * 300.00054 * 11 9 8 36 36 H 1.08994 * 109.47464 * 59.99438 * 11 9 8 37 37 H 1.08998 * 109.47250 * 180.02562 * 11 9 8 38 38 H 1.08992 * 109.46958 * 175.00136 * 12 9 8 39 39 H 1.09001 * 109.46815 * 295.00381 * 12 9 8 40 40 H 0.96999 * 119.99931 * 359.97438 * 13 12 9 41 41 H 1.09001 * 109.46947 * 300.00242 * 16 14 13 42 42 H 1.08993 * 109.47000 * 59.99491 * 16 14 13 43 43 H 0.96996 * 120.00275 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 7 2.2560 2.0538 1.1436 5 6 2.6954 3.2955 1.1577 6 7 2.9314 3.9631 0.0460 7 6 2.7317 3.3982 -1.1404 8 7 2.9817 4.1037 -2.3078 9 6 3.4694 5.4834 -2.2397 10 1 3.0213 5.9854 -1.3822 11 6 4.9920 5.4793 -2.0900 12 6 3.0851 6.2241 -3.5222 13 7 1.6380 6.1255 -3.7281 14 6 1.0691 6.7068 -4.8028 15 8 1.7552 7.3110 -5.5997 16 6 -0.4196 6.6060 -5.0143 17 16 -0.8742 7.4820 -6.5316 18 6 -2.6149 7.2093 -6.5324 19 1 -3.0727 6.6402 -5.7369 20 6 -3.3978 7.7259 -7.5556 21 7 -2.8397 8.4191 -8.5254 22 14 -5.2432 7.4362 -7.5569 23 1 -5.6189 6.6329 -6.3658 24 1 -5.9492 8.7420 -7.5156 25 1 -5.6284 6.7040 -8.7900 26 6 2.2660 2.0805 -1.1921 27 9 2.0495 1.4682 -2.3768 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 2.8672 3.7803 2.1073 34 1 2.8328 3.6838 -3.1695 35 1 5.2658 4.9516 -1.1763 36 1 5.4401 4.9774 -2.9475 37 1 5.3549 6.5058 -2.0389 38 1 3.3692 7.2727 -3.4351 39 1 3.6040 5.7762 -4.3697 40 1 1.0894 5.6413 -3.0913 41 1 -0.7041 5.5573 -5.1007 42 1 -0.9381 7.0544 -4.1670 43 1 -3.3867 8.7798 -9.2406 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001097674280.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:22:09 Heat of formation + Delta-G solvation = -43.124858 kcal Electronic energy + Delta-G solvation = -26642.264270 eV Core-core repulsion = 22570.039627 eV Total energy + Delta-G solvation = -4072.224643 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.127 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.25444 -41.29973 -39.45513 -37.82895 -35.41301 -34.19075 -32.62683 -32.45133 -31.48875 -29.80970 -29.34368 -26.10481 -25.47030 -25.28910 -24.31980 -22.47951 -21.30097 -20.41416 -18.86577 -18.31192 -17.83205 -17.67926 -16.59271 -16.32778 -16.28206 -15.95331 -15.39048 -14.94863 -14.82626 -14.59496 -14.53782 -14.25875 -14.14850 -13.79097 -13.61537 -13.35355 -13.12401 -12.96912 -12.90322 -12.60474 -12.34405 -12.04173 -11.86403 -11.80071 -11.58139 -11.41280 -11.25107 -11.08740 -11.04502 -10.77609 -10.06354 -9.83380 -9.56478 -9.49567 -9.10769 -9.01485 -8.53274 -8.26907 -6.53080 -6.24203 -3.94956 0.44242 0.78749 2.42172 2.96839 3.01861 3.20089 3.26260 3.30561 3.32076 3.49240 3.64271 3.65824 3.81314 4.17967 4.26111 4.31057 4.48808 4.75277 4.84659 4.86519 4.89349 5.06215 5.09184 5.11205 5.23253 5.27310 5.39882 5.47047 5.47637 5.54713 5.59758 5.69216 5.77444 5.83162 5.84164 5.95457 6.09607 6.25009 6.46985 6.55209 7.03206 7.57057 7.58897 7.77335 8.33156 8.51626 9.21405 10.83308 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.011676 B = 0.002449 C = 0.002120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2397.531608 B =11429.611151 C =13206.736362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.077 4.077 3 C 0.183 3.817 4 N -0.541 5.541 5 C 0.335 3.665 6 N -0.558 5.558 7 C 0.426 3.574 8 N -0.699 5.699 9 C 0.141 3.859 10 H 0.101 0.899 11 C -0.160 4.160 12 C 0.111 3.889 13 N -0.740 5.740 14 C 0.533 3.467 15 O -0.515 6.515 16 C -0.154 4.154 17 S -0.059 6.059 18 C -0.535 4.535 19 H 0.073 0.927 20 C 0.073 3.927 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.280 1.280 26 C -0.074 4.074 27 F -0.124 7.124 28 H 0.061 0.939 29 H 0.057 0.943 30 H 0.068 0.932 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.202 0.798 34 H 0.417 0.583 35 H 0.065 0.935 36 H 0.059 0.941 37 H 0.073 0.927 38 H 0.086 0.914 39 H 0.073 0.927 40 H 0.398 0.602 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.589 -14.726 20.626 28.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.115 4.115 3 C 0.040 3.960 4 N -0.260 5.260 5 C 0.046 3.954 6 N -0.283 5.283 7 C 0.180 3.820 8 N -0.333 5.333 9 C 0.036 3.964 10 H 0.119 0.881 11 C -0.218 4.218 12 C -0.013 4.013 13 N -0.396 5.396 14 C 0.319 3.681 15 O -0.389 6.389 16 C -0.304 4.304 17 S 0.167 5.833 18 C -0.683 4.683 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.196 1.196 24 H -0.205 1.205 25 H -0.205 1.205 26 C -0.104 4.104 27 F -0.104 7.104 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.104 0.896 32 H 0.111 0.889 33 H 0.219 0.781 34 H 0.255 0.745 35 H 0.084 0.916 36 H 0.079 0.921 37 H 0.092 0.908 38 H 0.104 0.896 39 H 0.091 0.909 40 H 0.232 0.768 41 H 0.107 0.893 42 H 0.108 0.892 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 14.938 -12.987 19.918 28.081 hybrid contribution -2.397 -1.655 -0.114 2.915 sum 12.541 -14.642 19.804 27.638 Atomic orbital electron populations 1.21687 0.93135 1.02757 1.02656 1.20538 0.97269 0.89326 1.04409 1.21619 0.90815 0.97120 0.86445 1.68320 1.18323 1.11169 1.28151 1.24755 0.88090 0.86642 0.95951 1.68073 1.24883 1.38457 0.96841 1.18675 0.88474 0.86578 0.88322 1.44780 1.69422 1.14218 1.04839 1.21337 0.95501 0.80569 0.99006 0.88063 1.22116 0.93975 1.03069 1.02689 1.21643 0.82065 1.01333 0.96300 1.46002 1.07865 1.58114 1.27595 1.20327 0.90005 0.77701 0.80088 1.90712 1.64172 1.40441 1.43579 1.23532 0.93656 1.05906 1.07352 1.85387 1.07388 1.68310 1.22183 1.22901 0.92211 1.40275 1.12953 0.90892 1.24996 0.99539 0.94500 0.94564 1.70020 1.36052 1.33133 1.11067 0.86109 0.82984 0.78169 0.78200 1.19614 1.20540 1.20535 1.18576 1.15128 0.93136 0.83535 1.91495 1.93286 1.82304 1.43265 0.91954 0.92339 0.91306 0.89554 0.88939 0.78122 0.74482 0.91564 0.92149 0.90850 0.89628 0.90904 0.76788 0.89276 0.89239 0.92208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.97 9.89 37.16 0.37 -0.60 16 2 C -0.08 -0.54 6.11 -27.88 -0.17 -0.71 16 3 C 0.18 1.68 6.07 -82.26 -0.50 1.18 16 4 N -0.54 -4.99 10.37 -10.84 -0.11 -5.10 16 5 C 0.33 2.71 12.28 -92.21 -1.13 1.58 16 6 N -0.56 -5.10 9.35 -13.74 -0.13 -5.23 16 7 C 0.43 4.04 7.50 -154.64 -1.16 2.88 16 8 N -0.70 -5.87 4.66 -53.70 -0.25 -6.12 16 9 C 0.14 1.12 2.76 -67.93 -0.19 0.93 16 10 H 0.10 0.86 7.57 -51.93 -0.39 0.47 16 11 C -0.16 -1.10 9.50 37.16 0.35 -0.75 16 12 C 0.11 1.14 5.23 -4.04 -0.02 1.12 16 13 N -0.74 -9.35 5.39 -60.29 -0.32 -9.68 16 14 C 0.53 9.64 7.85 -10.99 -0.09 9.56 16 15 O -0.52 -11.35 15.86 5.55 0.09 -11.26 16 16 C -0.15 -3.08 6.16 36.01 0.22 -2.86 16 17 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 18 C -0.54 -15.23 9.50 30.94 0.29 -14.94 16 19 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 20 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 21 N -0.87 -26.11 13.22 55.49 0.73 -25.37 16 22 Si 0.92 21.40 29.55 -169.99 -5.02 16.38 16 23 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 24 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 25 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 26 C -0.07 -0.72 7.32 -38.98 -0.29 -1.01 16 27 F -0.12 -1.25 16.07 2.25 0.04 -1.22 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.09 0.55 7.71 -51.93 -0.40 0.15 16 32 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.20 0.94 8.06 -52.49 -0.42 0.52 16 34 H 0.42 3.47 8.17 -40.82 -0.33 3.14 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.40 4.33 8.14 -40.82 -0.33 4.00 16 41 H 0.09 1.66 8.14 -51.92 -0.42 1.23 16 42 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 43 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 387.36 15.07 5.84 5.84 Total: -1.00 -34.58 387.36 -9.83 -44.42 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -6.08 Total: 2.79 kcal Atomic # 6 Polarization: 0.77 SS G_CDS: -2.40 Total: -1.63 kcal Atomic # 7 Polarization: -51.43 SS G_CDS: -0.08 Total: -51.51 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: 0.09 Total: -11.26 kcal Atomic # 9 Polarization: -1.25 SS G_CDS: 0.04 Total: -1.22 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.58 -9.83 -44.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097674280.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.293 kcal (2) G-P(sol) polarization free energy of solvation -34.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds